data_3LKE # _model_server_result.job_id xOTtkPtFEQnmgJtd1gLeqg _model_server_result.datetime_utc '2024-11-05 00:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":264}' # _entry.id 3LKE # _exptl.entry_id 3LKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.94 _cell.angle_gamma 90 _cell.entry_id 3LKE _cell.length_a 73.917 _cell.length_b 52.519 _cell.length_c 104.891 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LKE _atom_sites.fract_transf_matrix[1][1] 0.013529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000932 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 264 2 GOL GOL . E 2 GOL B 1 264 1 GOL GOL . F 2 GOL C 1 264 3 GOL GOL . G 3 HOH A 1 265 5 HOH HOH . G 3 HOH A 2 266 8 HOH HOH . G 3 HOH A 3 267 11 HOH HOH . G 3 HOH A 4 268 14 HOH HOH . G 3 HOH A 5 269 20 HOH HOH . G 3 HOH A 6 270 22 HOH HOH . G 3 HOH A 7 271 24 HOH HOH . G 3 HOH A 8 272 26 HOH HOH . G 3 HOH A 9 273 30 HOH HOH . G 3 HOH A 10 274 35 HOH HOH . G 3 HOH A 11 275 36 HOH HOH . G 3 HOH A 12 276 37 HOH HOH . G 3 HOH A 13 277 43 HOH HOH . G 3 HOH A 14 278 45 HOH HOH . G 3 HOH A 15 279 47 HOH HOH . G 3 HOH A 16 280 53 HOH HOH . G 3 HOH A 17 281 54 HOH HOH . G 3 HOH A 18 282 58 HOH HOH . G 3 HOH A 19 283 63 HOH HOH . G 3 HOH A 20 284 66 HOH HOH . G 3 HOH A 21 285 67 HOH HOH . G 3 HOH A 22 286 68 HOH HOH . G 3 HOH A 23 287 72 HOH HOH . G 3 HOH A 24 288 76 HOH HOH . G 3 HOH A 25 289 77 HOH HOH . G 3 HOH A 26 290 78 HOH HOH . G 3 HOH A 27 291 79 HOH HOH . G 3 HOH A 28 292 82 HOH HOH . G 3 HOH A 29 293 83 HOH HOH . G 3 HOH A 30 294 95 HOH HOH . G 3 HOH A 31 295 97 HOH HOH . G 3 HOH A 32 296 108 HOH HOH . G 3 HOH A 33 297 113 HOH HOH . G 3 HOH A 34 298 114 HOH HOH . G 3 HOH A 35 299 115 HOH HOH . G 3 HOH A 36 300 116 HOH HOH . G 3 HOH A 37 301 120 HOH HOH . G 3 HOH A 38 302 139 HOH HOH . G 3 HOH A 39 303 140 HOH HOH . G 3 HOH A 40 304 141 HOH HOH . G 3 HOH A 41 305 142 HOH HOH . G 3 HOH A 42 306 143 HOH HOH . G 3 HOH A 43 307 145 HOH HOH . G 3 HOH A 44 308 147 HOH HOH . G 3 HOH A 45 309 151 HOH HOH . G 3 HOH A 46 310 152 HOH HOH . G 3 HOH A 47 311 153 HOH HOH . G 3 HOH A 48 312 154 HOH HOH . G 3 HOH A 49 313 158 HOH HOH . G 3 HOH A 50 314 161 HOH HOH . G 3 HOH A 51 315 162 HOH HOH . G 3 HOH A 52 316 164 HOH HOH . G 3 HOH A 53 317 165 HOH HOH . G 3 HOH A 54 318 166 HOH HOH . G 3 HOH A 55 319 168 HOH HOH . G 3 HOH A 56 320 169 HOH HOH . G 3 HOH A 57 321 171 HOH HOH . G 3 HOH A 58 322 173 HOH HOH . G 3 HOH A 59 323 174 HOH HOH . G 3 HOH A 60 324 178 HOH HOH . G 3 HOH A 61 325 185 HOH HOH . G 3 HOH A 62 326 186 HOH HOH . G 3 HOH A 63 327 188 HOH HOH . G 3 HOH A 64 328 189 HOH HOH . G 3 HOH A 65 329 193 HOH HOH . G 3 HOH A 66 330 197 HOH HOH . G 3 HOH A 67 331 199 HOH HOH . G 3 HOH A 68 332 200 HOH HOH . G 3 HOH A 69 333 201 HOH HOH . G 3 HOH A 70 334 202 HOH HOH . G 3 HOH A 71 335 203 HOH HOH . G 3 HOH A 72 336 206 HOH HOH . G 3 HOH A 73 337 207 HOH HOH . G 3 HOH A 74 338 208 HOH HOH . G 3 HOH A 75 339 209 HOH HOH . G 3 HOH A 76 340 210 HOH HOH . G 3 HOH A 77 341 212 HOH HOH . H 3 HOH B 1 265 4 HOH HOH . H 3 HOH B 2 266 7 HOH HOH . H 3 HOH B 3 267 10 HOH HOH . H 3 HOH B 4 268 12 HOH HOH . H 3 HOH B 5 269 13 HOH HOH . H 3 HOH B 6 270 15 HOH HOH . H 3 HOH B 7 271 16 HOH HOH . H 3 HOH B 8 272 17 HOH HOH . H 3 HOH B 9 273 19 HOH HOH . H 3 HOH B 10 274 21 HOH HOH . H 3 HOH B 11 275 23 HOH HOH . H 3 HOH B 12 276 28 HOH HOH . H 3 HOH B 13 277 33 HOH HOH . H 3 HOH B 14 278 38 HOH HOH . H 3 HOH B 15 279 39 HOH HOH . H 3 HOH B 16 280 40 HOH HOH . H 3 HOH B 17 281 49 HOH HOH . H 3 HOH B 18 282 51 HOH HOH . H 3 HOH B 19 283 52 HOH HOH . H 3 HOH B 20 284 56 HOH HOH . H 3 HOH B 21 285 57 HOH HOH . H 3 HOH B 22 286 62 HOH HOH . H 3 HOH B 23 287 71 HOH HOH . H 3 HOH B 24 288 73 HOH HOH . H 3 HOH B 25 289 74 HOH HOH . H 3 HOH B 26 290 75 HOH HOH . H 3 HOH B 27 291 85 HOH HOH . H 3 HOH B 28 292 87 HOH HOH . H 3 HOH B 29 293 88 HOH HOH . H 3 HOH B 30 294 89 HOH HOH . H 3 HOH B 31 295 90 HOH HOH . H 3 HOH B 32 296 93 HOH HOH . H 3 HOH B 33 297 98 HOH HOH . H 3 HOH B 34 298 102 HOH HOH . H 3 HOH B 35 299 103 HOH HOH . H 3 HOH B 36 300 104 HOH HOH . H 3 HOH B 37 301 105 HOH HOH . H 3 HOH B 38 302 107 HOH HOH . H 3 HOH B 39 303 109 HOH HOH . H 3 HOH B 40 304 110 HOH HOH . H 3 HOH B 41 305 117 HOH HOH . H 3 HOH B 42 306 118 HOH HOH . H 3 HOH B 43 307 119 HOH HOH . H 3 HOH B 44 308 121 HOH HOH . H 3 HOH B 45 309 122 HOH HOH . H 3 HOH B 46 310 123 HOH HOH . H 3 HOH B 47 311 126 HOH HOH . H 3 HOH B 48 312 127 HOH HOH . H 3 HOH B 49 313 130 HOH HOH . H 3 HOH B 50 314 132 HOH HOH . H 3 HOH B 51 315 133 HOH HOH . H 3 HOH B 52 316 136 HOH HOH . H 3 HOH B 53 317 144 HOH HOH . H 3 HOH B 54 318 149 HOH HOH . H 3 HOH B 55 319 150 HOH HOH . H 3 HOH B 56 320 156 HOH HOH . H 3 HOH B 57 321 157 HOH HOH . H 3 HOH B 58 322 159 HOH HOH . H 3 HOH B 59 323 163 HOH HOH . H 3 HOH B 60 324 167 HOH HOH . H 3 HOH B 61 325 180 HOH HOH . H 3 HOH B 62 326 190 HOH HOH . H 3 HOH B 63 327 196 HOH HOH . H 3 HOH B 64 328 198 HOH HOH . H 3 HOH B 65 329 204 HOH HOH . H 3 HOH B 66 330 205 HOH HOH . H 3 HOH B 67 331 213 HOH HOH . H 3 HOH B 68 332 214 HOH HOH . H 3 HOH B 69 333 216 HOH HOH . H 3 HOH B 70 334 217 HOH HOH . H 3 HOH B 71 335 218 HOH HOH . I 3 HOH C 1 265 1 HOH HOH . I 3 HOH C 2 266 2 HOH HOH . I 3 HOH C 3 267 3 HOH HOH . I 3 HOH C 4 268 6 HOH HOH . I 3 HOH C 5 269 9 HOH HOH . I 3 HOH C 6 270 18 HOH HOH . I 3 HOH C 7 271 25 HOH HOH . I 3 HOH C 8 272 27 HOH HOH . I 3 HOH C 9 273 29 HOH HOH . I 3 HOH C 10 274 31 HOH HOH . I 3 HOH C 11 275 32 HOH HOH . I 3 HOH C 12 276 34 HOH HOH . I 3 HOH C 13 277 41 HOH HOH . I 3 HOH C 14 278 42 HOH HOH . I 3 HOH C 15 279 44 HOH HOH . I 3 HOH C 16 280 46 HOH HOH . I 3 HOH C 17 281 48 HOH HOH . I 3 HOH C 18 282 50 HOH HOH . I 3 HOH C 19 283 55 HOH HOH . I 3 HOH C 20 284 59 HOH HOH . I 3 HOH C 21 285 60 HOH HOH . I 3 HOH C 22 286 61 HOH HOH . I 3 HOH C 23 287 64 HOH HOH . I 3 HOH C 24 288 65 HOH HOH . I 3 HOH C 25 289 69 HOH HOH . I 3 HOH C 26 290 70 HOH HOH . I 3 HOH C 27 291 80 HOH HOH . I 3 HOH C 28 292 81 HOH HOH . I 3 HOH C 29 293 84 HOH HOH . I 3 HOH C 30 294 86 HOH HOH . I 3 HOH C 31 295 91 HOH HOH . I 3 HOH C 32 296 92 HOH HOH . I 3 HOH C 33 297 94 HOH HOH . I 3 HOH C 34 298 96 HOH HOH . I 3 HOH C 35 299 99 HOH HOH . I 3 HOH C 36 300 100 HOH HOH . I 3 HOH C 37 301 101 HOH HOH . I 3 HOH C 38 302 106 HOH HOH . I 3 HOH C 39 303 111 HOH HOH . I 3 HOH C 40 304 112 HOH HOH . I 3 HOH C 41 305 124 HOH HOH . I 3 HOH C 42 306 125 HOH HOH . I 3 HOH C 43 307 128 HOH HOH . I 3 HOH C 44 308 129 HOH HOH . I 3 HOH C 45 309 131 HOH HOH . I 3 HOH C 46 310 134 HOH HOH . I 3 HOH C 47 311 135 HOH HOH . I 3 HOH C 48 312 137 HOH HOH . I 3 HOH C 49 313 138 HOH HOH . I 3 HOH C 50 314 146 HOH HOH . I 3 HOH C 51 315 148 HOH HOH . I 3 HOH C 52 316 155 HOH HOH . I 3 HOH C 53 317 160 HOH HOH . I 3 HOH C 54 318 170 HOH HOH . I 3 HOH C 55 319 172 HOH HOH . I 3 HOH C 56 320 175 HOH HOH . I 3 HOH C 57 321 176 HOH HOH . I 3 HOH C 58 322 177 HOH HOH . I 3 HOH C 59 323 179 HOH HOH . I 3 HOH C 60 324 181 HOH HOH . I 3 HOH C 61 325 182 HOH HOH . I 3 HOH C 62 326 183 HOH HOH . I 3 HOH C 63 327 184 HOH HOH . I 3 HOH C 64 328 187 HOH HOH . I 3 HOH C 65 329 191 HOH HOH . I 3 HOH C 66 330 192 HOH HOH . I 3 HOH C 67 331 194 HOH HOH . I 3 HOH C 68 332 195 HOH HOH . I 3 HOH C 69 333 211 HOH HOH . I 3 HOH C 70 334 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 23.861 41.564 22.604 1 29.19 ? C1 GOL 264 C 1 HETATM 2 O O1 GOL . . . F 2 22.697 40.78 22.584 1 36.38 ? O1 GOL 264 C 1 HETATM 3 C C2 GOL . . . F 2 23.639 42.773 21.713 1 36.63 ? C2 GOL 264 C 1 HETATM 4 O O2 GOL . . . F 2 22.414 43.41 22.05 1 38.44 ? O2 GOL 264 C 1 HETATM 5 C C3 GOL . . . F 2 23.558 42.205 20.302 1 30.44 ? C3 GOL 264 C 1 HETATM 6 O O3 GOL . . . F 2 24.771 42.444 19.643 1 30.09 ? O3 GOL 264 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #