data_3LKJ
#
_model_server_result.job_id            EdsvawG35yiJl6emZ_brOQ 
_model_server_result.datetime_utc      '2024-10-18 08:34:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lkj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2}' 
#
_entry.id    3LKJ 
#
_exptl.entry_id    3LKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LKJ 
_cell.length_a            63.303 
_cell.length_b            67.607 
_cell.length_c            108.534 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 178 1_555 A SG CYS 98 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 B SG CYS 58 B CYS 178 1_555 B SG CYS 98 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
covale ? covale1 D C1 NAG . A NAG 2 1_555 A ND2 ASN 120 A ASN 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 F C1 NAG . B NAG 2 1_555 B ND2 ASN 120 B ASN 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 I C1 NAG . C NAG 2 1_555 C ND2 ASN 120 C ASN 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 372 n n 
C1 O1 NAG sing 373 n n 
C1 O5 NAG sing 374 n n 
C1 H1 NAG sing 375 n n 
C2 C3 NAG sing 376 n n 
C2 N2 NAG sing 377 n n 
C2 H2 NAG sing 378 n n 
C3 C4 NAG sing 379 n n 
C3 O3 NAG sing 380 n n 
C3 H3 NAG sing 381 n n 
C4 C5 NAG sing 382 n n 
C4 O4 NAG sing 383 n n 
C4 H4 NAG sing 384 n n 
C5 C6 NAG sing 385 n n 
C5 O5 NAG sing 386 n n 
C5 H5 NAG sing 387 n n 
C6 O6 NAG sing 388 n n 
C6 H61 NAG sing 389 n n 
C6 H62 NAG sing 390 n n 
C7 C8 NAG sing 391 n n 
C7 N2 NAG sing 392 n n 
C7 O7 NAG doub 393 n n 
C8 H81 NAG sing 394 n n 
C8 H82 NAG sing 395 n n 
C8 H83 NAG sing 396 n n 
N2 HN2 NAG sing 397 n n 
O1 HO1 NAG sing 398 n n 
O3 HO3 NAG sing 399 n n 
O4 HO4 NAG sing 400 n n 
O6 HO6 NAG sing 401 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3LKJ 
_atom_sites.fract_transf_matrix[1][1]    0.015797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 2 2 NAG NAG . 
E 2 NAG A 1 3 3 NAG NAG . 
F 2 NAG B 1 2 2 NAG NAG . 
G 2 NAG B 1 3 3 NAG NAG . 
H 3 LKJ C 1 1 1 LKJ LKJ . 
I 2 NAG C 1 2 2 NAG NAG . 
J 2 NAG C 1 3 3 NAG NAG . 
K 4 HOH A 1 4 4 HOH HOH . 
K 4 HOH A 2 12 12 HOH HOH . 
K 4 HOH A 3 16 16 HOH HOH . 
K 4 HOH A 4 19 19 HOH HOH . 
K 4 HOH A 5 23 23 HOH HOH . 
K 4 HOH A 6 24 24 HOH HOH . 
K 4 HOH A 7 25 25 HOH HOH . 
K 4 HOH A 8 28 28 HOH HOH . 
K 4 HOH A 9 30 30 HOH HOH . 
K 4 HOH A 10 31 31 HOH HOH . 
K 4 HOH A 11 32 32 HOH HOH . 
K 4 HOH A 12 38 38 HOH HOH . 
K 4 HOH A 13 40 40 HOH HOH . 
K 4 HOH A 14 42 42 HOH HOH . 
K 4 HOH A 15 45 45 HOH HOH . 
K 4 HOH A 16 48 48 HOH HOH . 
K 4 HOH A 17 57 57 HOH HOH . 
K 4 HOH A 18 61 61 HOH HOH . 
K 4 HOH A 19 62 62 HOH HOH . 
K 4 HOH A 20 63 63 HOH HOH . 
K 4 HOH A 21 67 67 HOH HOH . 
K 4 HOH A 22 73 73 HOH HOH . 
K 4 HOH A 23 74 74 HOH HOH . 
K 4 HOH A 24 262 2 HOH HOH . 
L 4 HOH B 1 6 6 HOH HOH . 
L 4 HOH B 2 13 13 HOH HOH . 
L 4 HOH B 3 14 14 HOH HOH . 
L 4 HOH B 4 17 17 HOH HOH . 
L 4 HOH B 5 20 20 HOH HOH . 
L 4 HOH B 6 21 21 HOH HOH . 
L 4 HOH B 7 26 26 HOH HOH . 
L 4 HOH B 8 27 27 HOH HOH . 
L 4 HOH B 9 29 29 HOH HOH . 
L 4 HOH B 10 33 33 HOH HOH . 
L 4 HOH B 11 36 36 HOH HOH . 
L 4 HOH B 12 37 37 HOH HOH . 
L 4 HOH B 13 39 39 HOH HOH . 
L 4 HOH B 14 44 44 HOH HOH . 
L 4 HOH B 15 46 46 HOH HOH . 
L 4 HOH B 16 47 47 HOH HOH . 
L 4 HOH B 17 51 51 HOH HOH . 
L 4 HOH B 18 58 58 HOH HOH . 
L 4 HOH B 19 59 59 HOH HOH . 
L 4 HOH B 20 65 65 HOH HOH . 
L 4 HOH B 21 66 66 HOH HOH . 
L 4 HOH B 22 69 69 HOH HOH . 
L 4 HOH B 23 70 70 HOH HOH . 
L 4 HOH B 24 71 71 HOH HOH . 
L 4 HOH B 25 76 76 HOH HOH . 
L 4 HOH B 26 80 80 HOH HOH . 
L 4 HOH B 27 81 81 HOH HOH . 
M 4 HOH C 1 5 5 HOH HOH . 
M 4 HOH C 2 7 7 HOH HOH . 
M 4 HOH C 3 9 9 HOH HOH . 
M 4 HOH C 4 10 10 HOH HOH . 
M 4 HOH C 5 18 18 HOH HOH . 
M 4 HOH C 6 34 34 HOH HOH . 
M 4 HOH C 7 35 35 HOH HOH . 
M 4 HOH C 8 41 41 HOH HOH . 
M 4 HOH C 9 49 49 HOH HOH . 
M 4 HOH C 10 53 53 HOH HOH . 
M 4 HOH C 11 54 54 HOH HOH . 
M 4 HOH C 12 56 56 HOH HOH . 
M 4 HOH C 13 60 60 HOH HOH . 
M 4 HOH C 14 64 64 HOH HOH . 
M 4 HOH C 15 68 68 HOH HOH . 
M 4 HOH C 16 72 72 HOH HOH . 
M 4 HOH C 17 75 75 HOH HOH . 
M 4 HOH C 18 77 77 HOH HOH . 
M 4 HOH C 19 78 78 HOH HOH . 
M 4 HOH C 20 79 79 HOH HOH . 
M 4 HOH C 21 82 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 2 22.443 35.134 38.099 1 41.54 ? C1 NAG 2 C 1 
HETATM 2 C C2 NAG . . . I 2 20.969 35.239 38.467 1 44.92 ? C2 NAG 2 C 1 
HETATM 3 C C3 NAG . . . I 2 20.437 36.677 38.563 1 45.58 ? C3 NAG 2 C 1 
HETATM 4 C C4 NAG . . . I 2 21.566 37.696 38.748 1 44.6 ? C4 NAG 2 C 1 
HETATM 5 C C5 NAG . . . I 2 22.592 37.558 37.622 1 44.39 ? C5 NAG 2 C 1 
HETATM 6 C C6 NAG . . . I 2 23.749 38.564 37.705 1 44.37 ? C6 NAG 2 C 1 
HETATM 7 C C7 NAG . . . I 2 19.21 33.76 37.54 1 48.35 ? C7 NAG 2 C 1 
HETATM 8 C C8 NAG . . . I 2 18.853 32.989 36.311 1 45.75 ? C8 NAG 2 C 1 
HETATM 9 N N2 NAG . . . I 2 20.342 34.427 37.436 1 47.94 ? N2 NAG 2 C 1 
HETATM 10 O O3 NAG . . . I 2 19.502 36.734 39.625 1 46.63 ? O3 NAG 2 C 1 
HETATM 11 O O4 NAG . . . I 2 21.068 39.016 38.703 1 45.74 ? O4 NAG 2 C 1 
HETATM 12 O O5 NAG . . . I 2 23.127 36.245 37.522 1 41.94 ? O5 NAG 2 C 1 
HETATM 13 O O6 NAG . . . I 2 24.086 38.882 39.046 1 44.53 ? O6 NAG 2 C 1 
HETATM 14 O O7 NAG . . . I 2 18.51 33.781 38.555 1 52.3 ? O7 NAG 2 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#