data_3LKK
#
_model_server_result.job_id            5llbim6zAFlIrJLf-uk5mQ 
_model_server_result.datetime_utc      '2024-11-30 00:52:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":247}' 
#
_entry.id    3LKK 
#
_exptl.entry_id    3LKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              166.112 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Isopentenyl phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.45 
_cell.angle_gamma         90 
_cell.entry_id            3LKK 
_cell.length_a            124.307 
_cell.length_b            44.279 
_cell.length_c            91.764 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C5 H11 O4 P' 
_chem_comp.formula_weight    166.112 
_chem_comp.id                IP8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Isopentenyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '3-methylbut-3-en-1-yl dihydrogen phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O P1 IP8 doub 222 n n 
C1 C2 IP8 sing 223 n n 
C1 O1 IP8 sing 224 n n 
C1 H1 IP8 sing 225 n n 
C1 H1A IP8 sing 226 n n 
P1 O1 IP8 sing 227 n n 
O3 P1 IP8 sing 228 n n 
P1 O2 IP8 sing 229 n n 
C3 C2 IP8 sing 230 n n 
C2 H2 IP8 sing 231 n n 
C2 H2A IP8 sing 232 n n 
O2 HO2 IP8 sing 233 n n 
C5 C3 IP8 doub 234 n n 
C3 C4 IP8 sing 235 n n 
O3 HO3 IP8 sing 236 n n 
C4 H4 IP8 sing 237 n n 
C4 H4A IP8 sing 238 n n 
C4 H4B IP8 sing 239 n n 
C5 H5 IP8 sing 240 n n 
C5 H5A IP8 sing 241 n n 
#
_atom_sites.entry_id                     3LKK 
_atom_sites.fract_transf_matrix[1][1]    0.008045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002841 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022584 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011557 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 246 1 ATP ATP . 
D 3 IP8 A 1 247 1 IP8 IP8 . 
E 2 ATP B 1 246 2 ATP ATP . 
F 3 IP8 B 1 247 2 IP8 IP8 . 
G 4 HOH A 1 248 2 HOH HOH . 
G 4 HOH A 2 249 3 HOH HOH . 
G 4 HOH A 3 250 4 HOH HOH . 
G 4 HOH A 4 251 5 HOH HOH . 
G 4 HOH A 5 252 6 HOH HOH . 
G 4 HOH A 6 253 7 HOH HOH . 
G 4 HOH A 7 254 8 HOH HOH . 
G 4 HOH A 8 255 10 HOH HOH . 
G 4 HOH A 9 256 11 HOH HOH . 
G 4 HOH A 10 257 13 HOH HOH . 
G 4 HOH A 11 258 14 HOH HOH . 
G 4 HOH A 12 259 16 HOH HOH . 
G 4 HOH A 13 260 17 HOH HOH . 
G 4 HOH A 14 261 18 HOH HOH . 
G 4 HOH A 15 262 20 HOH HOH . 
G 4 HOH A 16 263 21 HOH HOH . 
G 4 HOH A 17 264 23 HOH HOH . 
G 4 HOH A 18 265 24 HOH HOH . 
G 4 HOH A 19 266 26 HOH HOH . 
G 4 HOH A 20 267 30 HOH HOH . 
G 4 HOH A 21 268 32 HOH HOH . 
G 4 HOH A 22 269 33 HOH HOH . 
G 4 HOH A 23 270 34 HOH HOH . 
G 4 HOH A 24 271 35 HOH HOH . 
G 4 HOH A 25 272 37 HOH HOH . 
G 4 HOH A 26 273 39 HOH HOH . 
G 4 HOH A 27 274 40 HOH HOH . 
G 4 HOH A 28 275 41 HOH HOH . 
G 4 HOH A 29 276 44 HOH HOH . 
G 4 HOH A 30 277 45 HOH HOH . 
G 4 HOH A 31 278 46 HOH HOH . 
G 4 HOH A 32 279 48 HOH HOH . 
G 4 HOH A 33 280 49 HOH HOH . 
G 4 HOH A 34 281 51 HOH HOH . 
G 4 HOH A 35 282 53 HOH HOH . 
G 4 HOH A 36 283 54 HOH HOH . 
G 4 HOH A 37 284 57 HOH HOH . 
G 4 HOH A 38 285 60 HOH HOH . 
G 4 HOH A 39 286 62 HOH HOH . 
G 4 HOH A 40 287 65 HOH HOH . 
G 4 HOH A 41 288 71 HOH HOH . 
G 4 HOH A 42 289 72 HOH HOH . 
G 4 HOH A 43 290 73 HOH HOH . 
G 4 HOH A 44 291 79 HOH HOH . 
G 4 HOH A 45 292 80 HOH HOH . 
G 4 HOH A 46 293 82 HOH HOH . 
G 4 HOH A 47 294 87 HOH HOH . 
G 4 HOH A 48 295 88 HOH HOH . 
G 4 HOH A 49 296 90 HOH HOH . 
G 4 HOH A 50 297 91 HOH HOH . 
G 4 HOH A 51 298 95 HOH HOH . 
G 4 HOH A 52 299 96 HOH HOH . 
G 4 HOH A 53 300 100 HOH HOH . 
G 4 HOH A 54 301 103 HOH HOH . 
G 4 HOH A 55 302 104 HOH HOH . 
G 4 HOH A 56 303 105 HOH HOH . 
G 4 HOH A 57 304 111 HOH HOH . 
G 4 HOH A 58 305 113 HOH HOH . 
G 4 HOH A 59 306 115 HOH HOH . 
G 4 HOH A 60 307 116 HOH HOH . 
G 4 HOH A 61 308 117 HOH HOH . 
G 4 HOH A 62 309 119 HOH HOH . 
G 4 HOH A 63 310 121 HOH HOH . 
G 4 HOH A 64 311 122 HOH HOH . 
G 4 HOH A 65 312 124 HOH HOH . 
G 4 HOH A 66 313 126 HOH HOH . 
G 4 HOH A 67 314 127 HOH HOH . 
G 4 HOH A 68 315 129 HOH HOH . 
G 4 HOH A 69 316 130 HOH HOH . 
G 4 HOH A 70 317 132 HOH HOH . 
G 4 HOH A 71 318 133 HOH HOH . 
G 4 HOH A 72 319 136 HOH HOH . 
G 4 HOH A 73 320 138 HOH HOH . 
G 4 HOH A 74 321 139 HOH HOH . 
G 4 HOH A 75 322 140 HOH HOH . 
G 4 HOH A 76 323 143 HOH HOH . 
G 4 HOH A 77 324 151 HOH HOH . 
G 4 HOH A 78 325 152 HOH HOH . 
G 4 HOH A 79 326 156 HOH HOH . 
G 4 HOH A 80 327 160 HOH HOH . 
G 4 HOH A 81 328 161 HOH HOH . 
G 4 HOH A 82 329 162 HOH HOH . 
G 4 HOH A 83 330 164 HOH HOH . 
G 4 HOH A 84 331 167 HOH HOH . 
G 4 HOH A 85 332 168 HOH HOH . 
G 4 HOH A 86 333 169 HOH HOH . 
G 4 HOH A 87 334 171 HOH HOH . 
G 4 HOH A 88 335 172 HOH HOH . 
G 4 HOH A 89 336 174 HOH HOH . 
G 4 HOH A 90 337 180 HOH HOH . 
G 4 HOH A 91 338 187 HOH HOH . 
G 4 HOH A 92 339 188 HOH HOH . 
G 4 HOH A 93 340 189 HOH HOH . 
G 4 HOH A 94 341 190 HOH HOH . 
G 4 HOH A 95 342 193 HOH HOH . 
G 4 HOH A 96 343 194 HOH HOH . 
G 4 HOH A 97 344 196 HOH HOH . 
G 4 HOH A 98 345 197 HOH HOH . 
G 4 HOH A 99 346 201 HOH HOH . 
G 4 HOH A 100 347 204 HOH HOH . 
G 4 HOH A 101 348 205 HOH HOH . 
G 4 HOH A 102 349 207 HOH HOH . 
G 4 HOH A 103 350 211 HOH HOH . 
G 4 HOH A 104 351 213 HOH HOH . 
G 4 HOH A 105 352 216 HOH HOH . 
G 4 HOH A 106 353 224 HOH HOH . 
G 4 HOH A 107 354 225 HOH HOH . 
G 4 HOH A 108 355 227 HOH HOH . 
G 4 HOH A 109 356 228 HOH HOH . 
G 4 HOH A 110 357 231 HOH HOH . 
G 4 HOH A 111 358 232 HOH HOH . 
G 4 HOH A 112 359 233 HOH HOH . 
G 4 HOH A 113 360 234 HOH HOH . 
G 4 HOH A 114 361 235 HOH HOH . 
G 4 HOH A 115 362 236 HOH HOH . 
G 4 HOH A 116 363 170 HOH HOH . 
H 4 HOH B 1 248 9 HOH HOH . 
H 4 HOH B 2 249 15 HOH HOH . 
H 4 HOH B 3 250 19 HOH HOH . 
H 4 HOH B 4 251 22 HOH HOH . 
H 4 HOH B 5 252 28 HOH HOH . 
H 4 HOH B 6 253 29 HOH HOH . 
H 4 HOH B 7 254 31 HOH HOH . 
H 4 HOH B 8 255 36 HOH HOH . 
H 4 HOH B 9 256 38 HOH HOH . 
H 4 HOH B 10 257 42 HOH HOH . 
H 4 HOH B 11 258 47 HOH HOH . 
H 4 HOH B 12 259 50 HOH HOH . 
H 4 HOH B 13 260 55 HOH HOH . 
H 4 HOH B 14 261 58 HOH HOH . 
H 4 HOH B 15 262 61 HOH HOH . 
H 4 HOH B 16 263 63 HOH HOH . 
H 4 HOH B 17 264 64 HOH HOH . 
H 4 HOH B 18 265 67 HOH HOH . 
H 4 HOH B 19 266 69 HOH HOH . 
H 4 HOH B 20 267 70 HOH HOH . 
H 4 HOH B 21 268 74 HOH HOH . 
H 4 HOH B 22 269 75 HOH HOH . 
H 4 HOH B 23 270 76 HOH HOH . 
H 4 HOH B 24 271 77 HOH HOH . 
H 4 HOH B 25 272 83 HOH HOH . 
H 4 HOH B 26 273 84 HOH HOH . 
H 4 HOH B 27 274 85 HOH HOH . 
H 4 HOH B 28 275 89 HOH HOH . 
H 4 HOH B 29 276 92 HOH HOH . 
H 4 HOH B 30 277 94 HOH HOH . 
H 4 HOH B 31 278 98 HOH HOH . 
H 4 HOH B 32 279 99 HOH HOH . 
H 4 HOH B 33 280 101 HOH HOH . 
H 4 HOH B 34 281 106 HOH HOH . 
H 4 HOH B 35 282 107 HOH HOH . 
H 4 HOH B 36 283 108 HOH HOH . 
H 4 HOH B 37 284 109 HOH HOH . 
H 4 HOH B 38 285 110 HOH HOH . 
H 4 HOH B 39 286 112 HOH HOH . 
H 4 HOH B 40 287 118 HOH HOH . 
H 4 HOH B 41 288 120 HOH HOH . 
H 4 HOH B 42 289 123 HOH HOH . 
H 4 HOH B 43 290 125 HOH HOH . 
H 4 HOH B 44 291 128 HOH HOH . 
H 4 HOH B 45 292 131 HOH HOH . 
H 4 HOH B 46 293 134 HOH HOH . 
H 4 HOH B 47 294 137 HOH HOH . 
H 4 HOH B 48 295 141 HOH HOH . 
H 4 HOH B 49 296 142 HOH HOH . 
H 4 HOH B 50 297 144 HOH HOH . 
H 4 HOH B 51 298 146 HOH HOH . 
H 4 HOH B 52 299 147 HOH HOH . 
H 4 HOH B 53 300 149 HOH HOH . 
H 4 HOH B 54 301 150 HOH HOH . 
H 4 HOH B 55 302 153 HOH HOH . 
H 4 HOH B 56 303 157 HOH HOH . 
H 4 HOH B 57 304 158 HOH HOH . 
H 4 HOH B 58 305 159 HOH HOH . 
H 4 HOH B 59 306 163 HOH HOH . 
H 4 HOH B 60 307 165 HOH HOH . 
H 4 HOH B 61 308 166 HOH HOH . 
H 4 HOH B 62 310 175 HOH HOH . 
H 4 HOH B 63 311 176 HOH HOH . 
H 4 HOH B 64 312 178 HOH HOH . 
H 4 HOH B 65 313 179 HOH HOH . 
H 4 HOH B 66 314 183 HOH HOH . 
H 4 HOH B 67 315 185 HOH HOH . 
H 4 HOH B 68 316 186 HOH HOH . 
H 4 HOH B 69 317 191 HOH HOH . 
H 4 HOH B 70 318 192 HOH HOH . 
H 4 HOH B 71 319 195 HOH HOH . 
H 4 HOH B 72 320 198 HOH HOH . 
H 4 HOH B 73 321 199 HOH HOH . 
H 4 HOH B 74 322 202 HOH HOH . 
H 4 HOH B 75 323 203 HOH HOH . 
H 4 HOH B 76 324 208 HOH HOH . 
H 4 HOH B 77 325 210 HOH HOH . 
H 4 HOH B 78 326 214 HOH HOH . 
H 4 HOH B 79 327 215 HOH HOH . 
H 4 HOH B 80 328 217 HOH HOH . 
H 4 HOH B 81 329 223 HOH HOH . 
H 4 HOH B 82 330 237 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O IP8 . . . F 3 22.871 -24.672 -20.791 1 40.39 ? O IP8 247 B 1 
HETATM 2 C C1 IP8 . . . F 3 20.683 -22.792 -22.367 1 40.68 ? C1 IP8 247 B 1 
HETATM 3 O O1 IP8 . . . F 3 20.554 -23.529 -21.114 1 45.69 ? O1 IP8 247 B 1 
HETATM 4 P P1 IP8 . . . F 3 21.385 -24.849 -20.56 1 42.81 ? P1 IP8 247 B 1 
HETATM 5 C C2 IP8 . . . F 3 19.609 -23.256 -23.357 1 37.36 ? C2 IP8 247 B 1 
HETATM 6 O O2 IP8 . . . F 3 21.064 -24.774 -19.067 1 31.72 ? O2 IP8 247 B 1 
HETATM 7 C C3 IP8 . . . F 3 19.658 -22.461 -24.659 1 44.89 ? C3 IP8 247 B 1 
HETATM 8 O O3 IP8 . . . F 3 20.646 -25.835 -21.41 1 34.35 ? O3 IP8 247 B 1 
HETATM 9 C C4 IP8 . . . F 3 20.401 -22.876 -25.669 1 39.15 ? C4 IP8 247 B 1 
HETATM 10 C C5 IP8 . . . F 3 18.848 -21.178 -24.813 1 30.39 ? C5 IP8 247 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#