data_3LKV # _model_server_result.job_id zJUwh6uSAt1HwqWy1iGVyA _model_server_result.datetime_utc '2024-11-20 13:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3LKV # _exptl.entry_id 3LKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LKV _cell.length_a 144.256 _cell.length_b 144.256 _cell.length_c 144.256 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 22_564 z+1/4,-y+5/4,x-1/4 0 0 1 0 -1 0 1 0 0 36.064 180.32 -36.064 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 157 A LEU 176 1_555 A N MSE 158 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 158 A MSE 177 1_555 A N GLU 159 A GLU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C GLY 211 A GLY 230 1_555 A N MSE 212 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 212 A MSE 231 1_555 A N ILE 213 A ILE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? metalc ? metalc1 A OE2 GLU 45 A GLU 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 A OD1 ASP 47 A ASP 66 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 A OD2 ASP 47 A ASP 66 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 A OE2 GLU 111 A GLU 130 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc5 A O ALA 191 A ALA 210 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 A O SER 194 A SER 213 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 A OG1 THR 221 A THR 240 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 A OD2 ASP 267 A ASP 286 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc9 E ZN ZN . A ZN 403 1_555 H O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 E ZN ZN . A ZN 403 1_555 H O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LKV _atom_sites.fract_transf_matrix[1][1] 0.006932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHE A 1 601 601 PHE PHE . C 3 ZN A 1 401 401 ZN ZN . D 3 ZN A 1 402 402 ZN ZN . E 3 ZN A 1 403 403 ZN ZN . F 4 SO4 A 1 501 501 SO4 SO4 . G 5 GOL A 1 1001 1001 GOL GOL . H 6 HOH A 1 602 602 HOH HOH . H 6 HOH A 2 603 603 HOH HOH . H 6 HOH A 3 604 604 HOH HOH . H 6 HOH A 4 605 605 HOH HOH . H 6 HOH A 5 606 606 HOH HOH . H 6 HOH A 6 607 607 HOH HOH . H 6 HOH A 7 608 608 HOH HOH . H 6 HOH A 8 609 609 HOH HOH . H 6 HOH A 9 610 610 HOH HOH . H 6 HOH A 10 611 611 HOH HOH . H 6 HOH A 11 612 612 HOH HOH . H 6 HOH A 12 613 613 HOH HOH . H 6 HOH A 13 614 614 HOH HOH . H 6 HOH A 14 615 615 HOH HOH . H 6 HOH A 15 616 616 HOH HOH . H 6 HOH A 16 617 617 HOH HOH . H 6 HOH A 17 618 618 HOH HOH . H 6 HOH A 18 619 619 HOH HOH . H 6 HOH A 19 620 620 HOH HOH . H 6 HOH A 20 621 621 HOH HOH . H 6 HOH A 21 622 622 HOH HOH . H 6 HOH A 22 623 623 HOH HOH . H 6 HOH A 23 624 624 HOH HOH . H 6 HOH A 24 625 625 HOH HOH . H 6 HOH A 25 626 626 HOH HOH . H 6 HOH A 26 627 627 HOH HOH . H 6 HOH A 27 628 628 HOH HOH . H 6 HOH A 28 629 629 HOH HOH . H 6 HOH A 29 630 630 HOH HOH . H 6 HOH A 30 631 631 HOH HOH . H 6 HOH A 31 632 632 HOH HOH . H 6 HOH A 32 633 633 HOH HOH . H 6 HOH A 33 635 635 HOH HOH . H 6 HOH A 34 636 636 HOH HOH . H 6 HOH A 35 637 637 HOH HOH . H 6 HOH A 36 638 638 HOH HOH . H 6 HOH A 37 639 639 HOH HOH . H 6 HOH A 38 640 640 HOH HOH . H 6 HOH A 39 641 641 HOH HOH . H 6 HOH A 40 642 642 HOH HOH . H 6 HOH A 41 643 643 HOH HOH . H 6 HOH A 42 644 644 HOH HOH . H 6 HOH A 43 645 645 HOH HOH . H 6 HOH A 44 646 646 HOH HOH . H 6 HOH A 45 647 647 HOH HOH . H 6 HOH A 46 648 648 HOH HOH . H 6 HOH A 47 649 649 HOH HOH . H 6 HOH A 48 650 650 HOH HOH . H 6 HOH A 49 651 651 HOH HOH . H 6 HOH A 50 652 652 HOH HOH . H 6 HOH A 51 653 653 HOH HOH . H 6 HOH A 52 654 654 HOH HOH . H 6 HOH A 53 655 655 HOH HOH . H 6 HOH A 54 657 657 HOH HOH . H 6 HOH A 55 658 658 HOH HOH . H 6 HOH A 56 659 659 HOH HOH . H 6 HOH A 57 660 660 HOH HOH . H 6 HOH A 58 661 661 HOH HOH . H 6 HOH A 59 662 662 HOH HOH . H 6 HOH A 60 663 663 HOH HOH . H 6 HOH A 61 664 664 HOH HOH . H 6 HOH A 62 665 665 HOH HOH . H 6 HOH A 63 666 666 HOH HOH . H 6 HOH A 64 667 667 HOH HOH . H 6 HOH A 65 669 669 HOH HOH . H 6 HOH A 66 670 670 HOH HOH . H 6 HOH A 67 671 671 HOH HOH . H 6 HOH A 68 672 672 HOH HOH . H 6 HOH A 69 673 673 HOH HOH . H 6 HOH A 70 674 674 HOH HOH . H 6 HOH A 71 675 675 HOH HOH . H 6 HOH A 72 676 676 HOH HOH . H 6 HOH A 73 677 677 HOH HOH . H 6 HOH A 74 678 678 HOH HOH . H 6 HOH A 75 679 679 HOH HOH . H 6 HOH A 76 682 682 HOH HOH . H 6 HOH A 77 683 683 HOH HOH . H 6 HOH A 78 684 684 HOH HOH . H 6 HOH A 79 685 685 HOH HOH . H 6 HOH A 80 686 686 HOH HOH . H 6 HOH A 81 687 687 HOH HOH . H 6 HOH A 82 688 688 HOH HOH . H 6 HOH A 83 689 689 HOH HOH . H 6 HOH A 84 690 690 HOH HOH . H 6 HOH A 85 691 691 HOH HOH . H 6 HOH A 86 692 692 HOH HOH . H 6 HOH A 87 693 693 HOH HOH . H 6 HOH A 88 694 694 HOH HOH . H 6 HOH A 89 695 695 HOH HOH . H 6 HOH A 90 696 696 HOH HOH . H 6 HOH A 91 697 697 HOH HOH . H 6 HOH A 92 698 698 HOH HOH . H 6 HOH A 93 699 699 HOH HOH . H 6 HOH A 94 700 700 HOH HOH . H 6 HOH A 95 701 701 HOH HOH . H 6 HOH A 96 702 702 HOH HOH . H 6 HOH A 97 703 703 HOH HOH . H 6 HOH A 98 704 704 HOH HOH . H 6 HOH A 99 705 705 HOH HOH . H 6 HOH A 100 706 706 HOH HOH . H 6 HOH A 101 707 707 HOH HOH . H 6 HOH A 102 709 709 HOH HOH . H 6 HOH A 103 710 710 HOH HOH . H 6 HOH A 104 711 711 HOH HOH . H 6 HOH A 105 712 712 HOH HOH . H 6 HOH A 106 713 713 HOH HOH . H 6 HOH A 107 714 714 HOH HOH . H 6 HOH A 108 715 715 HOH HOH . H 6 HOH A 109 716 716 HOH HOH . H 6 HOH A 110 717 717 HOH HOH . H 6 HOH A 111 718 718 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 64.835 _atom_site.Cartn_y 89.977 _atom_site.Cartn_z 28.44 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 31.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #