data_3LKV
#
_model_server_result.job_id            68ukZPLLcOd1_nb7WDimcQ 
_model_server_result.datetime_utc      '2024-11-20 13:30:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    3LKV 
#
_exptl.entry_id    3LKV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.189 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENYLALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LKV 
_cell.length_a            144.256 
_cell.length_b            144.256 
_cell.length_c            144.256 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 22_564 z+1/4,-y+5/4,x-1/4 0 0 1 0 -1 0 1 0 0 36.064 180.32 -36.064 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 157 A LEU 176 1_555 A N MSE 158 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 158 A MSE 177 1_555 A N GLU 159 A GLU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A C GLY 211 A GLY 230 1_555 A N MSE 212 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 212 A MSE 231 1_555 A N ILE 213 A ILE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
metalc ? metalc1 A OE2 GLU 45 A GLU 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc2 A OD1 ASP 47 A ASP 66 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc3 A OD2 ASP 47 A ASP 66 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 A OE2 GLU 111 A GLU 130 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? 
metalc ? metalc5 A O ALA 191 A ALA 210 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 A O SER 194 A SER 213 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 A OG1 THR 221 A THR 240 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc8 A OD2 ASP 267 A ASP 286 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc9 E ZN ZN . A ZN 403 1_555 H O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc10 E ZN ZN . A ZN 403 1_555 H O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
#
_chem_comp.formula           'C9 H11 N O2' 
_chem_comp.formula_weight    165.189 
_chem_comp.id                PHE 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PHENYLALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PHE sing 237 n n 
N H PHE sing 238 n n 
N H2 PHE sing 239 n n 
CA C PHE sing 240 n n 
CA CB PHE sing 241 n n 
CA HA PHE sing 242 n n 
C O PHE doub 243 n n 
C OXT PHE sing 244 n n 
CB CG PHE sing 245 n n 
CB HB2 PHE sing 246 n n 
CB HB3 PHE sing 247 n n 
CG CD1 PHE doub 248 n y 
CG CD2 PHE sing 249 n y 
CD1 CE1 PHE sing 250 n y 
CD1 HD1 PHE sing 251 n n 
CD2 CE2 PHE doub 252 n y 
CD2 HD2 PHE sing 253 n n 
CE1 CZ PHE doub 254 n y 
CE1 HE1 PHE sing 255 n n 
CE2 CZ PHE sing 256 n y 
CE2 HE2 PHE sing 257 n n 
CZ HZ PHE sing 258 n n 
OXT HXT PHE sing 259 n n 
#
_atom_sites.entry_id                     3LKV 
_atom_sites.fract_transf_matrix[1][1]    0.006932 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PHE A 1 601 601 PHE PHE . 
C 3 ZN A 1 401 401 ZN ZN . 
D 3 ZN A 1 402 402 ZN ZN . 
E 3 ZN A 1 403 403 ZN ZN . 
F 4 SO4 A 1 501 501 SO4 SO4 . 
G 5 GOL A 1 1001 1001 GOL GOL . 
H 6 HOH A 1 602 602 HOH HOH . 
H 6 HOH A 2 603 603 HOH HOH . 
H 6 HOH A 3 604 604 HOH HOH . 
H 6 HOH A 4 605 605 HOH HOH . 
H 6 HOH A 5 606 606 HOH HOH . 
H 6 HOH A 6 607 607 HOH HOH . 
H 6 HOH A 7 608 608 HOH HOH . 
H 6 HOH A 8 609 609 HOH HOH . 
H 6 HOH A 9 610 610 HOH HOH . 
H 6 HOH A 10 611 611 HOH HOH . 
H 6 HOH A 11 612 612 HOH HOH . 
H 6 HOH A 12 613 613 HOH HOH . 
H 6 HOH A 13 614 614 HOH HOH . 
H 6 HOH A 14 615 615 HOH HOH . 
H 6 HOH A 15 616 616 HOH HOH . 
H 6 HOH A 16 617 617 HOH HOH . 
H 6 HOH A 17 618 618 HOH HOH . 
H 6 HOH A 18 619 619 HOH HOH . 
H 6 HOH A 19 620 620 HOH HOH . 
H 6 HOH A 20 621 621 HOH HOH . 
H 6 HOH A 21 622 622 HOH HOH . 
H 6 HOH A 22 623 623 HOH HOH . 
H 6 HOH A 23 624 624 HOH HOH . 
H 6 HOH A 24 625 625 HOH HOH . 
H 6 HOH A 25 626 626 HOH HOH . 
H 6 HOH A 26 627 627 HOH HOH . 
H 6 HOH A 27 628 628 HOH HOH . 
H 6 HOH A 28 629 629 HOH HOH . 
H 6 HOH A 29 630 630 HOH HOH . 
H 6 HOH A 30 631 631 HOH HOH . 
H 6 HOH A 31 632 632 HOH HOH . 
H 6 HOH A 32 633 633 HOH HOH . 
H 6 HOH A 33 635 635 HOH HOH . 
H 6 HOH A 34 636 636 HOH HOH . 
H 6 HOH A 35 637 637 HOH HOH . 
H 6 HOH A 36 638 638 HOH HOH . 
H 6 HOH A 37 639 639 HOH HOH . 
H 6 HOH A 38 640 640 HOH HOH . 
H 6 HOH A 39 641 641 HOH HOH . 
H 6 HOH A 40 642 642 HOH HOH . 
H 6 HOH A 41 643 643 HOH HOH . 
H 6 HOH A 42 644 644 HOH HOH . 
H 6 HOH A 43 645 645 HOH HOH . 
H 6 HOH A 44 646 646 HOH HOH . 
H 6 HOH A 45 647 647 HOH HOH . 
H 6 HOH A 46 648 648 HOH HOH . 
H 6 HOH A 47 649 649 HOH HOH . 
H 6 HOH A 48 650 650 HOH HOH . 
H 6 HOH A 49 651 651 HOH HOH . 
H 6 HOH A 50 652 652 HOH HOH . 
H 6 HOH A 51 653 653 HOH HOH . 
H 6 HOH A 52 654 654 HOH HOH . 
H 6 HOH A 53 655 655 HOH HOH . 
H 6 HOH A 54 657 657 HOH HOH . 
H 6 HOH A 55 658 658 HOH HOH . 
H 6 HOH A 56 659 659 HOH HOH . 
H 6 HOH A 57 660 660 HOH HOH . 
H 6 HOH A 58 661 661 HOH HOH . 
H 6 HOH A 59 662 662 HOH HOH . 
H 6 HOH A 60 663 663 HOH HOH . 
H 6 HOH A 61 664 664 HOH HOH . 
H 6 HOH A 62 665 665 HOH HOH . 
H 6 HOH A 63 666 666 HOH HOH . 
H 6 HOH A 64 667 667 HOH HOH . 
H 6 HOH A 65 669 669 HOH HOH . 
H 6 HOH A 66 670 670 HOH HOH . 
H 6 HOH A 67 671 671 HOH HOH . 
H 6 HOH A 68 672 672 HOH HOH . 
H 6 HOH A 69 673 673 HOH HOH . 
H 6 HOH A 70 674 674 HOH HOH . 
H 6 HOH A 71 675 675 HOH HOH . 
H 6 HOH A 72 676 676 HOH HOH . 
H 6 HOH A 73 677 677 HOH HOH . 
H 6 HOH A 74 678 678 HOH HOH . 
H 6 HOH A 75 679 679 HOH HOH . 
H 6 HOH A 76 682 682 HOH HOH . 
H 6 HOH A 77 683 683 HOH HOH . 
H 6 HOH A 78 684 684 HOH HOH . 
H 6 HOH A 79 685 685 HOH HOH . 
H 6 HOH A 80 686 686 HOH HOH . 
H 6 HOH A 81 687 687 HOH HOH . 
H 6 HOH A 82 688 688 HOH HOH . 
H 6 HOH A 83 689 689 HOH HOH . 
H 6 HOH A 84 690 690 HOH HOH . 
H 6 HOH A 85 691 691 HOH HOH . 
H 6 HOH A 86 692 692 HOH HOH . 
H 6 HOH A 87 693 693 HOH HOH . 
H 6 HOH A 88 694 694 HOH HOH . 
H 6 HOH A 89 695 695 HOH HOH . 
H 6 HOH A 90 696 696 HOH HOH . 
H 6 HOH A 91 697 697 HOH HOH . 
H 6 HOH A 92 698 698 HOH HOH . 
H 6 HOH A 93 699 699 HOH HOH . 
H 6 HOH A 94 700 700 HOH HOH . 
H 6 HOH A 95 701 701 HOH HOH . 
H 6 HOH A 96 702 702 HOH HOH . 
H 6 HOH A 97 703 703 HOH HOH . 
H 6 HOH A 98 704 704 HOH HOH . 
H 6 HOH A 99 705 705 HOH HOH . 
H 6 HOH A 100 706 706 HOH HOH . 
H 6 HOH A 101 707 707 HOH HOH . 
H 6 HOH A 102 709 709 HOH HOH . 
H 6 HOH A 103 710 710 HOH HOH . 
H 6 HOH A 104 711 711 HOH HOH . 
H 6 HOH A 105 712 712 HOH HOH . 
H 6 HOH A 106 713 713 HOH HOH . 
H 6 HOH A 107 714 714 HOH HOH . 
H 6 HOH A 108 715 715 HOH HOH . 
H 6 HOH A 109 716 716 HOH HOH . 
H 6 HOH A 110 717 717 HOH HOH . 
H 6 HOH A 111 718 718 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PHE . . . B 2 84.024 73.285 24.315 1 25.13 ? N PHE 601 A 1 
HETATM 2 C CA PHE . . . B 2 82.846 72.667 25.045 1 25.84 ? CA PHE 601 A 1 
HETATM 3 C C PHE . . . B 2 81.685 72.467 24.033 1 26.17 ? C PHE 601 A 1 
HETATM 4 O O PHE . . . B 2 81.984 72.466 22.803 1 26.52 ? O PHE 601 A 1 
HETATM 5 C CB PHE . . . B 2 82.434 73.489 26.275 1 24.95 ? CB PHE 601 A 1 
HETATM 6 C CG PHE . . . B 2 83.367 73.299 27.468 1 29.64 ? CG PHE 601 A 1 
HETATM 7 C CD1 PHE . . . B 2 83.349 72.099 28.202 1 31.16 ? CD1 PHE 601 A 1 
HETATM 8 C CD2 PHE . . . B 2 84.261 74.279 27.839 1 29.4 ? CD2 PHE 601 A 1 
HETATM 9 C CE1 PHE . . . B 2 84.196 71.902 29.245 1 34.33 ? CE1 PHE 601 A 1 
HETATM 10 C CE2 PHE . . . B 2 85.106 74.095 28.891 1 29.61 ? CE2 PHE 601 A 1 
HETATM 11 C CZ PHE . . . B 2 85.102 72.916 29.606 1 31.2 ? CZ PHE 601 A 1 
HETATM 12 O OXT PHE . . . B 2 80.495 72.274 24.368 1 26.45 ? OXT PHE 601 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#