data_3LKY # _model_server_result.job_id Tn7XG7maBYAE4RYfMr18Yg _model_server_result.datetime_utc '2024-10-20 13:04:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":122}' # _entry.id 3LKY # _exptl.entry_id 3LKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LKY _cell.length_a 48.6 _cell.length_b 48.6 _cell.length_c 94.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 125 n n C1 C2 GOL sing 126 n n C1 H11 GOL sing 127 n n C1 H12 GOL sing 128 n n O1 HO1 GOL sing 129 n n C2 O2 GOL sing 130 n n C2 C3 GOL sing 131 n n C2 H2 GOL sing 132 n n O2 HO2 GOL sing 133 n n C3 O3 GOL sing 134 n n C3 H31 GOL sing 135 n n C3 H32 GOL sing 136 n n O3 HO3 GOL sing 137 n n # _atom_sites.entry_id 3LKY _atom_sites.fract_transf_matrix[1][1] 0.020576 _atom_sites.fract_transf_matrix[1][2] 0.01188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 122 1 GOL GOL . C 2 GOL A 1 123 2 GOL GOL . D 2 GOL A 1 124 3 GOL GOL . E 3 EDO A 1 125 4 EDO EDO . F 3 EDO A 1 126 5 EDO EDO . G 4 SO4 A 1 127 6 SO4 SO4 . H 4 SO4 A 1 128 7 SO4 SO4 . I 4 SO4 A 1 129 8 SO4 SO4 . J 5 HOH A 1 130 1 HOH HOH . J 5 HOH A 2 131 2 HOH HOH . J 5 HOH A 3 132 3 HOH HOH . J 5 HOH A 4 133 4 HOH HOH . J 5 HOH A 5 134 5 HOH HOH . J 5 HOH A 6 135 6 HOH HOH . J 5 HOH A 7 136 7 HOH HOH . J 5 HOH A 8 137 8 HOH HOH . J 5 HOH A 9 138 9 HOH HOH . J 5 HOH A 10 139 10 HOH HOH . J 5 HOH A 11 140 11 HOH HOH . J 5 HOH A 12 141 12 HOH HOH . J 5 HOH A 13 142 13 HOH HOH . J 5 HOH A 14 143 14 HOH HOH . J 5 HOH A 15 144 15 HOH HOH . J 5 HOH A 16 145 16 HOH HOH . J 5 HOH A 17 146 17 HOH HOH . J 5 HOH A 18 147 18 HOH HOH . J 5 HOH A 19 148 19 HOH HOH . J 5 HOH A 20 149 20 HOH HOH . J 5 HOH A 21 150 21 HOH HOH . J 5 HOH A 22 151 22 HOH HOH . J 5 HOH A 23 152 23 HOH HOH . J 5 HOH A 24 153 24 HOH HOH . J 5 HOH A 25 154 25 HOH HOH . J 5 HOH A 26 155 26 HOH HOH . J 5 HOH A 27 156 27 HOH HOH . J 5 HOH A 28 157 28 HOH HOH . J 5 HOH A 29 158 29 HOH HOH . J 5 HOH A 30 159 30 HOH HOH . J 5 HOH A 31 160 31 HOH HOH . J 5 HOH A 32 161 32 HOH HOH . J 5 HOH A 33 162 33 HOH HOH . J 5 HOH A 34 163 34 HOH HOH . J 5 HOH A 35 164 35 HOH HOH . J 5 HOH A 36 165 36 HOH HOH . J 5 HOH A 37 166 37 HOH HOH . J 5 HOH A 38 167 38 HOH HOH . J 5 HOH A 39 168 39 HOH HOH . J 5 HOH A 40 169 40 HOH HOH . J 5 HOH A 41 170 41 HOH HOH . J 5 HOH A 42 171 42 HOH HOH . J 5 HOH A 43 172 43 HOH HOH . J 5 HOH A 44 173 44 HOH HOH . J 5 HOH A 45 174 45 HOH HOH . J 5 HOH A 46 175 46 HOH HOH . J 5 HOH A 47 176 47 HOH HOH . J 5 HOH A 48 177 48 HOH HOH . J 5 HOH A 49 178 49 HOH HOH . J 5 HOH A 50 179 50 HOH HOH . J 5 HOH A 51 180 51 HOH HOH . J 5 HOH A 52 181 52 HOH HOH . J 5 HOH A 53 182 53 HOH HOH . J 5 HOH A 54 183 54 HOH HOH . J 5 HOH A 55 184 55 HOH HOH . J 5 HOH A 56 185 56 HOH HOH . J 5 HOH A 57 186 57 HOH HOH . J 5 HOH A 58 187 58 HOH HOH . J 5 HOH A 59 188 59 HOH HOH . J 5 HOH A 60 189 60 HOH HOH . J 5 HOH A 61 190 61 HOH HOH . J 5 HOH A 62 191 62 HOH HOH . J 5 HOH A 63 192 63 HOH HOH . J 5 HOH A 64 193 64 HOH HOH . J 5 HOH A 65 194 65 HOH HOH . J 5 HOH A 66 195 66 HOH HOH . J 5 HOH A 67 196 67 HOH HOH . J 5 HOH A 68 197 68 HOH HOH . J 5 HOH A 69 198 69 HOH HOH . J 5 HOH A 70 199 70 HOH HOH . J 5 HOH A 71 200 71 HOH HOH . J 5 HOH A 72 201 72 HOH HOH . J 5 HOH A 73 202 73 HOH HOH . J 5 HOH A 74 203 74 HOH HOH . J 5 HOH A 75 204 75 HOH HOH . J 5 HOH A 76 205 76 HOH HOH . J 5 HOH A 77 206 77 HOH HOH . J 5 HOH A 78 207 78 HOH HOH . J 5 HOH A 79 208 79 HOH HOH . J 5 HOH A 80 209 80 HOH HOH . J 5 HOH A 81 210 81 HOH HOH . J 5 HOH A 82 211 82 HOH HOH . J 5 HOH A 83 212 83 HOH HOH . J 5 HOH A 84 213 84 HOH HOH . J 5 HOH A 85 214 85 HOH HOH . J 5 HOH A 86 215 86 HOH HOH . J 5 HOH A 87 216 87 HOH HOH . J 5 HOH A 88 217 88 HOH HOH . J 5 HOH A 89 218 89 HOH HOH . J 5 HOH A 90 219 90 HOH HOH . J 5 HOH A 91 220 91 HOH HOH . J 5 HOH A 92 221 92 HOH HOH . J 5 HOH A 93 222 93 HOH HOH . J 5 HOH A 94 223 94 HOH HOH . J 5 HOH A 95 224 95 HOH HOH . J 5 HOH A 96 225 96 HOH HOH . J 5 HOH A 97 226 97 HOH HOH . J 5 HOH A 98 227 98 HOH HOH . J 5 HOH A 99 228 99 HOH HOH . J 5 HOH A 100 229 100 HOH HOH . J 5 HOH A 101 230 101 HOH HOH . J 5 HOH A 102 231 102 HOH HOH . J 5 HOH A 103 232 103 HOH HOH . J 5 HOH A 104 233 104 HOH HOH . J 5 HOH A 105 234 105 HOH HOH . J 5 HOH A 106 235 106 HOH HOH . J 5 HOH A 107 236 107 HOH HOH . J 5 HOH A 108 237 108 HOH HOH . J 5 HOH A 109 238 109 HOH HOH . J 5 HOH A 110 239 110 HOH HOH . J 5 HOH A 111 240 111 HOH HOH . J 5 HOH A 112 241 112 HOH HOH . J 5 HOH A 113 242 113 HOH HOH . J 5 HOH A 114 243 114 HOH HOH . J 5 HOH A 115 244 115 HOH HOH . J 5 HOH A 116 245 116 HOH HOH . J 5 HOH A 117 246 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 13.588 37.792 10.836 1 24.51 ? C1 GOL 122 A 1 HETATM 2 O O1 GOL . . . B 2 12.844 37.909 9.631 1 23.14 ? O1 GOL 122 A 1 HETATM 3 C C2 GOL . . . B 2 12.661 37.931 12.111 1 21.99 ? C2 GOL 122 A 1 HETATM 4 O O2 GOL . . . B 2 12.45 36.671 12.792 1 15.63 ? O2 GOL 122 A 1 HETATM 5 C C3 GOL . . . B 2 13.504 38.832 12.91 1 27.55 ? C3 GOL 122 A 1 HETATM 6 O O3 GOL . . . B 2 14.764 38.265 12.767 1 19.44 ? O3 GOL 122 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #