data_3LL2
#
_model_server_result.job_id            WSZZgKkoCLIkdf1mwypAjA 
_model_server_result.datetime_utc      '2024-12-23 11:34:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ll2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":136}' 
#
_entry.id    3LL2 
#
_exptl.entry_id    3LL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LL2 
_cell.length_a            90.5 
_cell.length_b            90.5 
_cell.length_c            27.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LL2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 MAN MAN C1 O1 . O3 HO3 . sing 
2 ? 2 3 2 MAN MAN C1 O1 . O2 HO2 . sing 
3 ? 2 4 3 MAN MAN C1 O1 . O2 HO2 . sing 
4 ? 2 5 1 MAN MAN C1 O1 . O6 HO6 . sing 
5 ? 2 6 5 MAN MAN C1 O1 . O3 HO3 . sing 
6 ? 2 7 6 MAN MAN C1 O1 . O2 HO2 . sing 
7 ? 2 8 5 MAN MAN C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B MAN 1 B 1 MAN B 3 MAN 
2 n B MAN 2 B 2 MAN B 9 MAN 
2 n B MAN 3 B 3 MAN B 10 MAN 
2 n B MAN 4 B 4 MAN B 11 MAN 
2 n B MAN 5 B 5 MAN B 4 MAN 
2 n B MAN 6 B 6 MAN B 7 MAN 
2 n B MAN 7 B 7 MAN B 8 MAN 
2 n B MAN 8 B 8 MAN B 5 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3 MAN . B MAN 1 1_555 B C1 MAN . B MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale2 B O6 MAN . B MAN 1 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale3 B O2 MAN . B MAN 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale4 B O2 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
covale ? covale5 B O3 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale6 B O6 MAN . B MAN 5 1_555 B C1 MAN . B MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale7 B O2 MAN . B MAN 6 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 257 n n 
C1 C2 PEG sing 258 n n 
C1 H11 PEG sing 259 n n 
C1 H12 PEG sing 260 n n 
O1 HO1 PEG sing 261 n n 
C2 O2 PEG sing 262 n n 
C2 H21 PEG sing 263 n n 
C2 H22 PEG sing 264 n n 
O2 C3 PEG sing 265 n n 
C3 C4 PEG sing 266 n n 
C3 H31 PEG sing 267 n n 
C3 H32 PEG sing 268 n n 
C4 O4 PEG sing 269 n n 
C4 H41 PEG sing 270 n n 
C4 H42 PEG sing 271 n n 
O4 HO4 PEG sing 272 n n 
#
_atom_sites.entry_id                     3LL2 
_atom_sites.fract_transf_matrix[1][1]    0.01105 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.035971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 130 1 EDO EDO . 
D 3 EDO A 1 131 2 EDO EDO . 
E 3 EDO A 1 132 3 EDO EDO . 
F 3 EDO A 1 133 4 EDO EDO . 
G 3 EDO A 1 134 5 EDO EDO . 
H 3 EDO A 1 135 6 EDO EDO . 
I 4 PEG A 1 136 7 PEG PEG . 
J 3 EDO A 1 137 8 EDO EDO . 
K 5 HOH A 1 138 138 HOH HOH . 
K 5 HOH A 2 139 139 HOH HOH . 
K 5 HOH A 3 140 140 HOH HOH . 
K 5 HOH A 4 141 141 HOH HOH . 
K 5 HOH A 5 142 142 HOH HOH . 
K 5 HOH A 6 143 143 HOH HOH . 
K 5 HOH A 7 144 144 HOH HOH . 
K 5 HOH A 8 145 145 HOH HOH . 
K 5 HOH A 9 146 146 HOH HOH . 
K 5 HOH A 10 147 147 HOH HOH . 
K 5 HOH A 11 148 148 HOH HOH . 
K 5 HOH A 12 149 149 HOH HOH . 
K 5 HOH A 13 150 150 HOH HOH . 
K 5 HOH A 14 151 151 HOH HOH . 
K 5 HOH A 15 152 152 HOH HOH . 
K 5 HOH A 16 153 153 HOH HOH . 
K 5 HOH A 17 154 154 HOH HOH . 
K 5 HOH A 18 155 155 HOH HOH . 
K 5 HOH A 19 156 156 HOH HOH . 
K 5 HOH A 20 157 157 HOH HOH . 
K 5 HOH A 21 158 158 HOH HOH . 
K 5 HOH A 22 159 159 HOH HOH . 
K 5 HOH A 23 160 160 HOH HOH . 
K 5 HOH A 24 161 161 HOH HOH . 
K 5 HOH A 25 162 162 HOH HOH . 
K 5 HOH A 26 163 163 HOH HOH . 
K 5 HOH A 27 164 1 HOH HOH . 
K 5 HOH A 28 165 2 HOH HOH . 
K 5 HOH A 29 166 3 HOH HOH . 
K 5 HOH A 30 167 4 HOH HOH . 
K 5 HOH A 31 168 5 HOH HOH . 
K 5 HOH A 32 169 6 HOH HOH . 
K 5 HOH A 33 170 7 HOH HOH . 
K 5 HOH A 34 171 8 HOH HOH . 
K 5 HOH A 35 172 9 HOH HOH . 
K 5 HOH A 36 173 10 HOH HOH . 
K 5 HOH A 37 174 11 HOH HOH . 
K 5 HOH A 38 175 12 HOH HOH . 
K 5 HOH A 39 176 13 HOH HOH . 
K 5 HOH A 40 177 14 HOH HOH . 
K 5 HOH A 41 178 15 HOH HOH . 
K 5 HOH A 42 179 16 HOH HOH . 
K 5 HOH A 43 180 17 HOH HOH . 
K 5 HOH A 44 181 18 HOH HOH . 
K 5 HOH A 45 182 19 HOH HOH . 
K 5 HOH A 46 183 20 HOH HOH . 
K 5 HOH A 47 184 21 HOH HOH . 
K 5 HOH A 48 185 22 HOH HOH . 
K 5 HOH A 49 186 23 HOH HOH . 
K 5 HOH A 50 187 24 HOH HOH . 
K 5 HOH A 51 188 25 HOH HOH . 
K 5 HOH A 52 189 26 HOH HOH . 
K 5 HOH A 53 190 27 HOH HOH . 
K 5 HOH A 54 191 28 HOH HOH . 
K 5 HOH A 55 192 29 HOH HOH . 
K 5 HOH A 56 193 30 HOH HOH . 
K 5 HOH A 57 194 31 HOH HOH . 
K 5 HOH A 58 195 32 HOH HOH . 
K 5 HOH A 59 196 33 HOH HOH . 
K 5 HOH A 60 197 34 HOH HOH . 
K 5 HOH A 61 198 35 HOH HOH . 
K 5 HOH A 62 199 36 HOH HOH . 
K 5 HOH A 63 200 37 HOH HOH . 
K 5 HOH A 64 201 38 HOH HOH . 
K 5 HOH A 65 202 39 HOH HOH . 
K 5 HOH A 66 203 40 HOH HOH . 
K 5 HOH A 67 204 41 HOH HOH . 
K 5 HOH A 68 205 42 HOH HOH . 
K 5 HOH A 69 206 43 HOH HOH . 
K 5 HOH A 70 207 44 HOH HOH . 
K 5 HOH A 71 208 45 HOH HOH . 
K 5 HOH A 72 209 46 HOH HOH . 
K 5 HOH A 73 210 47 HOH HOH . 
K 5 HOH A 74 211 48 HOH HOH . 
K 5 HOH A 75 212 49 HOH HOH . 
K 5 HOH A 76 213 50 HOH HOH . 
K 5 HOH A 77 214 51 HOH HOH . 
K 5 HOH A 78 215 52 HOH HOH . 
K 5 HOH A 79 216 53 HOH HOH . 
K 5 HOH A 80 217 54 HOH HOH . 
K 5 HOH A 81 218 55 HOH HOH . 
K 5 HOH A 82 219 56 HOH HOH . 
K 5 HOH A 83 220 57 HOH HOH . 
K 5 HOH A 84 221 58 HOH HOH . 
K 5 HOH A 85 222 59 HOH HOH . 
K 5 HOH A 86 223 60 HOH HOH . 
K 5 HOH A 87 224 61 HOH HOH . 
K 5 HOH A 88 225 62 HOH HOH . 
K 5 HOH A 89 226 63 HOH HOH . 
K 5 HOH A 90 227 64 HOH HOH . 
K 5 HOH A 91 228 65 HOH HOH . 
K 5 HOH A 92 229 66 HOH HOH . 
K 5 HOH A 93 230 67 HOH HOH . 
K 5 HOH A 94 231 68 HOH HOH . 
K 5 HOH A 95 232 69 HOH HOH . 
K 5 HOH A 96 233 70 HOH HOH . 
K 5 HOH A 97 234 71 HOH HOH . 
K 5 HOH A 98 235 72 HOH HOH . 
K 5 HOH A 99 236 73 HOH HOH . 
K 5 HOH A 100 237 74 HOH HOH . 
K 5 HOH A 101 238 75 HOH HOH . 
K 5 HOH A 102 239 76 HOH HOH . 
K 5 HOH A 103 240 77 HOH HOH . 
K 5 HOH A 104 241 78 HOH HOH . 
K 5 HOH A 105 242 79 HOH HOH . 
K 5 HOH A 106 243 80 HOH HOH . 
K 5 HOH A 107 244 81 HOH HOH . 
K 5 HOH A 108 245 82 HOH HOH . 
K 5 HOH A 109 246 83 HOH HOH . 
K 5 HOH A 110 247 84 HOH HOH . 
K 5 HOH A 111 248 85 HOH HOH . 
K 5 HOH A 112 249 86 HOH HOH . 
K 5 HOH A 113 250 87 HOH HOH . 
K 5 HOH A 114 251 88 HOH HOH . 
K 5 HOH A 115 252 89 HOH HOH . 
K 5 HOH A 116 253 90 HOH HOH . 
K 5 HOH A 117 254 91 HOH HOH . 
K 5 HOH A 118 255 92 HOH HOH . 
K 5 HOH A 119 256 93 HOH HOH . 
K 5 HOH A 120 257 94 HOH HOH . 
K 5 HOH A 121 258 95 HOH HOH . 
K 5 HOH A 122 259 96 HOH HOH . 
K 5 HOH A 123 260 97 HOH HOH . 
K 5 HOH A 124 261 98 HOH HOH . 
K 5 HOH A 125 262 99 HOH HOH . 
K 5 HOH A 126 263 100 HOH HOH . 
K 5 HOH A 127 264 101 HOH HOH . 
K 5 HOH A 128 265 102 HOH HOH . 
K 5 HOH A 129 266 103 HOH HOH . 
K 5 HOH A 130 267 104 HOH HOH . 
K 5 HOH A 131 268 105 HOH HOH . 
K 5 HOH A 132 269 106 HOH HOH . 
K 5 HOH A 133 270 107 HOH HOH . 
K 5 HOH A 134 271 108 HOH HOH . 
K 5 HOH A 135 272 109 HOH HOH . 
K 5 HOH A 136 273 110 HOH HOH . 
K 5 HOH A 137 274 111 HOH HOH . 
K 5 HOH A 138 275 112 HOH HOH . 
K 5 HOH A 139 276 113 HOH HOH . 
K 5 HOH A 140 277 114 HOH HOH . 
K 5 HOH A 141 278 115 HOH HOH . 
K 5 HOH A 142 279 116 HOH HOH . 
K 5 HOH A 143 280 117 HOH HOH . 
K 5 HOH A 144 281 118 HOH HOH . 
K 5 HOH A 145 282 119 HOH HOH . 
K 5 HOH A 146 283 120 HOH HOH . 
K 5 HOH A 147 284 121 HOH HOH . 
K 5 HOH A 148 285 122 HOH HOH . 
K 5 HOH A 149 286 123 HOH HOH . 
K 5 HOH A 150 287 124 HOH HOH . 
K 5 HOH A 151 288 125 HOH HOH . 
K 5 HOH A 152 289 126 HOH HOH . 
K 5 HOH A 153 290 127 HOH HOH . 
K 5 HOH A 154 291 128 HOH HOH . 
K 5 HOH A 155 292 129 HOH HOH . 
K 5 HOH A 156 293 130 HOH HOH . 
K 5 HOH A 157 294 131 HOH HOH . 
K 5 HOH A 158 295 132 HOH HOH . 
K 5 HOH A 159 296 133 HOH HOH . 
K 5 HOH A 160 297 134 HOH HOH . 
K 5 HOH A 161 298 135 HOH HOH . 
K 5 HOH A 162 299 136 HOH HOH . 
K 5 HOH A 163 300 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . I 4 15.982 42.961 21.973 1 20.03 ? C1 PEG 136 A 1 
HETATM 2 O O1 PEG . . . I 4 15.166 41.818 22.096 1 19.25 ? O1 PEG 136 A 1 
HETATM 3 C C2 PEG . . . I 4 17.462 42.872 22.533 1 17.43 ? C2 PEG 136 A 1 
HETATM 4 O O2 PEG . . . I 4 17.368 42.858 23.998 1 22.25 ? O2 PEG 136 A 1 
HETATM 5 C C3 PEG . . . I 4 18.458 43.171 24.897 1 19.27 ? C3 PEG 136 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           379 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           5 
#