data_3LL9
#
_model_server_result.job_id            mHTi2I_ST6ykJ_hfaWvasg 
_model_server_result.datetime_utc      '2025-02-28 01:35:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ll9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":267}' 
#
_entry.id    3LL9 
#
_exptl.entry_id    3LL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.59 
_cell.angle_gamma         90 
_cell.entry_id            3LL9 
_cell.length_a            119.672 
_cell.length_b            96.36 
_cell.length_c            72.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 3 A HIS -1 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ILE 5 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C LEU 44 A LEU 41 1_555 A N MSE 45 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale4 A C MSE 45 A MSE 42 1_555 A N ILE 46 A ILE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale5 A C SER 107 A SER 104 1_555 A N MSE 108 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 108 A MSE 105 1_555 A N GLN 109 A GLN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale7 A C GLY 136 A GLY 133 1_555 A N MSE 137 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 137 A MSE 134 1_555 A N VAL 138 A VAL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C LEU 171 A LEU 168 1_555 A N MSE 172 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 172 A MSE 169 1_555 A N PRO 173 A PRO 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 A C GLY 222 A GLY 219 1_555 A N MSE 223 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 A C MSE 223 A MSE 220 1_555 A N VAL 224 A VAL 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale13 B C HIS 3 B HIS -1 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 B C MSE 4 B MSE 1 1_555 B N ILE 5 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C LEU 44 B LEU 41 1_555 B N MSE 45 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C MSE 45 B MSE 42 1_555 B N ILE 46 B ILE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale17 B C SER 107 B SER 104 1_555 B N MSE 108 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale18 B C MSE 108 B MSE 105 1_555 B N GLN 109 B GLN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 B C GLY 136 B GLY 133 1_555 B N MSE 137 B MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale20 B C MSE 137 B MSE 134 1_555 B N VAL 138 B VAL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale21 B C LEU 171 B LEU 168 1_555 B N MSE 172 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale22 B C MSE 172 B MSE 169 1_555 B N PRO 173 B PRO 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale23 B C GLY 222 B GLY 219 1_555 B N MSE 223 B MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale24 B C MSE 223 B MSE 220 1_555 B N VAL 224 B VAL 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     3LL9 
_atom_sites.fract_transf_matrix[1][1]    0.008356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00494 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 267 100 ADP ADP . 
D 3 GOL B 1 267 1 GOL GOL . 
E 2 ADP B 1 268 200 ADP ADP . 
F 4 HOH A 1 268 1 HOH HOH . 
F 4 HOH A 2 269 2 HOH HOH . 
F 4 HOH A 3 270 3 HOH HOH . 
F 4 HOH A 4 271 4 HOH HOH . 
F 4 HOH A 5 272 5 HOH HOH . 
F 4 HOH A 6 273 6 HOH HOH . 
F 4 HOH A 7 274 7 HOH HOH . 
F 4 HOH A 8 275 8 HOH HOH . 
F 4 HOH A 9 276 9 HOH HOH . 
F 4 HOH A 10 277 14 HOH HOH . 
F 4 HOH A 11 278 15 HOH HOH . 
F 4 HOH A 12 279 16 HOH HOH . 
F 4 HOH A 13 280 17 HOH HOH . 
F 4 HOH A 14 281 18 HOH HOH . 
F 4 HOH A 15 282 19 HOH HOH . 
F 4 HOH A 16 283 20 HOH HOH . 
F 4 HOH A 17 284 21 HOH HOH . 
F 4 HOH A 18 285 22 HOH HOH . 
F 4 HOH A 19 286 28 HOH HOH . 
F 4 HOH A 20 287 29 HOH HOH . 
F 4 HOH A 21 288 30 HOH HOH . 
F 4 HOH A 22 289 31 HOH HOH . 
F 4 HOH A 23 290 32 HOH HOH . 
F 4 HOH A 24 291 41 HOH HOH . 
F 4 HOH A 25 292 42 HOH HOH . 
F 4 HOH A 26 293 44 HOH HOH . 
F 4 HOH A 27 294 45 HOH HOH . 
F 4 HOH A 28 295 47 HOH HOH . 
F 4 HOH A 29 296 48 HOH HOH . 
F 4 HOH A 30 297 49 HOH HOH . 
F 4 HOH A 31 298 51 HOH HOH . 
F 4 HOH A 32 299 54 HOH HOH . 
F 4 HOH A 33 300 55 HOH HOH . 
F 4 HOH A 34 301 56 HOH HOH . 
F 4 HOH A 35 302 57 HOH HOH . 
F 4 HOH A 36 303 59 HOH HOH . 
F 4 HOH A 37 304 65 HOH HOH . 
F 4 HOH A 38 305 66 HOH HOH . 
F 4 HOH A 39 306 68 HOH HOH . 
F 4 HOH A 40 307 74 HOH HOH . 
F 4 HOH A 41 308 76 HOH HOH . 
F 4 HOH A 42 309 78 HOH HOH . 
F 4 HOH A 43 310 81 HOH HOH . 
F 4 HOH A 44 311 82 HOH HOH . 
F 4 HOH A 45 312 83 HOH HOH . 
F 4 HOH A 46 313 84 HOH HOH . 
F 4 HOH A 47 314 85 HOH HOH . 
F 4 HOH A 48 315 88 HOH HOH . 
F 4 HOH A 49 316 92 HOH HOH . 
F 4 HOH A 50 317 94 HOH HOH . 
F 4 HOH A 51 318 97 HOH HOH . 
F 4 HOH A 52 319 100 HOH HOH . 
F 4 HOH A 53 320 103 HOH HOH . 
F 4 HOH A 54 321 108 HOH HOH . 
F 4 HOH A 55 322 111 HOH HOH . 
F 4 HOH A 56 323 113 HOH HOH . 
G 4 HOH B 1 269 10 HOH HOH . 
G 4 HOH B 2 270 11 HOH HOH . 
G 4 HOH B 3 271 12 HOH HOH . 
G 4 HOH B 4 272 13 HOH HOH . 
G 4 HOH B 5 273 23 HOH HOH . 
G 4 HOH B 6 274 24 HOH HOH . 
G 4 HOH B 7 275 25 HOH HOH . 
G 4 HOH B 8 276 26 HOH HOH . 
G 4 HOH B 9 277 27 HOH HOH . 
G 4 HOH B 10 278 33 HOH HOH . 
G 4 HOH B 11 279 34 HOH HOH . 
G 4 HOH B 12 280 35 HOH HOH . 
G 4 HOH B 13 281 36 HOH HOH . 
G 4 HOH B 14 282 37 HOH HOH . 
G 4 HOH B 15 283 38 HOH HOH . 
G 4 HOH B 16 284 39 HOH HOH . 
G 4 HOH B 17 285 40 HOH HOH . 
G 4 HOH B 18 286 43 HOH HOH . 
G 4 HOH B 19 287 46 HOH HOH . 
G 4 HOH B 20 288 50 HOH HOH . 
G 4 HOH B 21 289 52 HOH HOH . 
G 4 HOH B 22 290 53 HOH HOH . 
G 4 HOH B 23 291 58 HOH HOH . 
G 4 HOH B 24 292 61 HOH HOH . 
G 4 HOH B 25 293 62 HOH HOH . 
G 4 HOH B 26 294 63 HOH HOH . 
G 4 HOH B 27 295 64 HOH HOH . 
G 4 HOH B 28 296 67 HOH HOH . 
G 4 HOH B 29 297 69 HOH HOH . 
G 4 HOH B 30 298 70 HOH HOH . 
G 4 HOH B 31 299 71 HOH HOH . 
G 4 HOH B 32 300 72 HOH HOH . 
G 4 HOH B 33 301 73 HOH HOH . 
G 4 HOH B 34 302 77 HOH HOH . 
G 4 HOH B 35 303 79 HOH HOH . 
G 4 HOH B 36 304 80 HOH HOH . 
G 4 HOH B 37 305 86 HOH HOH . 
G 4 HOH B 38 306 90 HOH HOH . 
G 4 HOH B 39 307 91 HOH HOH . 
G 4 HOH B 40 308 93 HOH HOH . 
G 4 HOH B 41 309 98 HOH HOH . 
G 4 HOH B 42 310 99 HOH HOH . 
G 4 HOH B 43 311 101 HOH HOH . 
G 4 HOH B 44 312 102 HOH HOH . 
G 4 HOH B 45 313 105 HOH HOH . 
G 4 HOH B 46 314 107 HOH HOH . 
G 4 HOH B 47 315 110 HOH HOH . 
G 4 HOH B 48 316 112 HOH HOH . 
G 4 HOH B 49 317 114 HOH HOH . 
G 4 HOH B 50 318 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 16.299 -27.491 13.772 1 53.98 ? C1 GOL 267 B 1 
HETATM 2 O O1 GOL . . . D 3 15.702 -26.767 14.851 1 59.27 ? O1 GOL 267 B 1 
HETATM 3 C C2 GOL . . . D 3 16.446 -26.371 12.731 1 60.73 ? C2 GOL 267 B 1 
HETATM 4 O O2 GOL . . . D 3 15.541 -25.291 13.101 1 52.25 ? O2 GOL 267 B 1 
HETATM 5 C C3 GOL . . . D 3 16.318 -26.855 11.278 1 56.59 ? C3 GOL 267 B 1 
HETATM 6 O O3 GOL . . . D 3 17.57 -27.049 10.629 1 58.27 ? O3 GOL 267 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#