data_3LLE # _model_server_result.job_id iNHiLgo-pC0BFGBXqAjR4w _model_server_result.datetime_utc '2024-12-18 21:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":92}' # _entry.id 3LLE # _exptl.entry_id 3LLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LLE _cell.length_a 46.267 _cell.length_b 46.267 _cell.length_c 172.413 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 85 A CYS 84 1_555 E CAG SGE . A SGE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 85 B CYS 84 1_555 H CAG SGE . B SGE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc13 C CA CA . A CA 92 1_555 I O HOH . A HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc14 D CA CA . A CA 93 1_555 I O HOH . A HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc15 B O SER 19 B SER 18 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc16 B O GLU 22 B GLU 21 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc17 B O ASP 24 B ASP 23 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc18 B O LYS 27 B LYS 26 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc19 B OE1 GLU 32 B GLU 31 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc20 B OE2 GLU 32 B GLU 31 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc21 B OD1 ASP 62 B ASP 61 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc22 B OD1 ASP 64 B ASP 63 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc23 B OD1 ASP 66 B ASP 65 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc24 B O GLU 68 B GLU 67 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc25 B OE1 GLU 73 B GLU 72 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc26 B OE2 GLU 73 B GLU 72 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc27 F CA CA . B CA 92 1_555 J O HOH . B HOH 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc28 G CA CA . B CA 93 1_555 J O HOH . B HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LLE _atom_sites.fract_transf_matrix[1][1] 0.021614 _atom_sites.fract_transf_matrix[1][2] 0.012479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 92 1 CA CA . D 2 CA A 1 93 2 CA CA . E 3 SGE A 1 94 1 SGE SGE . F 2 CA B 1 92 3 CA CA . G 2 CA B 1 93 4 CA CA . H 3 SGE B 1 94 1 SGE SGE . I 4 HOH A 1 95 95 HOH HOH . I 4 HOH A 2 96 96 HOH HOH . I 4 HOH A 3 97 97 HOH HOH . I 4 HOH A 4 98 1 HOH HOH . I 4 HOH A 5 99 2 HOH HOH . I 4 HOH A 6 100 100 HOH HOH . I 4 HOH A 7 101 101 HOH HOH . I 4 HOH A 8 102 8 HOH HOH . I 4 HOH A 9 103 103 HOH HOH . I 4 HOH A 10 104 9 HOH HOH . I 4 HOH A 11 105 105 HOH HOH . I 4 HOH A 12 106 106 HOH HOH . I 4 HOH A 13 107 10 HOH HOH . I 4 HOH A 14 108 108 HOH HOH . I 4 HOH A 15 109 11 HOH HOH . I 4 HOH A 16 110 110 HOH HOH . I 4 HOH A 17 111 111 HOH HOH . I 4 HOH A 18 112 112 HOH HOH . I 4 HOH A 19 113 113 HOH HOH . I 4 HOH A 20 114 114 HOH HOH . I 4 HOH A 21 115 115 HOH HOH . I 4 HOH A 22 116 14 HOH HOH . I 4 HOH A 23 117 117 HOH HOH . I 4 HOH A 24 118 118 HOH HOH . I 4 HOH A 25 119 16 HOH HOH . I 4 HOH A 26 120 120 HOH HOH . I 4 HOH A 27 121 121 HOH HOH . I 4 HOH A 28 122 122 HOH HOH . I 4 HOH A 29 123 123 HOH HOH . I 4 HOH A 30 124 18 HOH HOH . I 4 HOH A 31 125 125 HOH HOH . I 4 HOH A 32 126 19 HOH HOH . I 4 HOH A 33 127 127 HOH HOH . I 4 HOH A 34 128 20 HOH HOH . I 4 HOH A 35 129 21 HOH HOH . I 4 HOH A 36 130 24 HOH HOH . I 4 HOH A 37 131 25 HOH HOH . I 4 HOH A 38 132 26 HOH HOH . I 4 HOH A 39 133 27 HOH HOH . I 4 HOH A 40 134 28 HOH HOH . I 4 HOH A 41 135 30 HOH HOH . I 4 HOH A 42 136 31 HOH HOH . I 4 HOH A 43 137 32 HOH HOH . I 4 HOH A 44 138 34 HOH HOH . I 4 HOH A 45 139 35 HOH HOH . I 4 HOH A 46 140 38 HOH HOH . I 4 HOH A 47 141 40 HOH HOH . I 4 HOH A 48 142 41 HOH HOH . I 4 HOH A 49 143 45 HOH HOH . I 4 HOH A 50 144 46 HOH HOH . I 4 HOH A 51 145 48 HOH HOH . I 4 HOH A 52 146 50 HOH HOH . I 4 HOH A 53 147 53 HOH HOH . I 4 HOH A 54 148 55 HOH HOH . I 4 HOH A 55 149 56 HOH HOH . I 4 HOH A 56 150 58 HOH HOH . I 4 HOH A 57 151 61 HOH HOH . I 4 HOH A 58 152 62 HOH HOH . I 4 HOH A 59 153 63 HOH HOH . I 4 HOH A 60 154 64 HOH HOH . I 4 HOH A 61 155 67 HOH HOH . I 4 HOH A 62 156 68 HOH HOH . I 4 HOH A 63 157 70 HOH HOH . I 4 HOH A 64 158 71 HOH HOH . I 4 HOH A 65 159 76 HOH HOH . I 4 HOH A 66 160 81 HOH HOH . I 4 HOH A 67 161 82 HOH HOH . I 4 HOH A 68 162 84 HOH HOH . I 4 HOH A 69 163 88 HOH HOH . I 4 HOH A 70 164 91 HOH HOH . I 4 HOH A 71 165 94 HOH HOH . J 4 HOH B 1 95 3 HOH HOH . J 4 HOH B 2 96 4 HOH HOH . J 4 HOH B 3 97 5 HOH HOH . J 4 HOH B 4 98 98 HOH HOH . J 4 HOH B 5 99 99 HOH HOH . J 4 HOH B 6 100 6 HOH HOH . J 4 HOH B 7 101 7 HOH HOH . J 4 HOH B 8 102 102 HOH HOH . J 4 HOH B 9 103 12 HOH HOH . J 4 HOH B 10 104 104 HOH HOH . J 4 HOH B 11 105 13 HOH HOH . J 4 HOH B 12 106 15 HOH HOH . J 4 HOH B 13 107 107 HOH HOH . J 4 HOH B 14 108 17 HOH HOH . J 4 HOH B 15 109 109 HOH HOH . J 4 HOH B 16 110 22 HOH HOH . J 4 HOH B 17 111 23 HOH HOH . J 4 HOH B 18 112 29 HOH HOH . J 4 HOH B 19 113 33 HOH HOH . J 4 HOH B 20 114 36 HOH HOH . J 4 HOH B 21 115 39 HOH HOH . J 4 HOH B 22 116 116 HOH HOH . J 4 HOH B 23 117 42 HOH HOH . J 4 HOH B 24 118 43 HOH HOH . J 4 HOH B 25 119 119 HOH HOH . J 4 HOH B 26 120 44 HOH HOH . J 4 HOH B 27 121 47 HOH HOH . J 4 HOH B 28 122 49 HOH HOH . J 4 HOH B 29 123 51 HOH HOH . J 4 HOH B 30 124 124 HOH HOH . J 4 HOH B 31 125 52 HOH HOH . J 4 HOH B 32 126 126 HOH HOH . J 4 HOH B 33 127 54 HOH HOH . J 4 HOH B 34 128 59 HOH HOH . J 4 HOH B 35 129 60 HOH HOH . J 4 HOH B 36 130 65 HOH HOH . J 4 HOH B 37 131 66 HOH HOH . J 4 HOH B 38 132 69 HOH HOH . J 4 HOH B 39 133 72 HOH HOH . J 4 HOH B 40 134 73 HOH HOH . J 4 HOH B 41 135 74 HOH HOH . J 4 HOH B 42 136 75 HOH HOH . J 4 HOH B 43 137 77 HOH HOH . J 4 HOH B 44 138 78 HOH HOH . J 4 HOH B 45 139 79 HOH HOH . J 4 HOH B 46 140 80 HOH HOH . J 4 HOH B 47 141 85 HOH HOH . J 4 HOH B 48 142 86 HOH HOH . J 4 HOH B 49 143 89 HOH HOH . J 4 HOH B 50 144 90 HOH HOH . J 4 HOH B 51 145 92 HOH HOH . J 4 HOH B 52 146 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.75 _atom_site.Cartn_y -19.102 _atom_site.Cartn_z -26.513 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 92 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #