data_3LLI # _model_server_result.job_id 29Gd-8eA_ASun0uMTAecMg _model_server_result.datetime_utc '2024-12-21 17:16:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":550}' # _entry.id 3LLI # _exptl.entry_id 3LLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LLI _cell.length_a 85.606 _cell.length_b 85.606 _cell.length_c 125.706 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 393 1_555 A SG CYS 120 A CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 164 A CYS 449 1_555 A SG CYS 167 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 224 A CYS 509 1_555 A SG CYS 227 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3LLI _atom_sites.fract_transf_matrix[1][1] 0.011681 _atom_sites.fract_transf_matrix[1][2] 0.006744 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 550 550 FAD FAD . C 3 HOH A 1 600 600 HOH HOH . C 3 HOH A 2 601 601 HOH HOH . C 3 HOH A 3 602 602 HOH HOH . C 3 HOH A 4 603 603 HOH HOH . C 3 HOH A 5 604 604 HOH HOH . C 3 HOH A 6 605 605 HOH HOH . C 3 HOH A 7 606 606 HOH HOH . C 3 HOH A 8 607 607 HOH HOH . C 3 HOH A 9 608 608 HOH HOH . C 3 HOH A 10 609 609 HOH HOH . C 3 HOH A 11 610 610 HOH HOH . C 3 HOH A 12 611 611 HOH HOH . C 3 HOH A 13 612 612 HOH HOH . C 3 HOH A 14 613 613 HOH HOH . C 3 HOH A 15 614 614 HOH HOH . C 3 HOH A 16 615 615 HOH HOH . C 3 HOH A 17 616 616 HOH HOH . C 3 HOH A 18 617 617 HOH HOH . C 3 HOH A 19 618 618 HOH HOH . C 3 HOH A 20 619 619 HOH HOH . C 3 HOH A 21 620 620 HOH HOH . C 3 HOH A 22 621 621 HOH HOH . C 3 HOH A 23 622 622 HOH HOH . C 3 HOH A 24 623 623 HOH HOH . C 3 HOH A 25 624 624 HOH HOH . C 3 HOH A 26 625 625 HOH HOH . C 3 HOH A 27 626 626 HOH HOH . C 3 HOH A 28 627 627 HOH HOH . C 3 HOH A 29 628 628 HOH HOH . C 3 HOH A 30 629 629 HOH HOH . C 3 HOH A 31 630 630 HOH HOH . C 3 HOH A 32 631 631 HOH HOH . C 3 HOH A 33 632 632 HOH HOH . C 3 HOH A 34 633 633 HOH HOH . C 3 HOH A 35 634 634 HOH HOH . C 3 HOH A 36 635 635 HOH HOH . C 3 HOH A 37 636 636 HOH HOH . C 3 HOH A 38 637 637 HOH HOH . C 3 HOH A 39 638 638 HOH HOH . C 3 HOH A 40 639 639 HOH HOH . C 3 HOH A 41 640 640 HOH HOH . C 3 HOH A 42 641 641 HOH HOH . C 3 HOH A 43 642 642 HOH HOH . C 3 HOH A 44 643 643 HOH HOH . C 3 HOH A 45 644 644 HOH HOH . C 3 HOH A 46 645 645 HOH HOH . C 3 HOH A 47 646 646 HOH HOH . C 3 HOH A 48 647 647 HOH HOH . C 3 HOH A 49 648 648 HOH HOH . C 3 HOH A 50 649 649 HOH HOH . C 3 HOH A 51 650 650 HOH HOH . C 3 HOH A 52 651 651 HOH HOH . C 3 HOH A 53 652 652 HOH HOH . C 3 HOH A 54 653 653 HOH HOH . C 3 HOH A 55 654 654 HOH HOH . C 3 HOH A 56 655 655 HOH HOH . C 3 HOH A 57 656 656 HOH HOH . C 3 HOH A 58 657 657 HOH HOH . C 3 HOH A 59 658 658 HOH HOH . C 3 HOH A 60 659 659 HOH HOH . C 3 HOH A 61 660 660 HOH HOH . C 3 HOH A 62 661 661 HOH HOH . C 3 HOH A 63 662 662 HOH HOH . C 3 HOH A 64 663 663 HOH HOH . C 3 HOH A 65 664 664 HOH HOH . C 3 HOH A 66 665 665 HOH HOH . C 3 HOH A 67 666 666 HOH HOH . C 3 HOH A 68 667 667 HOH HOH . C 3 HOH A 69 668 668 HOH HOH . C 3 HOH A 70 669 669 HOH HOH . C 3 HOH A 71 670 670 HOH HOH . C 3 HOH A 72 671 671 HOH HOH . C 3 HOH A 73 672 672 HOH HOH . C 3 HOH A 74 673 673 HOH HOH . C 3 HOH A 75 674 674 HOH HOH . C 3 HOH A 76 675 675 HOH HOH . C 3 HOH A 77 676 676 HOH HOH . C 3 HOH A 78 677 677 HOH HOH . C 3 HOH A 79 678 678 HOH HOH . C 3 HOH A 80 679 679 HOH HOH . C 3 HOH A 81 680 680 HOH HOH . C 3 HOH A 82 681 681 HOH HOH . C 3 HOH A 83 682 682 HOH HOH . C 3 HOH A 84 683 683 HOH HOH . C 3 HOH A 85 684 684 HOH HOH . C 3 HOH A 86 685 685 HOH HOH . C 3 HOH A 87 686 686 HOH HOH . C 3 HOH A 88 687 687 HOH HOH . C 3 HOH A 89 688 688 HOH HOH . C 3 HOH A 90 689 689 HOH HOH . C 3 HOH A 91 690 690 HOH HOH . C 3 HOH A 92 691 691 HOH HOH . C 3 HOH A 93 692 692 HOH HOH . C 3 HOH A 94 693 693 HOH HOH . C 3 HOH A 95 694 694 HOH HOH . C 3 HOH A 96 695 695 HOH HOH . C 3 HOH A 97 696 696 HOH HOH . C 3 HOH A 98 697 697 HOH HOH . C 3 HOH A 99 698 698 HOH HOH . C 3 HOH A 100 699 699 HOH HOH . C 3 HOH A 101 700 700 HOH HOH . C 3 HOH A 102 701 701 HOH HOH . C 3 HOH A 103 702 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -20.629 11.94 7.589 1 51.46 ? PA FAD 550 A 1 HETATM 2 O O1A FAD . . . B 2 -20.7 11.297 6.25 1 55.01 ? O1A FAD 550 A 1 HETATM 3 O O2A FAD . . . B 2 -21.798 12.047 8.504 1 55.27 ? O2A FAD 550 A 1 HETATM 4 O O5B FAD . . . B 2 -20.024 13.384 7.474 1 50.98 ? O5B FAD 550 A 1 HETATM 5 C C5B FAD . . . B 2 -19.193 13.859 6.412 1 48.97 ? C5B FAD 550 A 1 HETATM 6 C C4B FAD . . . B 2 -18.344 14.888 7.109 1 46.21 ? C4B FAD 550 A 1 HETATM 7 O O4B FAD . . . B 2 -19.095 16.128 7.004 1 41.09 ? O4B FAD 550 A 1 HETATM 8 C C3B FAD . . . B 2 -17.633 14.776 8.477 1 46.59 ? C3B FAD 550 A 1 HETATM 9 O O3B FAD . . . B 2 -16.4 14.056 8.486 1 49.96 ? O3B FAD 550 A 1 HETATM 10 C C2B FAD . . . B 2 -17.59 16.187 8.855 1 46.21 ? C2B FAD 550 A 1 HETATM 11 O O2B FAD . . . B 2 -16.468 16.892 8.419 1 49.67 ? O2B FAD 550 A 1 HETATM 12 C C1B FAD . . . B 2 -18.832 16.834 8.222 1 43.96 ? C1B FAD 550 A 1 HETATM 13 N N9A FAD . . . B 2 -20.04 16.938 8.979 1 41.48 ? N9A FAD 550 A 1 HETATM 14 C C8A FAD . . . B 2 -20.576 16.176 10.05 1 37.86 ? C8A FAD 550 A 1 HETATM 15 N N7A FAD . . . B 2 -21.702 16.584 10.536 1 36.66 ? N7A FAD 550 A 1 HETATM 16 C C5A FAD . . . B 2 -21.959 17.707 9.76 1 35.35 ? C5A FAD 550 A 1 HETATM 17 C C6A FAD . . . B 2 -23.025 18.624 9.834 1 34.17 ? C6A FAD 550 A 1 HETATM 18 N N6A FAD . . . B 2 -24.005 18.547 10.744 1 38.2 ? N6A FAD 550 A 1 HETATM 19 N N1A FAD . . . B 2 -23.069 19.701 8.969 1 33.78 ? N1A FAD 550 A 1 HETATM 20 C C2A FAD . . . B 2 -22.081 19.973 8.072 1 36.57 ? C2A FAD 550 A 1 HETATM 21 N N3A FAD . . . B 2 -21.013 19.066 7.995 1 39.24 ? N3A FAD 550 A 1 HETATM 22 C C4A FAD . . . B 2 -21.009 17.938 8.874 1 38.05 ? C4A FAD 550 A 1 HETATM 23 N N1 FAD . . . B 2 -26.639 5.976 7.234 1 72.47 ? N1 FAD 550 A 1 HETATM 24 C C2 FAD . . . B 2 -27.306 5.062 8.022 1 71.02 ? C2 FAD 550 A 1 HETATM 25 O O2 FAD . . . B 2 -26.639 4.108 8.455 1 73.35 ? O2 FAD 550 A 1 HETATM 26 N N3 FAD . . . B 2 -28.636 5.428 8.191 1 70.68 ? N3 FAD 550 A 1 HETATM 27 C C4 FAD . . . B 2 -29.31 6.558 7.671 1 70.31 ? C4 FAD 550 A 1 HETATM 28 O O4 FAD . . . B 2 -30.557 6.717 7.892 1 72.22 ? O4 FAD 550 A 1 HETATM 29 C C4X FAD . . . B 2 -28.554 7.411 6.893 1 71.31 ? C4X FAD 550 A 1 HETATM 30 N N5 FAD . . . B 2 -29.165 8.526 6.232 1 70.54 ? N5 FAD 550 A 1 HETATM 31 C C5X FAD . . . B 2 -28.48 9.378 5.325 1 70.31 ? C5X FAD 550 A 1 HETATM 32 C C6 FAD . . . B 2 -29.222 10.368 4.651 1 69.91 ? C6 FAD 550 A 1 HETATM 33 C C7 FAD . . . B 2 -28.526 11.234 3.762 1 70.26 ? C7 FAD 550 A 1 HETATM 34 C C7M FAD . . . B 2 -29.395 12.28 3.064 1 70.83 ? C7M FAD 550 A 1 HETATM 35 C C8 FAD . . . B 2 -27.119 11.114 3.555 1 69.03 ? C8 FAD 550 A 1 HETATM 36 C C8M FAD . . . B 2 -26.199 11.95 2.689 1 68.01 ? C8M FAD 550 A 1 HETATM 37 C C9 FAD . . . B 2 -26.426 10.1 4.215 1 69.58 ? C9 FAD 550 A 1 HETATM 38 C C9A FAD . . . B 2 -27.035 9.155 5.082 1 69.57 ? C9A FAD 550 A 1 HETATM 39 N N10 FAD . . . B 2 -26.51 8.025 5.894 1 69.16 ? N10 FAD 550 A 1 HETATM 40 C C10 FAD . . . B 2 -27.173 7.111 6.67 1 70.81 ? C10 FAD 550 A 1 HETATM 41 C C1' FAD . . . B 2 -25.086 7.938 5.963 1 66.87 ? C1' FAD 550 A 1 HETATM 42 C C2' FAD . . . B 2 -24.374 8.667 7.062 1 64.37 ? C2' FAD 550 A 1 HETATM 43 O O2' FAD . . . B 2 -25.003 9.948 7.316 1 60.37 ? O2' FAD 550 A 1 HETATM 44 C C3' FAD . . . B 2 -22.905 8.916 6.911 1 64.07 ? C3' FAD 550 A 1 HETATM 45 O O3' FAD . . . B 2 -22.648 9.584 5.681 1 60.09 ? O3' FAD 550 A 1 HETATM 46 C C4' FAD . . . B 2 -21.914 7.781 7.108 1 64.41 ? C4' FAD 550 A 1 HETATM 47 O O4' FAD . . . B 2 -22.303 6.947 8.241 1 63.71 ? O4' FAD 550 A 1 HETATM 48 C C5' FAD . . . B 2 -20.484 8.109 7.168 1 65.76 ? C5' FAD 550 A 1 HETATM 49 O O5' FAD . . . B 2 -20.287 8.891 8.348 1 66.62 ? O5' FAD 550 A 1 HETATM 50 P P FAD . . . B 2 -19.036 9.762 8.643 1 69.52 ? P FAD 550 A 1 HETATM 51 O O1P FAD . . . B 2 -18.819 9.551 10.075 1 69.22 ? O1P FAD 550 A 1 HETATM 52 O O2P FAD . . . B 2 -17.879 9.436 7.769 1 68.35 ? O2P FAD 550 A 1 HETATM 53 O O3P FAD . . . B 2 -19.401 11.309 8.387 1 60.37 ? O3P FAD 550 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #