data_3LLM # _model_server_result.job_id etEX2I6fgEcIwJqbGC8N5Q _model_server_result.datetime_utc '2025-09-14 21:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3llm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3LLM # _exptl.entry_id 3LLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LLM _cell.length_a 113.7 _cell.length_b 113.7 _cell.length_c 141.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 33 A SER 361 1_555 A N MSE 34 A MSE 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MSE 34 A MSE 362 1_555 A N ASP 35 A ASP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LEU 40 A LEU 368 1_555 A N MSE 41 A MSE 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 41 A MSE 369 1_555 A N TYR 42 A TYR 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C ILE 158 A ILE 486 1_555 A N MSE 159 A MSE 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 159 A MSE 487 1_555 A N PHE 160 A PHE 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C LEU 213 A LEU 541 1_555 A N MSE 214 A MSE 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 214 A MSE 542 1_555 A N SER 215 A SER 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C SER 221 A SER 549 1_555 A N MSE 222 A MSE 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale10 A C MSE 222 A MSE 550 1_555 A N PHE 223 A PHE 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C SER 33 B SER 361 1_555 B N MSE 34 B MSE 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 34 B MSE 362 1_555 B N ASP 35 B ASP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C LEU 40 B LEU 368 1_555 B N MSE 41 B MSE 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 B C MSE 41 B MSE 369 1_555 B N TYR 42 B TYR 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C ILE 158 B ILE 486 1_555 B N MSE 159 B MSE 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale16 B C MSE 159 B MSE 487 1_555 B N PHE 160 B PHE 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale17 B C LEU 213 B LEU 541 1_555 B N MSE 214 B MSE 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale18 B C MSE 214 B MSE 542 1_555 B N SER 215 B SER 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 B C SER 221 B SER 549 1_555 B N MSE 222 B MSE 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale20 B C MSE 222 B MSE 550 1_555 B N PHE 223 B PHE 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 C MN MN . A MN 1 1_555 I O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 C MN MN . A MN 1 1_555 I O HOH . A HOH 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C MN MN . A MN 1 1_555 A OG1 THR 90 A THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 C MN MN . A MN 1 1_555 A OE2 GLU 184 A GLU 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 C MN MN . A MN 1 1_555 E O3B ADP . A ADP 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc6 G O1B ADP . B ADP 1 1_555 F MN MN . B MN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 F MN MN . B MN 2 1_555 J O HOH . B HOH 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc8 F MN MN . B MN 2 1_555 J O HOH . B HOH 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc9 F MN MN . B MN 2 1_555 J O HOH . B HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 F MN MN . B MN 2 1_555 B OG1 THR 90 B THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc11 F MN MN . B MN 2 1_555 B OE2 GLU 184 B GLU 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LLM _atom_sites.fract_transf_matrix[1][1] 0.008795 _atom_sites.fract_transf_matrix[1][2] 0.005078 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1 1 MN MN . D 3 CAC A 1 564 1 CAC CAC . E 4 ADP A 1 565 1 ADP ADP . F 2 MN B 1 2 2 MN MN . G 4 ADP B 1 1 1 ADP ADP . H 5 GOL B 1 564 1 GOL GOL . I 6 HOH A 1 2 2 HOH HOH . I 6 HOH A 2 4 4 HOH HOH . I 6 HOH A 3 5 5 HOH HOH . I 6 HOH A 4 8 8 HOH HOH . I 6 HOH A 5 9 9 HOH HOH . I 6 HOH A 6 10 10 HOH HOH . I 6 HOH A 7 11 11 HOH HOH . I 6 HOH A 8 13 13 HOH HOH . I 6 HOH A 9 14 14 HOH HOH . I 6 HOH A 10 15 15 HOH HOH . I 6 HOH A 11 19 19 HOH HOH . I 6 HOH A 12 20 20 HOH HOH . I 6 HOH A 13 21 21 HOH HOH . I 6 HOH A 14 24 24 HOH HOH . I 6 HOH A 15 25 25 HOH HOH . I 6 HOH A 16 27 27 HOH HOH . J 6 HOH B 1 3 3 HOH HOH . J 6 HOH B 2 6 6 HOH HOH . J 6 HOH B 3 7 7 HOH HOH . J 6 HOH B 4 12 12 HOH HOH . J 6 HOH B 5 16 16 HOH HOH . J 6 HOH B 6 17 17 HOH HOH . J 6 HOH B 7 18 18 HOH HOH . J 6 HOH B 8 22 22 HOH HOH . J 6 HOH B 9 23 23 HOH HOH . J 6 HOH B 10 26 26 HOH HOH . J 6 HOH B 11 565 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 74.965 _atom_site.Cartn_y 8.077 _atom_site.Cartn_z -1.52 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #