data_3LLT # _model_server_result.job_id gys7iaKnsmQP-m2FMqm5uA _model_server_result.datetime_utc '2025-07-31 19:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3llt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":877}' # _entry.id 3LLT # _exptl.entry_id 3LLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LLT _cell.length_a 140.081 _cell.length_b 140.081 _cell.length_c 52.418 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 3LLT _atom_sites.fract_transf_matrix[1][1] 0.007139 _atom_sites.fract_transf_matrix[1][2] 0.004122 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 3 ACT A 1 876 1 ACT ACT . D 4 ANP A 1 877 1 ANP ANP . E 5 HOH A 1 3 3 HOH HOH . E 5 HOH A 2 5 5 HOH HOH . E 5 HOH A 3 6 6 HOH HOH . E 5 HOH A 4 8 8 HOH HOH . E 5 HOH A 5 9 9 HOH HOH . E 5 HOH A 6 10 10 HOH HOH . E 5 HOH A 7 11 11 HOH HOH . E 5 HOH A 8 15 15 HOH HOH . E 5 HOH A 9 17 17 HOH HOH . E 5 HOH A 10 18 18 HOH HOH . E 5 HOH A 11 21 21 HOH HOH . E 5 HOH A 12 24 24 HOH HOH . E 5 HOH A 13 32 32 HOH HOH . E 5 HOH A 14 37 37 HOH HOH . E 5 HOH A 15 38 38 HOH HOH . E 5 HOH A 16 39 39 HOH HOH . E 5 HOH A 17 42 42 HOH HOH . E 5 HOH A 18 47 47 HOH HOH . E 5 HOH A 19 49 49 HOH HOH . E 5 HOH A 20 52 52 HOH HOH . E 5 HOH A 21 59 59 HOH HOH . E 5 HOH A 22 69 69 HOH HOH . E 5 HOH A 23 71 71 HOH HOH . E 5 HOH A 24 76 76 HOH HOH . E 5 HOH A 25 77 77 HOH HOH . E 5 HOH A 26 96 96 HOH HOH . E 5 HOH A 27 116 116 HOH HOH . E 5 HOH A 28 159 159 HOH HOH . E 5 HOH A 29 179 179 HOH HOH . E 5 HOH A 30 191 191 HOH HOH . E 5 HOH A 31 192 192 HOH HOH . E 5 HOH A 32 193 193 HOH HOH . E 5 HOH A 33 194 194 HOH HOH . E 5 HOH A 34 195 195 HOH HOH . E 5 HOH A 35 196 196 HOH HOH . E 5 HOH A 36 197 197 HOH HOH . E 5 HOH A 37 198 198 HOH HOH . E 5 HOH A 38 199 199 HOH HOH . E 5 HOH A 39 200 200 HOH HOH . E 5 HOH A 40 201 201 HOH HOH . E 5 HOH A 41 202 202 HOH HOH . E 5 HOH A 42 203 203 HOH HOH . E 5 HOH A 43 204 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 52.584 -33.764 4.567 1 27.68 ? PG ANP 877 A 1 HETATM 2 O O1G ANP . . . D 4 51.287 -34.307 5.112 1 27.73 ? O1G ANP 877 A 1 HETATM 3 O O2G ANP . . . D 4 52.542 -33.502 3.08 1 27.9 ? O2G ANP 877 A 1 HETATM 4 O O3G ANP . . . D 4 53.808 -34.532 5.005 1 27.72 ? O3G ANP 877 A 1 HETATM 5 P PB ANP . . . D 4 54.165 -31.206 5.024 1 26.52 ? PB ANP 877 A 1 HETATM 6 O O1B ANP . . . D 4 54.665 -31.522 3.636 1 26.2 ? O1B ANP 877 A 1 HETATM 7 O O2B ANP . . . D 4 53.806 -29.775 5.341 1 26.2 ? O2B ANP 877 A 1 HETATM 8 N N3B ANP . . . D 4 52.753 -32.194 5.328 1 26.92 ? N3B ANP 877 A 1 HETATM 9 P PA ANP . . . D 4 55.25 -32.215 7.488 1 26.32 ? PA ANP 877 A 1 HETATM 10 O O1A ANP . . . D 4 54.988 -31.088 8.461 1 26 ? O1A ANP 877 A 1 HETATM 11 O O2A ANP . . . D 4 54.352 -33.428 7.47 1 26.59 ? O2A ANP 877 A 1 HETATM 12 O O3A ANP . . . D 4 55.385 -31.609 5.998 1 26.54 ? O3A ANP 877 A 1 HETATM 13 O O5' ANP . . . D 4 56.746 -32.761 7.703 1 26.26 ? O5' ANP 877 A 1 HETATM 14 C C5' ANP . . . D 4 57.371 -33.46 6.628 1 26 ? C5' ANP 877 A 1 HETATM 15 C C4' ANP . . . D 4 58.387 -34.462 7.146 1 26.15 ? C4' ANP 877 A 1 HETATM 16 O O4' ANP . . . D 4 59.5 -33.771 7.717 1 26.33 ? O4' ANP 877 A 1 HETATM 17 C C3' ANP . . . D 4 57.838 -35.359 8.244 1 26.08 ? C3' ANP 877 A 1 HETATM 18 O O3' ANP . . . D 4 57.26 -36.556 7.713 1 26 ? O3' ANP 877 A 1 HETATM 19 C C2' ANP . . . D 4 59.045 -35.626 9.122 1 25.95 ? C2' ANP 877 A 1 HETATM 20 O O2' ANP . . . D 4 59.758 -36.771 8.648 1 26.25 ? O2' ANP 877 A 1 HETATM 21 C C1' ANP . . . D 4 59.913 -34.389 8.94 1 25.68 ? C1' ANP 877 A 1 HETATM 22 N N9 ANP . . . D 4 59.719 -33.443 10.07 1 25.42 ? N9 ANP 877 A 1 HETATM 23 C C8 ANP . . . D 4 58.695 -32.578 10.217 1 25.13 ? C8 ANP 877 A 1 HETATM 24 N N7 ANP . . . D 4 58.82 -31.855 11.357 1 25.23 ? N7 ANP 877 A 1 HETATM 25 C C5 ANP . . . D 4 59.949 -32.256 11.966 1 25.25 ? C5 ANP 877 A 1 HETATM 26 C C6 ANP . . . D 4 60.676 -31.903 13.212 1 25.47 ? C6 ANP 877 A 1 HETATM 27 N N6 ANP . . . D 4 60.203 -30.953 14.053 1 25.62 ? N6 ANP 877 A 1 HETATM 28 N N1 ANP . . . D 4 61.829 -32.561 13.48 1 25.67 ? N1 ANP 877 A 1 HETATM 29 C C2 ANP . . . D 4 62.312 -33.512 12.652 1 25.83 ? C2 ANP 877 A 1 HETATM 30 N N3 ANP . . . D 4 61.705 -33.88 11.505 1 25.57 ? N3 ANP 877 A 1 HETATM 31 C C4 ANP . . . D 4 60.539 -33.301 11.113 1 25.38 ? C4 ANP 877 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #