data_3LM0 # _model_server_result.job_id wrMcIp8gc74PjS6fhLLQ2Q _model_server_result.datetime_utc '2024-11-23 11:05:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3LM0 # _exptl.entry_id 3LM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-({4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-5-methylpyrimidin-2-yl}amino)phenyl]acetonitrile' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LM0 _cell.length_a 83.54 _cell.length_b 83.54 _cell.length_c 115.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N7' _chem_comp.formula_weight 345.401 _chem_comp.id EBD _chem_comp.mon_nstd_flag . _chem_comp.name '[4-({4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-5-methylpyrimidin-2-yl}amino)phenyl]acetonitrile' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EBD doub 83 n y N1 C6 EBD sing 84 n y C2 N3 EBD sing 85 n y C2 NAI EBD sing 86 n n N3 C4 EBD doub 87 n y C4 C5 EBD sing 88 n y C4 NAG EBD sing 89 n n C5 C6 EBD doub 90 n y C5 CAX EBD sing 91 n n NAG CAH EBD sing 92 n n CAH NAP EBD doub 93 n y CAH CAS EBD sing 94 n y NAI CAJ EBD sing 95 n n CAJ CAK EBD doub 96 n y CAJ CAO EBD sing 97 n y CAK CAL EBD sing 98 n y CAL CAM EBD doub 99 n y CAM CAN EBD sing 100 n y CAM CAV EBD sing 101 n n CAN CAO EBD doub 102 n y NAP NAQ EBD sing 103 n y NAQ CAR EBD sing 104 n y CAR CAS EBD doub 105 n y CAR CAT EBD sing 106 n n CAT CAU EBD sing 107 n n CAT CAW EBD sing 108 n n CAU CAW EBD sing 109 n n CAV CAY EBD sing 110 n n CAY NAZ EBD trip 111 n n C6 H6 EBD sing 112 n n NAG HNAG EBD sing 113 n n NAI HNAI EBD sing 114 n n CAK HAK EBD sing 115 n n CAL HAL EBD sing 116 n n CAN HAN EBD sing 117 n n CAO HAO EBD sing 118 n n NAQ HNAQ EBD sing 119 n n CAS HAS EBD sing 120 n n CAT HAT EBD sing 121 n n CAU HAU EBD sing 122 n n CAU HAUA EBD sing 123 n n CAV HAV EBD sing 124 n n CAV HAVA EBD sing 125 n n CAW HAW EBD sing 126 n n CAW HAWA EBD sing 127 n n CAX HAX EBD sing 128 n n CAX HAXA EBD sing 129 n n CAX HAXB EBD sing 130 n n # _atom_sites.entry_id 3LM0 _atom_sites.fract_transf_matrix[1][1] 0.01197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EBD A 1 1 1 EBD EBD . C 3 EDO A 1 330 1 EDO EDO . D 4 CL A 1 2 2 CL CL . E 5 HOH A 1 331 1 HOH HOH . E 5 HOH A 2 332 2 HOH HOH . E 5 HOH A 3 333 3 HOH HOH . E 5 HOH A 4 334 4 HOH HOH . E 5 HOH A 5 335 5 HOH HOH . E 5 HOH A 6 336 6 HOH HOH . E 5 HOH A 7 337 7 HOH HOH . E 5 HOH A 8 338 8 HOH HOH . E 5 HOH A 9 339 9 HOH HOH . E 5 HOH A 10 340 10 HOH HOH . E 5 HOH A 11 341 11 HOH HOH . E 5 HOH A 12 342 12 HOH HOH . E 5 HOH A 13 343 13 HOH HOH . E 5 HOH A 14 344 14 HOH HOH . E 5 HOH A 15 345 15 HOH HOH . E 5 HOH A 16 346 16 HOH HOH . E 5 HOH A 17 347 17 HOH HOH . E 5 HOH A 18 348 18 HOH HOH . E 5 HOH A 19 349 19 HOH HOH . E 5 HOH A 20 350 20 HOH HOH . E 5 HOH A 21 351 21 HOH HOH . E 5 HOH A 22 352 22 HOH HOH . E 5 HOH A 23 353 23 HOH HOH . E 5 HOH A 24 354 24 HOH HOH . E 5 HOH A 25 355 25 HOH HOH . E 5 HOH A 26 356 26 HOH HOH . E 5 HOH A 27 357 27 HOH HOH . E 5 HOH A 28 358 28 HOH HOH . E 5 HOH A 29 359 29 HOH HOH . E 5 HOH A 30 360 30 HOH HOH . E 5 HOH A 31 361 31 HOH HOH . E 5 HOH A 32 362 32 HOH HOH . E 5 HOH A 33 363 33 HOH HOH . E 5 HOH A 34 364 34 HOH HOH . E 5 HOH A 35 365 35 HOH HOH . E 5 HOH A 36 366 37 HOH HOH . E 5 HOH A 37 367 38 HOH HOH . E 5 HOH A 38 368 39 HOH HOH . E 5 HOH A 39 369 40 HOH HOH . E 5 HOH A 40 370 41 HOH HOH . E 5 HOH A 41 371 42 HOH HOH . E 5 HOH A 42 372 43 HOH HOH . E 5 HOH A 43 373 44 HOH HOH . E 5 HOH A 44 374 45 HOH HOH . E 5 HOH A 45 375 46 HOH HOH . E 5 HOH A 46 376 47 HOH HOH . E 5 HOH A 47 377 48 HOH HOH . E 5 HOH A 48 378 49 HOH HOH . E 5 HOH A 49 379 50 HOH HOH . E 5 HOH A 50 380 51 HOH HOH . E 5 HOH A 51 381 53 HOH HOH . E 5 HOH A 52 382 54 HOH HOH . E 5 HOH A 53 383 55 HOH HOH . E 5 HOH A 54 384 56 HOH HOH . E 5 HOH A 55 385 57 HOH HOH . E 5 HOH A 56 386 58 HOH HOH . E 5 HOH A 57 387 59 HOH HOH . E 5 HOH A 58 388 60 HOH HOH . E 5 HOH A 59 389 61 HOH HOH . E 5 HOH A 60 390 62 HOH HOH . E 5 HOH A 61 391 63 HOH HOH . E 5 HOH A 62 392 64 HOH HOH . E 5 HOH A 63 393 65 HOH HOH . E 5 HOH A 64 394 66 HOH HOH . E 5 HOH A 65 395 67 HOH HOH . E 5 HOH A 66 396 68 HOH HOH . E 5 HOH A 67 397 69 HOH HOH . E 5 HOH A 68 398 70 HOH HOH . E 5 HOH A 69 399 71 HOH HOH . E 5 HOH A 70 400 73 HOH HOH . E 5 HOH A 71 401 74 HOH HOH . E 5 HOH A 72 402 75 HOH HOH . E 5 HOH A 73 403 76 HOH HOH . E 5 HOH A 74 404 77 HOH HOH . E 5 HOH A 75 405 78 HOH HOH . E 5 HOH A 76 406 79 HOH HOH . E 5 HOH A 77 407 80 HOH HOH . E 5 HOH A 78 408 81 HOH HOH . E 5 HOH A 79 409 82 HOH HOH . E 5 HOH A 80 410 83 HOH HOH . E 5 HOH A 81 411 84 HOH HOH . E 5 HOH A 82 412 85 HOH HOH . E 5 HOH A 83 413 86 HOH HOH . E 5 HOH A 84 414 87 HOH HOH . E 5 HOH A 85 415 88 HOH HOH . E 5 HOH A 86 416 89 HOH HOH . E 5 HOH A 87 417 90 HOH HOH . E 5 HOH A 88 418 91 HOH HOH . E 5 HOH A 89 419 92 HOH HOH . E 5 HOH A 90 420 93 HOH HOH . E 5 HOH A 91 421 94 HOH HOH . E 5 HOH A 92 422 95 HOH HOH . E 5 HOH A 93 423 96 HOH HOH . E 5 HOH A 94 424 97 HOH HOH . E 5 HOH A 95 425 98 HOH HOH . E 5 HOH A 96 426 99 HOH HOH . E 5 HOH A 97 427 100 HOH HOH . E 5 HOH A 98 428 102 HOH HOH . E 5 HOH A 99 429 103 HOH HOH . E 5 HOH A 100 430 105 HOH HOH . E 5 HOH A 101 431 106 HOH HOH . E 5 HOH A 102 432 107 HOH HOH . E 5 HOH A 103 433 108 HOH HOH . E 5 HOH A 104 434 109 HOH HOH . E 5 HOH A 105 435 110 HOH HOH . E 5 HOH A 106 436 113 HOH HOH . E 5 HOH A 107 437 114 HOH HOH . E 5 HOH A 108 438 115 HOH HOH . E 5 HOH A 109 439 116 HOH HOH . E 5 HOH A 110 440 117 HOH HOH . E 5 HOH A 111 441 118 HOH HOH . E 5 HOH A 112 442 119 HOH HOH . E 5 HOH A 113 443 120 HOH HOH . E 5 HOH A 114 444 122 HOH HOH . E 5 HOH A 115 445 123 HOH HOH . E 5 HOH A 116 446 124 HOH HOH . E 5 HOH A 117 447 126 HOH HOH . E 5 HOH A 118 448 127 HOH HOH . E 5 HOH A 119 449 128 HOH HOH . E 5 HOH A 120 450 129 HOH HOH . E 5 HOH A 121 451 130 HOH HOH . E 5 HOH A 122 452 132 HOH HOH . E 5 HOH A 123 453 133 HOH HOH . E 5 HOH A 124 454 134 HOH HOH . E 5 HOH A 125 455 135 HOH HOH . E 5 HOH A 126 456 136 HOH HOH . E 5 HOH A 127 457 137 HOH HOH . E 5 HOH A 128 458 138 HOH HOH . E 5 HOH A 129 459 141 HOH HOH . E 5 HOH A 130 460 142 HOH HOH . E 5 HOH A 131 461 143 HOH HOH . E 5 HOH A 132 462 144 HOH HOH . E 5 HOH A 133 463 145 HOH HOH . E 5 HOH A 134 464 146 HOH HOH . E 5 HOH A 135 465 147 HOH HOH . E 5 HOH A 136 466 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EBD . . . B 2 25.25 39.642 3.125 1 36.37 ? N1 EBD 1 A 1 HETATM 2 C C2 EBD . . . B 2 23.933 39.35 2.998 1 36.36 ? C2 EBD 1 A 1 HETATM 3 N N3 EBD . . . B 2 23.045 40.057 3.729 1 38.51 ? N3 EBD 1 A 1 HETATM 4 C C4 EBD . . . B 2 23.434 41.032 4.609 1 37.64 ? C4 EBD 1 A 1 HETATM 5 C C5 EBD . . . B 2 24.822 41.311 4.73 1 38.01 ? C5 EBD 1 A 1 HETATM 6 C C6 EBD . . . B 2 25.719 40.587 3.935 1 37.13 ? C6 EBD 1 A 1 HETATM 7 N NAG EBD . . . B 2 22.503 41.703 5.304 1 36.25 ? NAG EBD 1 A 1 HETATM 8 C CAH EBD . . . B 2 21.143 41.507 5.196 1 37.78 ? CAH EBD 1 A 1 HETATM 9 N NAI EBD . . . B 2 23.589 38.356 2.124 1 38.48 ? NAI EBD 1 A 1 HETATM 10 C CAJ EBD . . . B 2 22.377 38.011 1.646 1 39.27 ? CAJ EBD 1 A 1 HETATM 11 C CAK EBD . . . B 2 22.047 36.647 1.598 1 41.58 ? CAK EBD 1 A 1 HETATM 12 C CAL EBD . . . B 2 20.82 36.17 1.095 1 40.18 ? CAL EBD 1 A 1 HETATM 13 C CAM EBD . . . B 2 19.874 37.102 0.638 1 43.78 ? CAM EBD 1 A 1 HETATM 14 C CAN EBD . . . B 2 20.219 38.466 0.657 1 41.83 ? CAN EBD 1 A 1 HETATM 15 C CAO EBD . . . B 2 21.449 38.926 1.146 1 39.9 ? CAO EBD 1 A 1 HETATM 16 N NAP EBD . . . B 2 20.324 41.968 6.144 1 35.48 ? NAP EBD 1 A 1 HETATM 17 N NAQ EBD . . . B 2 19.126 41.703 5.914 1 34.85 ? NAQ EBD 1 A 1 HETATM 18 C CAR EBD . . . B 2 19.082 41.042 4.755 1 36 ? CAR EBD 1 A 1 HETATM 19 C CAS EBD . . . B 2 20.358 40.91 4.252 1 36.88 ? CAS EBD 1 A 1 HETATM 20 C CAT EBD . . . B 2 17.739 40.564 4.153 1 32.88 ? CAT EBD 1 A 1 HETATM 21 C CAU EBD . . . B 2 17.62 39.138 3.586 1 31.61 ? CAU EBD 1 A 1 HETATM 22 C CAV EBD . . . B 2 18.516 36.613 0.054 1 44.78 ? CAV EBD 1 A 1 HETATM 23 C CAW EBD . . . B 2 17.803 40.297 2.635 1 32.93 ? CAW EBD 1 A 1 HETATM 24 C CAX EBD . . . B 2 25.431 42.377 5.642 1 38.41 ? CAX EBD 1 A 1 HETATM 25 C CAY EBD . . . B 2 17.352 37.385 0.49 1 50.7 ? CAY EBD 1 A 1 HETATM 26 N NAZ EBD . . . B 2 16.44 37.966 0.877 1 53.55 ? NAZ EBD 1 A 1 # _model_server_stats.io_time_ms 400 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 912 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 26 #