data_3LM5 # _model_server_result.job_id QU9aaUL7NecoU46jXaqBdA _model_server_result.datetime_utc '2024-11-24 15:43:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3LM5 # _exptl.entry_id 3LM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LM5 _cell.length_a 83.38 _cell.length_b 83.38 _cell.length_c 115.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 277 n y C1 C6 QUE sing 278 n y C1 H1 QUE sing 279 n n C2 C3 QUE sing 280 n y C2 O30 QUE sing 281 n n C3 C4 QUE doub 282 n y C3 C9 QUE sing 283 n y C4 C5 QUE sing 284 n y C4 O12 QUE sing 285 n y C5 C6 QUE doub 286 n y C5 H5 QUE sing 287 n n C6 O29 QUE sing 288 n n C9 C10 QUE sing 289 n y C9 O13 QUE doub 290 n n C10 C11 QUE doub 291 n y C10 O27 QUE sing 292 n n C11 C14 QUE sing 293 n y C11 O12 QUE sing 294 n y C14 C15 QUE doub 295 n y C14 C19 QUE sing 296 n y C15 C16 QUE sing 297 n y C15 H15 QUE sing 298 n n C16 C17 QUE doub 299 n y C16 H16 QUE sing 300 n n C17 C18 QUE sing 301 n y C17 O24 QUE sing 302 n n C18 C19 QUE doub 303 n y C18 O23 QUE sing 304 n n C19 H19 QUE sing 305 n n O23 HO3 QUE sing 306 n n O24 HO4 QUE sing 307 n n O27 HO7 QUE sing 308 n n O29 HO9 QUE sing 309 n n O30 HO0 QUE sing 310 n n # _atom_sites.entry_id 3LM5 _atom_sites.fract_transf_matrix[1][1] 0.011993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QUE A 1 1 1 QUE QUE . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 330 1 HOH HOH . C 3 HOH A 3 331 3 HOH HOH . C 3 HOH A 4 332 4 HOH HOH . C 3 HOH A 5 333 6 HOH HOH . C 3 HOH A 6 334 7 HOH HOH . C 3 HOH A 7 335 8 HOH HOH . C 3 HOH A 8 336 9 HOH HOH . C 3 HOH A 9 337 10 HOH HOH . C 3 HOH A 10 338 11 HOH HOH . C 3 HOH A 11 339 12 HOH HOH . C 3 HOH A 12 340 13 HOH HOH . C 3 HOH A 13 341 14 HOH HOH . C 3 HOH A 14 342 15 HOH HOH . C 3 HOH A 15 343 16 HOH HOH . C 3 HOH A 16 344 17 HOH HOH . C 3 HOH A 17 345 18 HOH HOH . C 3 HOH A 18 346 19 HOH HOH . C 3 HOH A 19 347 20 HOH HOH . C 3 HOH A 20 348 21 HOH HOH . C 3 HOH A 21 349 22 HOH HOH . C 3 HOH A 22 350 23 HOH HOH . C 3 HOH A 23 351 25 HOH HOH . C 3 HOH A 24 352 26 HOH HOH . C 3 HOH A 25 353 27 HOH HOH . C 3 HOH A 26 354 28 HOH HOH . C 3 HOH A 27 355 29 HOH HOH . C 3 HOH A 28 356 30 HOH HOH . C 3 HOH A 29 357 31 HOH HOH . C 3 HOH A 30 358 32 HOH HOH . C 3 HOH A 31 359 33 HOH HOH . C 3 HOH A 32 360 34 HOH HOH . C 3 HOH A 33 361 35 HOH HOH . C 3 HOH A 34 362 36 HOH HOH . C 3 HOH A 35 363 37 HOH HOH . C 3 HOH A 36 364 39 HOH HOH . C 3 HOH A 37 365 40 HOH HOH . C 3 HOH A 38 366 41 HOH HOH . C 3 HOH A 39 367 42 HOH HOH . C 3 HOH A 40 368 43 HOH HOH . C 3 HOH A 41 369 44 HOH HOH . C 3 HOH A 42 370 45 HOH HOH . C 3 HOH A 43 371 46 HOH HOH . C 3 HOH A 44 372 47 HOH HOH . C 3 HOH A 45 373 48 HOH HOH . C 3 HOH A 46 374 49 HOH HOH . C 3 HOH A 47 375 50 HOH HOH . C 3 HOH A 48 376 51 HOH HOH . C 3 HOH A 49 377 52 HOH HOH . C 3 HOH A 50 378 53 HOH HOH . C 3 HOH A 51 379 54 HOH HOH . C 3 HOH A 52 380 55 HOH HOH . C 3 HOH A 53 381 56 HOH HOH . C 3 HOH A 54 382 57 HOH HOH . C 3 HOH A 55 383 58 HOH HOH . C 3 HOH A 56 384 59 HOH HOH . C 3 HOH A 57 385 60 HOH HOH . C 3 HOH A 58 386 61 HOH HOH . C 3 HOH A 59 387 62 HOH HOH . C 3 HOH A 60 388 63 HOH HOH . C 3 HOH A 61 389 65 HOH HOH . C 3 HOH A 62 390 66 HOH HOH . C 3 HOH A 63 391 67 HOH HOH . C 3 HOH A 64 392 68 HOH HOH . C 3 HOH A 65 393 69 HOH HOH . C 3 HOH A 66 394 70 HOH HOH . C 3 HOH A 67 395 71 HOH HOH . C 3 HOH A 68 396 72 HOH HOH . C 3 HOH A 69 397 73 HOH HOH . C 3 HOH A 70 398 74 HOH HOH . C 3 HOH A 71 399 75 HOH HOH . C 3 HOH A 72 400 76 HOH HOH . C 3 HOH A 73 401 78 HOH HOH . C 3 HOH A 74 402 79 HOH HOH . C 3 HOH A 75 403 80 HOH HOH . C 3 HOH A 76 404 81 HOH HOH . C 3 HOH A 77 405 82 HOH HOH . C 3 HOH A 78 406 83 HOH HOH . C 3 HOH A 79 407 84 HOH HOH . C 3 HOH A 80 408 85 HOH HOH . C 3 HOH A 81 409 86 HOH HOH . C 3 HOH A 82 410 87 HOH HOH . C 3 HOH A 83 411 88 HOH HOH . C 3 HOH A 84 412 89 HOH HOH . C 3 HOH A 85 413 90 HOH HOH . C 3 HOH A 86 414 91 HOH HOH . C 3 HOH A 87 415 92 HOH HOH . C 3 HOH A 88 416 93 HOH HOH . C 3 HOH A 89 417 94 HOH HOH . C 3 HOH A 90 418 96 HOH HOH . C 3 HOH A 91 419 97 HOH HOH . C 3 HOH A 92 420 99 HOH HOH . C 3 HOH A 93 421 100 HOH HOH . C 3 HOH A 94 422 101 HOH HOH . C 3 HOH A 95 423 102 HOH HOH . C 3 HOH A 96 424 103 HOH HOH . C 3 HOH A 97 425 104 HOH HOH . C 3 HOH A 98 426 105 HOH HOH . C 3 HOH A 99 427 106 HOH HOH . C 3 HOH A 100 428 107 HOH HOH . C 3 HOH A 101 429 108 HOH HOH . C 3 HOH A 102 430 109 HOH HOH . C 3 HOH A 103 431 110 HOH HOH . C 3 HOH A 104 432 111 HOH HOH . C 3 HOH A 105 433 112 HOH HOH . C 3 HOH A 106 434 113 HOH HOH . C 3 HOH A 107 435 114 HOH HOH . C 3 HOH A 108 436 115 HOH HOH . C 3 HOH A 109 437 116 HOH HOH . C 3 HOH A 110 438 117 HOH HOH . C 3 HOH A 111 439 118 HOH HOH . C 3 HOH A 112 440 119 HOH HOH . C 3 HOH A 113 441 120 HOH HOH . C 3 HOH A 114 442 121 HOH HOH . C 3 HOH A 115 443 122 HOH HOH . C 3 HOH A 116 444 123 HOH HOH . C 3 HOH A 117 445 124 HOH HOH . C 3 HOH A 118 446 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . B 2 21.551 0.22 4.704 1 31.28 ? C1 QUE 1 A 1 HETATM 2 C C2 QUE . . . B 2 21.588 0.948 3.528 1 32.54 ? C2 QUE 1 A 1 HETATM 3 C C3 QUE . . . B 2 22.73 1.658 3.122 1 25.28 ? C3 QUE 1 A 1 HETATM 4 C C4 QUE . . . B 2 23.863 1.637 3.921 1 27.43 ? C4 QUE 1 A 1 HETATM 5 C C5 QUE . . . B 2 23.837 0.914 5.106 1 25.5 ? C5 QUE 1 A 1 HETATM 6 C C6 QUE . . . B 2 22.694 0.199 5.484 1 31.3 ? C6 QUE 1 A 1 HETATM 7 C C9 QUE . . . B 2 22.758 2.394 1.928 1 37.81 ? C9 QUE 1 A 1 HETATM 8 C C10 QUE . . . B 2 23.92 3.073 1.544 1 28.65 ? C10 QUE 1 A 1 HETATM 9 C C11 QUE . . . B 2 25.049 3.029 2.407 1 28.2 ? C11 QUE 1 A 1 HETATM 10 C C14 QUE . . . B 2 26.267 3.687 2.143 1 34.96 ? C14 QUE 1 A 1 HETATM 11 C C15 QUE . . . B 2 27.111 4.046 3.188 1 52.88 ? C15 QUE 1 A 1 HETATM 12 C C16 QUE . . . B 2 28.326 4.7 2.968 1 26.54 ? C16 QUE 1 A 1 HETATM 13 C C17 QUE . . . B 2 28.742 5.017 1.704 1 23.01 ? C17 QUE 1 A 1 HETATM 14 C C18 QUE . . . B 2 27.916 4.641 0.646 1 39.67 ? C18 QUE 1 A 1 HETATM 15 C C19 QUE . . . B 2 26.706 3.992 0.866 1 39.9 ? C19 QUE 1 A 1 HETATM 16 O O12 QUE . . . B 2 25.003 2.325 3.58 1 34.32 ? O12 QUE 1 A 1 HETATM 17 O O13 QUE . . . B 2 21.766 2.389 1.189 1 49.2 ? O13 QUE 1 A 1 HETATM 18 O O23 QUE . . . B 2 28.273 4.906 -0.624 1 35.16 ? O23 QUE 1 A 1 HETATM 19 O O24 QUE . . . B 2 29.937 5.692 1.504 1 32.78 ? O24 QUE 1 A 1 HETATM 20 O O27 QUE . . . B 2 23.928 3.746 0.33 1 26.88 ? O27 QUE 1 A 1 HETATM 21 O O29 QUE . . . B 2 22.689 -0.511 6.643 1 35.75 ? O29 QUE 1 A 1 HETATM 22 O O30 QUE . . . B 2 20.475 0.964 2.799 1 36.56 ? O30 QUE 1 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #