data_3LMG # _model_server_result.job_id 2RLeDFZYfttGBu4HBU2vRA _model_server_result.datetime_utc '2025-03-13 19:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 3LMG # _exptl.entry_id 3LMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.11 _cell.angle_gamma 90 _cell.entry_id 3LMG _cell.length_a 193.348 _cell.length_b 47.981 _cell.length_c 82.224 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 202 1_555 D O2B ANP . A ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 C MG MG . A MG 202 1_555 D O2A ANP . A ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 C MG MG . A MG 202 1_555 D O1G ANP . A ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 C MG MG . A MG 202 1_555 A OD1 ASN 163 A ASN 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc5 C MG MG . A MG 202 1_555 A OD2 ASP 176 A ASP 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 E MG MG . B MG 202 1_555 F O2B ANP . B ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc7 E MG MG . B MG 202 1_555 F O2A ANP . B ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 E MG MG . B MG 202 1_555 F O1G ANP . B ANP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc9 E MG MG . B MG 202 1_555 B OD1 ASN 163 B ASN 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc10 E MG MG . B MG 202 1_555 B OD2 ASP 176 B ASP 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3LMG _atom_sites.fract_transf_matrix[1][1] 0.005172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001691 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 202 202 MG MG . D 3 ANP A 1 301 301 ANP ANP . E 2 MG B 1 202 202 MG MG . F 3 ANP B 1 301 301 ANP ANP . G 4 HOH A 1 1011 1011 HOH HOH . G 4 HOH A 2 1012 1012 HOH HOH . H 4 HOH B 1 1013 1013 HOH HOH . H 4 HOH B 2 1014 1014 HOH HOH . H 4 HOH B 3 1015 1015 HOH HOH . H 4 HOH B 4 1016 1016 HOH HOH . H 4 HOH B 5 1017 1017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 13.934 -23.869 26.172 1 39.29 ? PG ANP 301 B 1 HETATM 2 O O1G ANP . . . F 3 13.978 -22.371 26.001 1 38.17 ? O1G ANP 301 B 1 HETATM 3 O O2G ANP . . . F 3 13.601 -24.616 24.902 1 39.31 ? O2G ANP 301 B 1 HETATM 4 O O3G ANP . . . F 3 15.125 -24.435 26.911 1 39.7 ? O3G ANP 301 B 1 HETATM 5 P PB ANP . . . F 3 12.206 -22.988 28.412 1 38.97 ? PB ANP 301 B 1 HETATM 6 O O1B ANP . . . F 3 10.887 -23.371 29.036 1 39.14 ? O1B ANP 301 B 1 HETATM 7 O O2B ANP . . . F 3 12.338 -21.618 27.792 1 38.44 ? O2B ANP 301 B 1 HETATM 8 N N3B ANP . . . F 3 12.577 -24.193 27.214 1 38.82 ? N3B ANP 301 B 1 HETATM 9 P PA ANP . . . F 3 14.501 -22.168 29.932 1 38.69 ? PA ANP 301 B 1 HETATM 10 O O1A ANP . . . F 3 15.514 -22.988 30.693 1 39.02 ? O1A ANP 301 B 1 HETATM 11 O O2A ANP . . . F 3 14.934 -21.419 28.699 1 38.98 ? O2A ANP 301 B 1 HETATM 12 O O3A ANP . . . F 3 13.313 -23.191 29.566 1 39.3 ? O3A ANP 301 B 1 HETATM 13 O O5' ANP . . . F 3 13.783 -21.132 30.933 1 38.71 ? O5' ANP 301 B 1 HETATM 14 C C5' ANP . . . F 3 13.063 -21.625 32.061 1 39.41 ? C5' ANP 301 B 1 HETATM 15 C C4' ANP . . . F 3 12.054 -20.601 32.578 1 39.88 ? C4' ANP 301 B 1 HETATM 16 O O4' ANP . . . F 3 12.667 -19.325 32.783 1 39.67 ? O4' ANP 301 B 1 HETATM 17 C C3' ANP . . . F 3 10.887 -20.394 31.623 1 40.03 ? C3' ANP 301 B 1 HETATM 18 O O3' ANP . . . F 3 9.677 -20.568 32.367 1 40.14 ? O3' ANP 301 B 1 HETATM 19 C C2' ANP . . . F 3 11.017 -18.955 31.161 1 40.07 ? C2' ANP 301 B 1 HETATM 20 O O2' ANP . . . F 3 9.746 -18.324 30.975 1 40.51 ? O2' ANP 301 B 1 HETATM 21 C C1' ANP . . . F 3 11.804 -18.304 32.286 1 39.52 ? C1' ANP 301 B 1 HETATM 22 N N9 ANP . . . F 3 12.603 -17.157 31.805 1 38.89 ? N9 ANP 301 B 1 HETATM 23 C C8 ANP . . . F 3 13.613 -17.207 30.918 1 38.91 ? C8 ANP 301 B 1 HETATM 24 N N7 ANP . . . F 3 14.128 -15.971 30.699 1 39 ? N7 ANP 301 B 1 HETATM 25 C C5 ANP . . . F 3 13.437 -15.11 31.465 1 38.73 ? C5 ANP 301 B 1 HETATM 26 C C6 ANP . . . F 3 13.467 -13.652 31.717 1 38.83 ? C6 ANP 301 B 1 HETATM 27 N N6 ANP . . . F 3 14.369 -12.869 31.08 1 39.12 ? N6 ANP 301 B 1 HETATM 28 N N1 ANP . . . F 3 12.57 -13.138 32.594 1 38.76 ? N1 ANP 301 B 1 HETATM 29 C C2 ANP . . . F 3 11.672 -13.923 33.229 1 38.82 ? C2 ANP 301 B 1 HETATM 30 N N3 ANP . . . F 3 11.591 -15.257 33.048 1 38.61 ? N3 ANP 301 B 1 HETATM 31 C C4 ANP . . . F 3 12.432 -15.895 32.195 1 38.57 ? C4 ANP 301 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #