data_3LMJ # _model_server_result.job_id DPWCe2AcFZGRKTHD1jq82Q _model_server_result.datetime_utc '2024-10-17 22:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":232}' # _entry.id 3LMJ # _exptl.entry_id 3LMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LMJ _cell.length_a 98.103 _cell.length_b 98.103 _cell.length_c 220.324 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 152 H CYS 152 1_555 A SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LMJ _atom_sites.fract_transf_matrix[1][1] 0.010193 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD H 1 232 1 MPD MPD . D 3 MPD L 1 218 1 MPD MPD . E 4 HOH H 1 233 5 HOH HOH . E 4 HOH H 2 234 6 HOH HOH . E 4 HOH H 3 235 7 HOH HOH . E 4 HOH H 4 236 8 HOH HOH . E 4 HOH H 5 237 9 HOH HOH . E 4 HOH H 6 238 11 HOH HOH . E 4 HOH H 7 239 13 HOH HOH . E 4 HOH H 8 240 16 HOH HOH . E 4 HOH H 9 241 17 HOH HOH . E 4 HOH H 10 242 19 HOH HOH . E 4 HOH H 11 243 22 HOH HOH . E 4 HOH H 12 244 23 HOH HOH . E 4 HOH H 13 245 24 HOH HOH . E 4 HOH H 14 246 29 HOH HOH . E 4 HOH H 15 247 30 HOH HOH . E 4 HOH H 16 248 31 HOH HOH . E 4 HOH H 17 249 33 HOH HOH . E 4 HOH H 18 250 34 HOH HOH . E 4 HOH H 19 251 36 HOH HOH . E 4 HOH H 20 252 38 HOH HOH . E 4 HOH H 21 253 40 HOH HOH . E 4 HOH H 22 254 41 HOH HOH . E 4 HOH H 23 255 42 HOH HOH . E 4 HOH H 24 256 43 HOH HOH . E 4 HOH H 25 257 44 HOH HOH . E 4 HOH H 26 258 45 HOH HOH . E 4 HOH H 27 259 50 HOH HOH . E 4 HOH H 28 260 51 HOH HOH . E 4 HOH H 29 261 54 HOH HOH . E 4 HOH H 30 262 56 HOH HOH . E 4 HOH H 31 263 62 HOH HOH . E 4 HOH H 32 264 63 HOH HOH . E 4 HOH H 33 265 68 HOH HOH . E 4 HOH H 34 266 69 HOH HOH . E 4 HOH H 35 267 70 HOH HOH . E 4 HOH H 36 268 71 HOH HOH . E 4 HOH H 37 269 77 HOH HOH . E 4 HOH H 38 270 81 HOH HOH . E 4 HOH H 39 271 82 HOH HOH . E 4 HOH H 40 272 83 HOH HOH . E 4 HOH H 41 273 84 HOH HOH . E 4 HOH H 42 274 85 HOH HOH . E 4 HOH H 43 275 86 HOH HOH . E 4 HOH H 44 276 88 HOH HOH . E 4 HOH H 45 277 90 HOH HOH . E 4 HOH H 46 278 91 HOH HOH . E 4 HOH H 47 279 92 HOH HOH . E 4 HOH H 48 280 94 HOH HOH . E 4 HOH H 49 281 95 HOH HOH . E 4 HOH H 50 282 99 HOH HOH . E 4 HOH H 51 283 102 HOH HOH . E 4 HOH H 52 284 103 HOH HOH . E 4 HOH H 53 285 111 HOH HOH . E 4 HOH H 54 286 112 HOH HOH . E 4 HOH H 55 287 113 HOH HOH . E 4 HOH H 56 288 115 HOH HOH . E 4 HOH H 57 289 116 HOH HOH . E 4 HOH H 58 290 117 HOH HOH . E 4 HOH H 59 291 122 HOH HOH . E 4 HOH H 60 292 123 HOH HOH . E 4 HOH H 61 293 125 HOH HOH . E 4 HOH H 62 294 126 HOH HOH . E 4 HOH H 63 295 128 HOH HOH . E 4 HOH H 64 296 129 HOH HOH . E 4 HOH H 65 297 130 HOH HOH . E 4 HOH H 66 298 131 HOH HOH . E 4 HOH H 67 299 134 HOH HOH . E 4 HOH H 68 300 138 HOH HOH . E 4 HOH H 69 301 140 HOH HOH . E 4 HOH H 70 302 141 HOH HOH . E 4 HOH H 71 303 143 HOH HOH . E 4 HOH H 72 304 144 HOH HOH . E 4 HOH H 73 305 145 HOH HOH . E 4 HOH H 74 306 146 HOH HOH . E 4 HOH H 75 307 148 HOH HOH . E 4 HOH H 76 308 150 HOH HOH . E 4 HOH H 77 309 151 HOH HOH . E 4 HOH H 78 310 153 HOH HOH . E 4 HOH H 79 311 156 HOH HOH . E 4 HOH H 80 312 157 HOH HOH . E 4 HOH H 81 313 158 HOH HOH . E 4 HOH H 82 314 162 HOH HOH . E 4 HOH H 83 315 164 HOH HOH . E 4 HOH H 84 316 167 HOH HOH . E 4 HOH H 85 317 168 HOH HOH . E 4 HOH H 86 318 170 HOH HOH . E 4 HOH H 87 319 171 HOH HOH . E 4 HOH H 88 320 173 HOH HOH . E 4 HOH H 89 321 175 HOH HOH . E 4 HOH H 90 322 176 HOH HOH . E 4 HOH H 91 323 177 HOH HOH . E 4 HOH H 92 324 179 HOH HOH . E 4 HOH H 93 325 180 HOH HOH . E 4 HOH H 94 326 181 HOH HOH . F 4 HOH L 1 219 1 HOH HOH . F 4 HOH L 2 220 2 HOH HOH . F 4 HOH L 3 221 3 HOH HOH . F 4 HOH L 4 222 4 HOH HOH . F 4 HOH L 5 223 10 HOH HOH . F 4 HOH L 6 224 12 HOH HOH . F 4 HOH L 7 225 14 HOH HOH . F 4 HOH L 8 226 15 HOH HOH . F 4 HOH L 9 227 18 HOH HOH . F 4 HOH L 10 228 20 HOH HOH . F 4 HOH L 11 229 21 HOH HOH . F 4 HOH L 12 230 25 HOH HOH . F 4 HOH L 13 231 26 HOH HOH . F 4 HOH L 14 232 27 HOH HOH . F 4 HOH L 15 233 28 HOH HOH . F 4 HOH L 16 234 32 HOH HOH . F 4 HOH L 17 235 35 HOH HOH . F 4 HOH L 18 236 37 HOH HOH . F 4 HOH L 19 237 39 HOH HOH . F 4 HOH L 20 238 46 HOH HOH . F 4 HOH L 21 239 47 HOH HOH . F 4 HOH L 22 240 48 HOH HOH . F 4 HOH L 23 241 49 HOH HOH . F 4 HOH L 24 242 52 HOH HOH . F 4 HOH L 25 243 53 HOH HOH . F 4 HOH L 26 244 55 HOH HOH . F 4 HOH L 27 245 57 HOH HOH . F 4 HOH L 28 246 58 HOH HOH . F 4 HOH L 29 247 59 HOH HOH . F 4 HOH L 30 248 60 HOH HOH . F 4 HOH L 31 249 61 HOH HOH . F 4 HOH L 32 250 64 HOH HOH . F 4 HOH L 33 251 65 HOH HOH . F 4 HOH L 34 252 66 HOH HOH . F 4 HOH L 35 253 67 HOH HOH . F 4 HOH L 36 254 72 HOH HOH . F 4 HOH L 37 255 73 HOH HOH . F 4 HOH L 38 256 74 HOH HOH . F 4 HOH L 39 257 75 HOH HOH . F 4 HOH L 40 258 76 HOH HOH . F 4 HOH L 41 259 78 HOH HOH . F 4 HOH L 42 260 79 HOH HOH . F 4 HOH L 43 261 80 HOH HOH . F 4 HOH L 44 262 87 HOH HOH . F 4 HOH L 45 263 89 HOH HOH . F 4 HOH L 46 264 93 HOH HOH . F 4 HOH L 47 265 96 HOH HOH . F 4 HOH L 48 266 97 HOH HOH . F 4 HOH L 49 267 98 HOH HOH . F 4 HOH L 50 268 100 HOH HOH . F 4 HOH L 51 269 101 HOH HOH . F 4 HOH L 52 270 104 HOH HOH . F 4 HOH L 53 271 105 HOH HOH . F 4 HOH L 54 272 106 HOH HOH . F 4 HOH L 55 273 107 HOH HOH . F 4 HOH L 56 274 108 HOH HOH . F 4 HOH L 57 275 109 HOH HOH . F 4 HOH L 58 276 110 HOH HOH . F 4 HOH L 59 277 114 HOH HOH . F 4 HOH L 60 278 118 HOH HOH . F 4 HOH L 61 279 119 HOH HOH . F 4 HOH L 62 280 120 HOH HOH . F 4 HOH L 63 281 121 HOH HOH . F 4 HOH L 64 282 124 HOH HOH . F 4 HOH L 65 283 127 HOH HOH . F 4 HOH L 66 284 132 HOH HOH . F 4 HOH L 67 285 133 HOH HOH . F 4 HOH L 68 286 135 HOH HOH . F 4 HOH L 69 287 136 HOH HOH . F 4 HOH L 70 288 137 HOH HOH . F 4 HOH L 71 289 139 HOH HOH . F 4 HOH L 72 290 142 HOH HOH . F 4 HOH L 73 291 147 HOH HOH . F 4 HOH L 74 292 149 HOH HOH . F 4 HOH L 75 293 152 HOH HOH . F 4 HOH L 76 294 154 HOH HOH . F 4 HOH L 77 295 155 HOH HOH . F 4 HOH L 78 296 159 HOH HOH . F 4 HOH L 79 297 160 HOH HOH . F 4 HOH L 80 298 161 HOH HOH . F 4 HOH L 81 299 163 HOH HOH . F 4 HOH L 82 300 165 HOH HOH . F 4 HOH L 83 301 166 HOH HOH . F 4 HOH L 84 302 169 HOH HOH . F 4 HOH L 85 303 172 HOH HOH . F 4 HOH L 86 304 174 HOH HOH . F 4 HOH L 87 305 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 12.383 -34.905 1.66 1 53.62 ? C1 MPD 232 H 1 HETATM 2 C C2 MPD . . . C 3 11.231 -35.061 0.682 1 53.67 ? C2 MPD 232 H 1 HETATM 3 O O2 MPD . . . C 3 10.164 -35.935 1.133 1 47.17 ? O2 MPD 232 H 1 HETATM 4 C CM MPD . . . C 3 10.643 -33.666 0.459 1 53.47 ? CM MPD 232 H 1 HETATM 5 C C3 MPD . . . C 3 11.823 -35.781 -0.517 1 55.79 ? C3 MPD 232 H 1 HETATM 6 C C4 MPD . . . C 3 12.765 -36.901 -0.01 1 62.47 ? C4 MPD 232 H 1 HETATM 7 O O4 MPD . . . C 3 12.475 -37.394 1.308 1 60.82 ? O4 MPD 232 H 1 HETATM 8 C C5 MPD . . . C 3 14.23 -36.445 -0.024 1 64.17 ? C5 MPD 232 H 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #