data_3LMJ
#
_model_server_result.job_id            kj71rphPukcJ8lABfmZxDg 
_model_server_result.datetime_utc      '2024-12-01 07:10:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":232}' 
#
_entry.id    3LMJ 
#
_exptl.entry_id    3LMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LMJ 
_cell.length_a            98.103 
_cell.length_b            98.103 
_cell.length_c            220.324 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 152 H CYS 152 1_555 A SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     3LMJ 
_atom_sites.fract_transf_matrix[1][1]    0.010193 
_atom_sites.fract_transf_matrix[1][2]    0.005885 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004539 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MPD H 1 232 1 MPD MPD . 
D 3 MPD L 1 218 1 MPD MPD . 
E 4 HOH H 1 233 5 HOH HOH . 
E 4 HOH H 2 234 6 HOH HOH . 
E 4 HOH H 3 235 7 HOH HOH . 
E 4 HOH H 4 236 8 HOH HOH . 
E 4 HOH H 5 237 9 HOH HOH . 
E 4 HOH H 6 238 11 HOH HOH . 
E 4 HOH H 7 239 13 HOH HOH . 
E 4 HOH H 8 240 16 HOH HOH . 
E 4 HOH H 9 241 17 HOH HOH . 
E 4 HOH H 10 242 19 HOH HOH . 
E 4 HOH H 11 243 22 HOH HOH . 
E 4 HOH H 12 244 23 HOH HOH . 
E 4 HOH H 13 245 24 HOH HOH . 
E 4 HOH H 14 246 29 HOH HOH . 
E 4 HOH H 15 247 30 HOH HOH . 
E 4 HOH H 16 248 31 HOH HOH . 
E 4 HOH H 17 249 33 HOH HOH . 
E 4 HOH H 18 250 34 HOH HOH . 
E 4 HOH H 19 251 36 HOH HOH . 
E 4 HOH H 20 252 38 HOH HOH . 
E 4 HOH H 21 253 40 HOH HOH . 
E 4 HOH H 22 254 41 HOH HOH . 
E 4 HOH H 23 255 42 HOH HOH . 
E 4 HOH H 24 256 43 HOH HOH . 
E 4 HOH H 25 257 44 HOH HOH . 
E 4 HOH H 26 258 45 HOH HOH . 
E 4 HOH H 27 259 50 HOH HOH . 
E 4 HOH H 28 260 51 HOH HOH . 
E 4 HOH H 29 261 54 HOH HOH . 
E 4 HOH H 30 262 56 HOH HOH . 
E 4 HOH H 31 263 62 HOH HOH . 
E 4 HOH H 32 264 63 HOH HOH . 
E 4 HOH H 33 265 68 HOH HOH . 
E 4 HOH H 34 266 69 HOH HOH . 
E 4 HOH H 35 267 70 HOH HOH . 
E 4 HOH H 36 268 71 HOH HOH . 
E 4 HOH H 37 269 77 HOH HOH . 
E 4 HOH H 38 270 81 HOH HOH . 
E 4 HOH H 39 271 82 HOH HOH . 
E 4 HOH H 40 272 83 HOH HOH . 
E 4 HOH H 41 273 84 HOH HOH . 
E 4 HOH H 42 274 85 HOH HOH . 
E 4 HOH H 43 275 86 HOH HOH . 
E 4 HOH H 44 276 88 HOH HOH . 
E 4 HOH H 45 277 90 HOH HOH . 
E 4 HOH H 46 278 91 HOH HOH . 
E 4 HOH H 47 279 92 HOH HOH . 
E 4 HOH H 48 280 94 HOH HOH . 
E 4 HOH H 49 281 95 HOH HOH . 
E 4 HOH H 50 282 99 HOH HOH . 
E 4 HOH H 51 283 102 HOH HOH . 
E 4 HOH H 52 284 103 HOH HOH . 
E 4 HOH H 53 285 111 HOH HOH . 
E 4 HOH H 54 286 112 HOH HOH . 
E 4 HOH H 55 287 113 HOH HOH . 
E 4 HOH H 56 288 115 HOH HOH . 
E 4 HOH H 57 289 116 HOH HOH . 
E 4 HOH H 58 290 117 HOH HOH . 
E 4 HOH H 59 291 122 HOH HOH . 
E 4 HOH H 60 292 123 HOH HOH . 
E 4 HOH H 61 293 125 HOH HOH . 
E 4 HOH H 62 294 126 HOH HOH . 
E 4 HOH H 63 295 128 HOH HOH . 
E 4 HOH H 64 296 129 HOH HOH . 
E 4 HOH H 65 297 130 HOH HOH . 
E 4 HOH H 66 298 131 HOH HOH . 
E 4 HOH H 67 299 134 HOH HOH . 
E 4 HOH H 68 300 138 HOH HOH . 
E 4 HOH H 69 301 140 HOH HOH . 
E 4 HOH H 70 302 141 HOH HOH . 
E 4 HOH H 71 303 143 HOH HOH . 
E 4 HOH H 72 304 144 HOH HOH . 
E 4 HOH H 73 305 145 HOH HOH . 
E 4 HOH H 74 306 146 HOH HOH . 
E 4 HOH H 75 307 148 HOH HOH . 
E 4 HOH H 76 308 150 HOH HOH . 
E 4 HOH H 77 309 151 HOH HOH . 
E 4 HOH H 78 310 153 HOH HOH . 
E 4 HOH H 79 311 156 HOH HOH . 
E 4 HOH H 80 312 157 HOH HOH . 
E 4 HOH H 81 313 158 HOH HOH . 
E 4 HOH H 82 314 162 HOH HOH . 
E 4 HOH H 83 315 164 HOH HOH . 
E 4 HOH H 84 316 167 HOH HOH . 
E 4 HOH H 85 317 168 HOH HOH . 
E 4 HOH H 86 318 170 HOH HOH . 
E 4 HOH H 87 319 171 HOH HOH . 
E 4 HOH H 88 320 173 HOH HOH . 
E 4 HOH H 89 321 175 HOH HOH . 
E 4 HOH H 90 322 176 HOH HOH . 
E 4 HOH H 91 323 177 HOH HOH . 
E 4 HOH H 92 324 179 HOH HOH . 
E 4 HOH H 93 325 180 HOH HOH . 
E 4 HOH H 94 326 181 HOH HOH . 
F 4 HOH L 1 219 1 HOH HOH . 
F 4 HOH L 2 220 2 HOH HOH . 
F 4 HOH L 3 221 3 HOH HOH . 
F 4 HOH L 4 222 4 HOH HOH . 
F 4 HOH L 5 223 10 HOH HOH . 
F 4 HOH L 6 224 12 HOH HOH . 
F 4 HOH L 7 225 14 HOH HOH . 
F 4 HOH L 8 226 15 HOH HOH . 
F 4 HOH L 9 227 18 HOH HOH . 
F 4 HOH L 10 228 20 HOH HOH . 
F 4 HOH L 11 229 21 HOH HOH . 
F 4 HOH L 12 230 25 HOH HOH . 
F 4 HOH L 13 231 26 HOH HOH . 
F 4 HOH L 14 232 27 HOH HOH . 
F 4 HOH L 15 233 28 HOH HOH . 
F 4 HOH L 16 234 32 HOH HOH . 
F 4 HOH L 17 235 35 HOH HOH . 
F 4 HOH L 18 236 37 HOH HOH . 
F 4 HOH L 19 237 39 HOH HOH . 
F 4 HOH L 20 238 46 HOH HOH . 
F 4 HOH L 21 239 47 HOH HOH . 
F 4 HOH L 22 240 48 HOH HOH . 
F 4 HOH L 23 241 49 HOH HOH . 
F 4 HOH L 24 242 52 HOH HOH . 
F 4 HOH L 25 243 53 HOH HOH . 
F 4 HOH L 26 244 55 HOH HOH . 
F 4 HOH L 27 245 57 HOH HOH . 
F 4 HOH L 28 246 58 HOH HOH . 
F 4 HOH L 29 247 59 HOH HOH . 
F 4 HOH L 30 248 60 HOH HOH . 
F 4 HOH L 31 249 61 HOH HOH . 
F 4 HOH L 32 250 64 HOH HOH . 
F 4 HOH L 33 251 65 HOH HOH . 
F 4 HOH L 34 252 66 HOH HOH . 
F 4 HOH L 35 253 67 HOH HOH . 
F 4 HOH L 36 254 72 HOH HOH . 
F 4 HOH L 37 255 73 HOH HOH . 
F 4 HOH L 38 256 74 HOH HOH . 
F 4 HOH L 39 257 75 HOH HOH . 
F 4 HOH L 40 258 76 HOH HOH . 
F 4 HOH L 41 259 78 HOH HOH . 
F 4 HOH L 42 260 79 HOH HOH . 
F 4 HOH L 43 261 80 HOH HOH . 
F 4 HOH L 44 262 87 HOH HOH . 
F 4 HOH L 45 263 89 HOH HOH . 
F 4 HOH L 46 264 93 HOH HOH . 
F 4 HOH L 47 265 96 HOH HOH . 
F 4 HOH L 48 266 97 HOH HOH . 
F 4 HOH L 49 267 98 HOH HOH . 
F 4 HOH L 50 268 100 HOH HOH . 
F 4 HOH L 51 269 101 HOH HOH . 
F 4 HOH L 52 270 104 HOH HOH . 
F 4 HOH L 53 271 105 HOH HOH . 
F 4 HOH L 54 272 106 HOH HOH . 
F 4 HOH L 55 273 107 HOH HOH . 
F 4 HOH L 56 274 108 HOH HOH . 
F 4 HOH L 57 275 109 HOH HOH . 
F 4 HOH L 58 276 110 HOH HOH . 
F 4 HOH L 59 277 114 HOH HOH . 
F 4 HOH L 60 278 118 HOH HOH . 
F 4 HOH L 61 279 119 HOH HOH . 
F 4 HOH L 62 280 120 HOH HOH . 
F 4 HOH L 63 281 121 HOH HOH . 
F 4 HOH L 64 282 124 HOH HOH . 
F 4 HOH L 65 283 127 HOH HOH . 
F 4 HOH L 66 284 132 HOH HOH . 
F 4 HOH L 67 285 133 HOH HOH . 
F 4 HOH L 68 286 135 HOH HOH . 
F 4 HOH L 69 287 136 HOH HOH . 
F 4 HOH L 70 288 137 HOH HOH . 
F 4 HOH L 71 289 139 HOH HOH . 
F 4 HOH L 72 290 142 HOH HOH . 
F 4 HOH L 73 291 147 HOH HOH . 
F 4 HOH L 74 292 149 HOH HOH . 
F 4 HOH L 75 293 152 HOH HOH . 
F 4 HOH L 76 294 154 HOH HOH . 
F 4 HOH L 77 295 155 HOH HOH . 
F 4 HOH L 78 296 159 HOH HOH . 
F 4 HOH L 79 297 160 HOH HOH . 
F 4 HOH L 80 298 161 HOH HOH . 
F 4 HOH L 81 299 163 HOH HOH . 
F 4 HOH L 82 300 165 HOH HOH . 
F 4 HOH L 83 301 166 HOH HOH . 
F 4 HOH L 84 302 169 HOH HOH . 
F 4 HOH L 85 303 172 HOH HOH . 
F 4 HOH L 86 304 174 HOH HOH . 
F 4 HOH L 87 305 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 12.383 -34.905 1.66 1 53.62 ? C1 MPD 232 H 1 
HETATM 2 C C2 MPD . . . C 3 11.231 -35.061 0.682 1 53.67 ? C2 MPD 232 H 1 
HETATM 3 O O2 MPD . . . C 3 10.164 -35.935 1.133 1 47.17 ? O2 MPD 232 H 1 
HETATM 4 C CM MPD . . . C 3 10.643 -33.666 0.459 1 53.47 ? CM MPD 232 H 1 
HETATM 5 C C3 MPD . . . C 3 11.823 -35.781 -0.517 1 55.79 ? C3 MPD 232 H 1 
HETATM 6 C C4 MPD . . . C 3 12.765 -36.901 -0.01 1 62.47 ? C4 MPD 232 H 1 
HETATM 7 O O4 MPD . . . C 3 12.475 -37.394 1.308 1 60.82 ? O4 MPD 232 H 1 
HETATM 8 C C5 MPD . . . C 3 14.23 -36.445 -0.024 1 64.17 ? C5 MPD 232 H 1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#