data_3LMP # _model_server_result.job_id mB2Eb-NG6nILOA3KN4qKuw _model_server_result.datetime_utc '2025-01-02 16:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":23}' # _entry.id 3LMP # _exptl.entry_id 3LMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.485 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-N-(1-naphthylmethyl)-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.37 _cell.angle_gamma 90 _cell.entry_id 3LMP _cell.length_a 38.767 _cell.length_b 53.975 _cell.length_c 66.531 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H23 N O7' _chem_comp.formula_weight 485.485 _chem_comp.id CEK _chem_comp.mon_nstd_flag . _chem_comp.name (9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-N-(1-naphthylmethyl)-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-N-(naphthalen-1-ylmethyl)-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-carbox amide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CEK sing 70 n n C2 O3 CEK doub 71 n n C2 C4 CEK sing 72 n n C4 C5 CEK sing 73 n n C4 C9 CEK doub 74 n n C5 C6 CEK sing 75 n n C5 O18 CEK doub 76 n n C6 C7 CEK sing 77 n n C6 C12 CEK sing 78 n n C6 C17 CEK sing 79 n n C7 C8 CEK doub 80 n n C7 O10 CEK sing 81 n n C8 C9 CEK sing 82 n n C9 O19 CEK sing 83 n n O10 C11 CEK sing 84 n n C11 C12 CEK doub 85 n y C11 C13 CEK sing 86 n y C12 C16 CEK sing 87 n y C13 C14 CEK doub 88 n y C13 C23 CEK sing 89 n n C14 C15 CEK sing 90 n y C14 O21 CEK sing 91 n n C15 C16 CEK doub 92 n y C16 O20 CEK sing 93 n n O21 C22 CEK sing 94 n n C23 O24 CEK doub 95 n n C23 N25 CEK sing 96 n n N25 C26 CEK sing 97 n n C26 C27 CEK sing 98 n n C27 C28 CEK doub 99 n y C27 C32 CEK sing 100 n y C28 C29 CEK sing 101 n y C28 C36 CEK sing 102 n y C29 C30 CEK doub 103 n y C29 C33 CEK sing 104 n y C30 C31 CEK sing 105 n y C31 C32 CEK doub 106 n y C33 C34 CEK doub 107 n y C34 C35 CEK sing 108 n y C35 C36 CEK doub 109 n y C1 H1 CEK sing 110 n n C1 H1A CEK sing 111 n n C1 H1B CEK sing 112 n n C15 H15 CEK sing 113 n n C17 H17 CEK sing 114 n n C17 H17A CEK sing 115 n n C17 H17B CEK sing 116 n n O19 HO19 CEK sing 117 n n O20 HO20 CEK sing 118 n n C22 H22 CEK sing 119 n n C22 H22A CEK sing 120 n n C22 H22B CEK sing 121 n n N25 HN25 CEK sing 122 n n C26 H26 CEK sing 123 n n C26 H26A CEK sing 124 n n C30 H30 CEK sing 125 n n C31 H31 CEK sing 126 n n C32 H32 CEK sing 127 n n C33 H33 CEK sing 128 n n C34 H34 CEK sing 129 n n C35 H35 CEK sing 130 n n C36 H36 CEK sing 131 n n C8 H8 CEK sing 132 n n # _atom_sites.entry_id 3LMP _atom_sites.fract_transf_matrix[1][1] 0.025795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CEK A 1 23 23 CEK CER . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 19 19 HOH HOH . D 4 HOH A 20 20 20 HOH HOH . D 4 HOH A 21 21 21 HOH HOH . D 4 HOH A 22 22 22 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 38 38 HOH HOH . D 4 HOH A 38 39 39 HOH HOH . D 4 HOH A 39 40 40 HOH HOH . D 4 HOH A 40 41 41 HOH HOH . D 4 HOH A 41 42 42 HOH HOH . D 4 HOH A 42 43 43 HOH HOH . D 4 HOH A 43 44 44 HOH HOH . D 4 HOH A 44 45 45 HOH HOH . D 4 HOH A 45 46 46 HOH HOH . D 4 HOH A 46 47 47 HOH HOH . D 4 HOH A 47 48 48 HOH HOH . D 4 HOH A 48 49 49 HOH HOH . D 4 HOH A 49 50 50 HOH HOH . D 4 HOH A 50 51 51 HOH HOH . D 4 HOH A 51 52 52 HOH HOH . D 4 HOH A 52 53 53 HOH HOH . D 4 HOH A 53 54 54 HOH HOH . D 4 HOH A 54 55 55 HOH HOH . D 4 HOH A 55 56 56 HOH HOH . D 4 HOH A 56 57 57 HOH HOH . D 4 HOH A 57 58 58 HOH HOH . D 4 HOH A 58 59 59 HOH HOH . D 4 HOH A 59 60 60 HOH HOH . D 4 HOH A 60 61 61 HOH HOH . D 4 HOH A 61 62 62 HOH HOH . D 4 HOH A 62 63 63 HOH HOH . D 4 HOH A 63 64 64 HOH HOH . D 4 HOH A 64 65 65 HOH HOH . D 4 HOH A 65 66 66 HOH HOH . D 4 HOH A 66 67 67 HOH HOH . D 4 HOH A 67 68 68 HOH HOH . D 4 HOH A 68 69 69 HOH HOH . D 4 HOH A 69 70 70 HOH HOH . D 4 HOH A 70 71 71 HOH HOH . D 4 HOH A 71 72 72 HOH HOH . D 4 HOH A 72 73 73 HOH HOH . D 4 HOH A 73 74 74 HOH HOH . D 4 HOH A 74 75 75 HOH HOH . D 4 HOH A 75 76 76 HOH HOH . D 4 HOH A 76 77 77 HOH HOH . D 4 HOH A 77 78 78 HOH HOH . D 4 HOH A 78 79 79 HOH HOH . D 4 HOH A 79 80 80 HOH HOH . D 4 HOH A 80 81 81 HOH HOH . D 4 HOH A 81 82 82 HOH HOH . D 4 HOH A 82 83 83 HOH HOH . D 4 HOH A 83 84 84 HOH HOH . D 4 HOH A 84 85 85 HOH HOH . D 4 HOH A 85 86 86 HOH HOH . D 4 HOH A 86 87 87 HOH HOH . D 4 HOH A 87 88 88 HOH HOH . D 4 HOH A 88 89 89 HOH HOH . D 4 HOH A 89 90 90 HOH HOH . D 4 HOH A 90 91 91 HOH HOH . D 4 HOH A 91 92 92 HOH HOH . D 4 HOH A 92 93 93 HOH HOH . D 4 HOH A 93 94 94 HOH HOH . D 4 HOH A 94 95 95 HOH HOH . D 4 HOH A 95 96 96 HOH HOH . D 4 HOH A 96 97 97 HOH HOH . D 4 HOH A 97 98 98 HOH HOH . D 4 HOH A 98 99 99 HOH HOH . D 4 HOH A 99 100 100 HOH HOH . D 4 HOH A 100 101 101 HOH HOH . D 4 HOH A 101 102 102 HOH HOH . D 4 HOH A 102 103 103 HOH HOH . D 4 HOH A 103 104 104 HOH HOH . D 4 HOH A 104 105 105 HOH HOH . D 4 HOH A 105 106 106 HOH HOH . D 4 HOH A 106 107 107 HOH HOH . D 4 HOH A 107 108 108 HOH HOH . D 4 HOH A 108 109 109 HOH HOH . D 4 HOH A 109 110 110 HOH HOH . D 4 HOH A 110 111 111 HOH HOH . D 4 HOH A 111 112 112 HOH HOH . D 4 HOH A 112 113 113 HOH HOH . D 4 HOH A 113 114 114 HOH HOH . D 4 HOH A 114 115 115 HOH HOH . D 4 HOH A 115 116 116 HOH HOH . D 4 HOH A 116 117 117 HOH HOH . D 4 HOH A 117 118 118 HOH HOH . D 4 HOH A 118 119 119 HOH HOH . D 4 HOH A 119 120 120 HOH HOH . D 4 HOH A 120 121 121 HOH HOH . D 4 HOH A 121 122 122 HOH HOH . D 4 HOH A 122 123 123 HOH HOH . D 4 HOH A 123 124 124 HOH HOH . D 4 HOH A 124 125 125 HOH HOH . D 4 HOH A 125 126 126 HOH HOH . D 4 HOH A 126 127 127 HOH HOH . D 4 HOH A 127 128 128 HOH HOH . D 4 HOH A 128 129 129 HOH HOH . D 4 HOH A 129 130 130 HOH HOH . D 4 HOH A 130 131 131 HOH HOH . D 4 HOH A 131 132 132 HOH HOH . D 4 HOH A 132 133 133 HOH HOH . D 4 HOH A 133 134 134 HOH HOH . D 4 HOH A 134 135 135 HOH HOH . D 4 HOH A 135 136 136 HOH HOH . D 4 HOH A 136 137 137 HOH HOH . D 4 HOH A 137 139 139 HOH HOH . D 4 HOH A 138 140 140 HOH HOH . D 4 HOH A 139 141 141 HOH HOH . D 4 HOH A 140 142 142 HOH HOH . D 4 HOH A 141 143 143 HOH HOH . D 4 HOH A 142 144 144 HOH HOH . D 4 HOH A 143 145 145 HOH HOH . D 4 HOH A 144 146 146 HOH HOH . D 4 HOH A 145 147 147 HOH HOH . D 4 HOH A 146 148 148 HOH HOH . D 4 HOH A 147 149 149 HOH HOH . D 4 HOH A 148 150 150 HOH HOH . D 4 HOH A 149 151 151 HOH HOH . D 4 HOH A 150 153 153 HOH HOH . D 4 HOH A 151 154 154 HOH HOH . D 4 HOH A 152 155 155 HOH HOH . D 4 HOH A 153 156 156 HOH HOH . D 4 HOH A 154 157 157 HOH HOH . D 4 HOH A 155 158 158 HOH HOH . D 4 HOH A 156 159 159 HOH HOH . D 4 HOH A 157 160 160 HOH HOH . D 4 HOH A 158 161 161 HOH HOH . D 4 HOH A 159 162 162 HOH HOH . D 4 HOH A 160 163 163 HOH HOH . D 4 HOH A 161 164 164 HOH HOH . D 4 HOH A 162 165 165 HOH HOH . D 4 HOH A 163 166 166 HOH HOH . D 4 HOH A 164 167 167 HOH HOH . D 4 HOH A 165 168 168 HOH HOH . D 4 HOH A 166 169 169 HOH HOH . D 4 HOH A 167 170 170 HOH HOH . D 4 HOH A 168 171 171 HOH HOH . D 4 HOH A 169 172 172 HOH HOH . D 4 HOH A 170 173 173 HOH HOH . D 4 HOH A 171 174 174 HOH HOH . D 4 HOH A 172 176 176 HOH HOH . D 4 HOH A 173 177 177 HOH HOH . D 4 HOH A 174 178 178 HOH HOH . D 4 HOH A 175 179 179 HOH HOH . D 4 HOH A 176 180 180 HOH HOH . D 4 HOH A 177 181 181 HOH HOH . D 4 HOH A 178 182 182 HOH HOH . D 4 HOH A 179 183 183 HOH HOH . D 4 HOH A 180 184 184 HOH HOH . D 4 HOH A 181 185 185 HOH HOH . D 4 HOH A 182 186 186 HOH HOH . D 4 HOH A 183 187 187 HOH HOH . D 4 HOH A 184 188 188 HOH HOH . D 4 HOH A 185 189 189 HOH HOH . D 4 HOH A 186 190 190 HOH HOH . D 4 HOH A 187 191 191 HOH HOH . D 4 HOH A 188 478 23 HOH HOH . E 4 HOH C 1 138 138 HOH HOH . E 4 HOH C 2 152 152 HOH HOH . E 4 HOH C 3 175 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CEK . . . C 3 15.238 51.299 66.907 1 28.39 ? C1 CEK 23 A 1 HETATM 2 C C2 CEK . . . C 3 16.116 51.253 65.656 1 27.04 ? C2 CEK 23 A 1 HETATM 3 O O3 CEK . . . C 3 17.239 51.754 65.656 1 30.59 ? O3 CEK 23 A 1 HETATM 4 C C4 CEK . . . C 3 15.558 50.593 64.403 1 25.35 ? C4 CEK 23 A 1 HETATM 5 C C5 CEK . . . C 3 14.658 49.332 64.575 1 23 ? C5 CEK 23 A 1 HETATM 6 C C6 CEK . . . C 3 14.651 48.369 63.326 1 22 ? C6 CEK 23 A 1 HETATM 7 C C7 CEK . . . C 3 14.747 49.204 62.037 1 21.89 ? C7 CEK 23 A 1 HETATM 8 C C8 CEK . . . C 3 15.297 50.452 62.003 1 23.03 ? C8 CEK 23 A 1 HETATM 9 C C9 CEK . . . C 3 15.801 51.04 63.13 1 25.67 ? C9 CEK 23 A 1 HETATM 10 O O10 CEK . . . C 3 14.222 48.582 60.934 1 20.37 ? O10 CEK 23 A 1 HETATM 11 C C11 CEK . . . C 3 13.208 47.818 61.507 1 19.61 ? C11 CEK 23 A 1 HETATM 12 C C12 CEK . . . C 3 13.376 47.647 62.883 1 19.57 ? C12 CEK 23 A 1 HETATM 13 C C13 CEK . . . C 3 12.103 47.247 60.836 1 18.6 ? C13 CEK 23 A 1 HETATM 14 C C14 CEK . . . C 3 11.165 46.495 61.595 1 18.06 ? C14 CEK 23 A 1 HETATM 15 C C15 CEK . . . C 3 11.358 46.338 62.986 1 18.79 ? C15 CEK 23 A 1 HETATM 16 C C16 CEK . . . C 3 12.455 46.91 63.624 1 19.85 ? C16 CEK 23 A 1 HETATM 17 C C17 CEK . . . C 3 15.842 47.384 63.434 1 19.63 ? C17 CEK 23 A 1 HETATM 18 O O18 CEK . . . C 3 14.011 49.093 65.593 1 22.43 ? O18 CEK 23 A 1 HETATM 19 O O19 CEK . . . C 3 16.589 52.144 62.943 1 28.07 ? O19 CEK 23 A 1 HETATM 20 O O20 CEK . . . C 3 12.607 46.734 64.974 1 21.68 ? O20 CEK 23 A 1 HETATM 21 O O21 CEK . . . C 3 10.077 45.937 60.914 1 17.93 ? O21 CEK 23 A 1 HETATM 22 C C22 CEK . . . C 3 9.119 45.012 61.489 1 18.76 ? C22 CEK 23 A 1 HETATM 23 C C23 CEK . . . C 3 11.992 47.48 59.328 1 17.57 ? C23 CEK 23 A 1 HETATM 24 O O24 CEK . . . C 3 12.997 47.711 58.658 1 16.73 ? O24 CEK 23 A 1 HETATM 25 N N25 CEK . . . C 3 10.829 47.412 58.652 1 17.83 ? N25 CEK 23 A 1 HETATM 26 C C26 CEK . . . C 3 10.468 48.218 57.468 1 16.92 ? C26 CEK 23 A 1 HETATM 27 C C27 CEK . . . C 3 8.952 48.529 57.397 1 16.29 ? C27 CEK 23 A 1 HETATM 28 C C28 CEK . . . C 3 7.917 47.562 57.55 1 16.49 ? C28 CEK 23 A 1 HETATM 29 C C29 CEK . . . C 3 6.54 47.991 57.464 1 17.12 ? C29 CEK 23 A 1 HETATM 30 C C30 CEK . . . C 3 6.249 49.335 57.234 1 16.6 ? C30 CEK 23 A 1 HETATM 31 C C31 CEK . . . C 3 7.276 50.265 57.087 1 15.23 ? C31 CEK 23 A 1 HETATM 32 C C32 CEK . . . C 3 8.608 49.869 57.168 1 15.98 ? C32 CEK 23 A 1 HETATM 33 C C33 CEK . . . C 3 5.507 47.051 57.613 1 17 ? C33 CEK 23 A 1 HETATM 34 C C34 CEK . . . C 3 5.809 45.711 57.843 1 16.5 ? C34 CEK 23 A 1 HETATM 35 C C35 CEK . . . C 3 7.133 45.288 57.927 1 17.92 ? C35 CEK 23 A 1 HETATM 36 C C36 CEK . . . C 3 8.176 46.201 57.784 1 17.18 ? C36 CEK 23 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #