data_3LN9 # _model_server_result.job_id T5QyaWixSSuNyDFgBBA_hg _model_server_result.datetime_utc '2024-11-22 05:35:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ln9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":138}' # _entry.id 3LN9 # _exptl.entry_id 3LN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LN9 _cell.length_a 84.124 _cell.length_b 84.124 _cell.length_c 84.124 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 100 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.977 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 3LN9 _atom_sites.fract_transf_matrix[1][1] 0.011887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 136 136 FLC FLC . C 3 GOL A 1 137 137 GOL GOL . D 3 GOL A 1 138 138 GOL GOL . E 3 GOL A 1 139 139 GOL GOL . F 4 SO4 A 1 140 140 SO4 SO4 . G 5 HOH A 1 141 141 HOH HOH . G 5 HOH A 2 142 142 HOH HOH . G 5 HOH A 3 143 143 HOH HOH . G 5 HOH A 4 144 144 HOH HOH . G 5 HOH A 5 145 145 HOH HOH . G 5 HOH A 6 146 146 HOH HOH . G 5 HOH A 7 147 147 HOH HOH . G 5 HOH A 8 148 148 HOH HOH . G 5 HOH A 9 149 149 HOH HOH . G 5 HOH A 10 150 150 HOH HOH . G 5 HOH A 11 151 151 HOH HOH . G 5 HOH A 12 152 152 HOH HOH . G 5 HOH A 13 153 153 HOH HOH . G 5 HOH A 14 154 154 HOH HOH . G 5 HOH A 15 155 155 HOH HOH . G 5 HOH A 16 156 156 HOH HOH . G 5 HOH A 17 157 157 HOH HOH . G 5 HOH A 18 158 158 HOH HOH . G 5 HOH A 19 159 159 HOH HOH . G 5 HOH A 20 160 160 HOH HOH . G 5 HOH A 21 161 161 HOH HOH . G 5 HOH A 22 162 162 HOH HOH . G 5 HOH A 23 163 163 HOH HOH . G 5 HOH A 24 164 164 HOH HOH . G 5 HOH A 25 165 165 HOH HOH . G 5 HOH A 26 166 166 HOH HOH . G 5 HOH A 27 167 167 HOH HOH . G 5 HOH A 28 168 168 HOH HOH . G 5 HOH A 29 169 169 HOH HOH . G 5 HOH A 30 170 170 HOH HOH . G 5 HOH A 31 171 171 HOH HOH . G 5 HOH A 32 172 172 HOH HOH . G 5 HOH A 33 173 173 HOH HOH . G 5 HOH A 34 174 174 HOH HOH . G 5 HOH A 35 175 175 HOH HOH . G 5 HOH A 36 176 176 HOH HOH . G 5 HOH A 37 177 177 HOH HOH . G 5 HOH A 38 178 178 HOH HOH . G 5 HOH A 39 179 179 HOH HOH . G 5 HOH A 40 180 180 HOH HOH . G 5 HOH A 41 181 181 HOH HOH . G 5 HOH A 42 182 182 HOH HOH . G 5 HOH A 43 183 183 HOH HOH . G 5 HOH A 44 184 184 HOH HOH . G 5 HOH A 45 185 185 HOH HOH . G 5 HOH A 46 186 186 HOH HOH . G 5 HOH A 47 187 187 HOH HOH . G 5 HOH A 48 188 188 HOH HOH . G 5 HOH A 49 189 189 HOH HOH . G 5 HOH A 50 190 190 HOH HOH . G 5 HOH A 51 191 191 HOH HOH . G 5 HOH A 52 192 192 HOH HOH . G 5 HOH A 53 193 193 HOH HOH . G 5 HOH A 54 194 194 HOH HOH . G 5 HOH A 55 195 195 HOH HOH . G 5 HOH A 56 196 196 HOH HOH . G 5 HOH A 57 197 197 HOH HOH . G 5 HOH A 58 198 198 HOH HOH . G 5 HOH A 59 199 199 HOH HOH . G 5 HOH A 60 200 200 HOH HOH . G 5 HOH A 61 201 201 HOH HOH . G 5 HOH A 62 202 202 HOH HOH . G 5 HOH A 63 203 203 HOH HOH . G 5 HOH A 64 204 204 HOH HOH . G 5 HOH A 65 205 205 HOH HOH . G 5 HOH A 66 206 206 HOH HOH . G 5 HOH A 67 207 207 HOH HOH . G 5 HOH A 68 208 208 HOH HOH . G 5 HOH A 69 209 209 HOH HOH . G 5 HOH A 70 210 210 HOH HOH . G 5 HOH A 71 211 211 HOH HOH . G 5 HOH A 72 212 212 HOH HOH . G 5 HOH A 73 213 213 HOH HOH . G 5 HOH A 74 214 214 HOH HOH . G 5 HOH A 75 215 215 HOH HOH . G 5 HOH A 76 216 216 HOH HOH . G 5 HOH A 77 217 217 HOH HOH . G 5 HOH A 78 218 218 HOH HOH . G 5 HOH A 79 219 219 HOH HOH . G 5 HOH A 80 220 220 HOH HOH . G 5 HOH A 81 221 221 HOH HOH . G 5 HOH A 82 222 222 HOH HOH . G 5 HOH A 83 223 223 HOH HOH . G 5 HOH A 84 224 224 HOH HOH . G 5 HOH A 85 225 225 HOH HOH . G 5 HOH A 86 226 226 HOH HOH . G 5 HOH A 87 227 227 HOH HOH . G 5 HOH A 88 228 228 HOH HOH . G 5 HOH A 89 229 229 HOH HOH . G 5 HOH A 90 230 230 HOH HOH . G 5 HOH A 91 231 231 HOH HOH . G 5 HOH A 92 232 232 HOH HOH . G 5 HOH A 93 233 233 HOH HOH . G 5 HOH A 94 234 234 HOH HOH . G 5 HOH A 95 235 235 HOH HOH . G 5 HOH A 96 236 236 HOH HOH . G 5 HOH A 97 237 237 HOH HOH . G 5 HOH A 98 238 238 HOH HOH . G 5 HOH A 99 239 239 HOH HOH . G 5 HOH A 100 240 240 HOH HOH . G 5 HOH A 101 241 241 HOH HOH . G 5 HOH A 102 242 242 HOH HOH . G 5 HOH A 103 243 243 HOH HOH . G 5 HOH A 104 244 244 HOH HOH . G 5 HOH A 105 245 245 HOH HOH . G 5 HOH A 106 246 246 HOH HOH . G 5 HOH A 107 247 247 HOH HOH . G 5 HOH A 108 248 248 HOH HOH . G 5 HOH A 109 249 249 HOH HOH . G 5 HOH A 110 250 250 HOH HOH . G 5 HOH A 111 251 251 HOH HOH . G 5 HOH A 112 252 252 HOH HOH . G 5 HOH A 113 253 253 HOH HOH . G 5 HOH A 114 254 254 HOH HOH . G 5 HOH A 115 255 255 HOH HOH . G 5 HOH A 116 256 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 2.876 -19.697 7.118 1 10.57 ? C1 GOL 138 A 1 HETATM 2 O O1 GOL . . . D 3 4.176 -19.669 7.66 1 11.43 ? O1 GOL 138 A 1 HETATM 3 C C2 GOL . . . D 3 1.992 -20.358 8.17 1 12.02 ? C2 GOL 138 A 1 HETATM 4 O O2 GOL . . . D 3 1.327 -19.273 8.771 1 12.28 ? O2 GOL 138 A 1 HETATM 5 C C3 GOL . . . D 3 1.005 -21.39 7.557 1 10.24 ? C3 GOL 138 A 1 HETATM 6 O O3 GOL . . . D 3 -0.375 -21.082 7.75 1 9.04 ? O3 GOL 138 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #