data_3LNB # _model_server_result.job_id c_l5BQikrTj6ZpgqmVKpyg _model_server_result.datetime_utc '2024-11-05 01:17:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3LNB # _exptl.entry_id 3LNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LNB _cell.length_a 53.99 _cell.length_b 53.99 _cell.length_c 172.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3LNB _atom_sites.fract_transf_matrix[1][1] 0.018522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 1001 1001 COA COA . C 3 FMT A 1 1002 1002 FMT FMT . D 3 FMT A 1 1003 1003 FMT FMT . E 4 HOH A 1 281 281 HOH HOH . E 4 HOH A 2 282 282 HOH HOH . E 4 HOH A 3 283 283 HOH HOH . E 4 HOH A 4 284 284 HOH HOH . E 4 HOH A 5 285 285 HOH HOH . E 4 HOH A 6 286 286 HOH HOH . E 4 HOH A 7 287 287 HOH HOH . E 4 HOH A 8 288 288 HOH HOH . E 4 HOH A 9 289 289 HOH HOH . E 4 HOH A 10 290 290 HOH HOH . E 4 HOH A 11 291 291 HOH HOH . E 4 HOH A 12 292 292 HOH HOH . E 4 HOH A 13 293 293 HOH HOH . E 4 HOH A 14 294 294 HOH HOH . E 4 HOH A 15 295 295 HOH HOH . E 4 HOH A 16 296 296 HOH HOH . E 4 HOH A 17 297 297 HOH HOH . E 4 HOH A 18 298 298 HOH HOH . E 4 HOH A 19 299 299 HOH HOH . E 4 HOH A 20 300 300 HOH HOH . E 4 HOH A 21 301 301 HOH HOH . E 4 HOH A 22 302 302 HOH HOH . E 4 HOH A 23 303 303 HOH HOH . E 4 HOH A 24 304 304 HOH HOH . E 4 HOH A 25 305 305 HOH HOH . E 4 HOH A 26 306 306 HOH HOH . E 4 HOH A 27 307 307 HOH HOH . E 4 HOH A 28 308 308 HOH HOH . E 4 HOH A 29 309 309 HOH HOH . E 4 HOH A 30 310 310 HOH HOH . E 4 HOH A 31 311 311 HOH HOH . E 4 HOH A 32 312 312 HOH HOH . E 4 HOH A 33 313 313 HOH HOH . E 4 HOH A 34 314 314 HOH HOH . E 4 HOH A 35 315 315 HOH HOH . E 4 HOH A 36 316 316 HOH HOH . E 4 HOH A 37 317 317 HOH HOH . E 4 HOH A 38 318 318 HOH HOH . E 4 HOH A 39 319 319 HOH HOH . E 4 HOH A 40 320 320 HOH HOH . E 4 HOH A 41 321 321 HOH HOH . E 4 HOH A 42 322 322 HOH HOH . E 4 HOH A 43 323 323 HOH HOH . E 4 HOH A 44 324 324 HOH HOH . E 4 HOH A 45 325 325 HOH HOH . E 4 HOH A 46 326 326 HOH HOH . E 4 HOH A 47 327 327 HOH HOH . E 4 HOH A 48 328 328 HOH HOH . E 4 HOH A 49 329 329 HOH HOH . E 4 HOH A 50 330 330 HOH HOH . E 4 HOH A 51 331 331 HOH HOH . E 4 HOH A 52 332 332 HOH HOH . E 4 HOH A 53 333 333 HOH HOH . E 4 HOH A 54 334 334 HOH HOH . E 4 HOH A 55 335 335 HOH HOH . E 4 HOH A 56 336 336 HOH HOH . E 4 HOH A 57 337 337 HOH HOH . E 4 HOH A 58 338 338 HOH HOH . E 4 HOH A 59 339 339 HOH HOH . E 4 HOH A 60 340 340 HOH HOH . E 4 HOH A 61 341 341 HOH HOH . E 4 HOH A 62 342 342 HOH HOH . E 4 HOH A 63 343 343 HOH HOH . E 4 HOH A 64 344 344 HOH HOH . E 4 HOH A 65 345 345 HOH HOH . E 4 HOH A 66 346 346 HOH HOH . E 4 HOH A 67 347 347 HOH HOH . E 4 HOH A 68 348 348 HOH HOH . E 4 HOH A 69 349 349 HOH HOH . E 4 HOH A 70 350 350 HOH HOH . E 4 HOH A 71 351 351 HOH HOH . E 4 HOH A 72 352 352 HOH HOH . E 4 HOH A 73 353 353 HOH HOH . E 4 HOH A 74 354 354 HOH HOH . E 4 HOH A 75 355 355 HOH HOH . E 4 HOH A 76 356 356 HOH HOH . E 4 HOH A 77 357 357 HOH HOH . E 4 HOH A 78 358 358 HOH HOH . E 4 HOH A 79 359 359 HOH HOH . E 4 HOH A 80 360 360 HOH HOH . E 4 HOH A 81 361 361 HOH HOH . E 4 HOH A 82 362 362 HOH HOH . E 4 HOH A 83 363 363 HOH HOH . E 4 HOH A 84 364 364 HOH HOH . E 4 HOH A 85 365 365 HOH HOH . E 4 HOH A 86 366 366 HOH HOH . E 4 HOH A 87 367 367 HOH HOH . E 4 HOH A 88 368 368 HOH HOH . E 4 HOH A 89 369 369 HOH HOH . E 4 HOH A 90 370 370 HOH HOH . E 4 HOH A 91 371 371 HOH HOH . E 4 HOH A 92 372 372 HOH HOH . E 4 HOH A 93 373 373 HOH HOH . E 4 HOH A 94 374 374 HOH HOH . E 4 HOH A 95 375 375 HOH HOH . E 4 HOH A 96 376 376 HOH HOH . E 4 HOH A 97 377 377 HOH HOH . E 4 HOH A 98 378 378 HOH HOH . E 4 HOH A 99 379 379 HOH HOH . E 4 HOH A 100 380 380 HOH HOH . E 4 HOH A 101 381 381 HOH HOH . E 4 HOH A 102 382 382 HOH HOH . E 4 HOH A 103 383 383 HOH HOH . E 4 HOH A 104 384 384 HOH HOH . E 4 HOH A 105 385 385 HOH HOH . E 4 HOH A 106 386 386 HOH HOH . E 4 HOH A 107 387 387 HOH HOH . E 4 HOH A 108 388 388 HOH HOH . E 4 HOH A 109 389 389 HOH HOH . E 4 HOH A 110 390 390 HOH HOH . E 4 HOH A 111 391 391 HOH HOH . E 4 HOH A 112 392 392 HOH HOH . E 4 HOH A 113 393 393 HOH HOH . E 4 HOH A 114 394 394 HOH HOH . E 4 HOH A 115 395 395 HOH HOH . E 4 HOH A 116 396 396 HOH HOH . E 4 HOH A 117 397 397 HOH HOH . E 4 HOH A 118 398 398 HOH HOH . E 4 HOH A 119 399 399 HOH HOH . E 4 HOH A 120 400 400 HOH HOH . E 4 HOH A 121 401 401 HOH HOH . E 4 HOH A 122 402 402 HOH HOH . E 4 HOH A 123 403 403 HOH HOH . E 4 HOH A 124 404 404 HOH HOH . E 4 HOH A 125 405 405 HOH HOH . E 4 HOH A 126 406 406 HOH HOH . E 4 HOH A 127 407 407 HOH HOH . E 4 HOH A 128 408 408 HOH HOH . E 4 HOH A 129 409 409 HOH HOH . E 4 HOH A 130 410 410 HOH HOH . E 4 HOH A 131 411 411 HOH HOH . E 4 HOH A 132 412 412 HOH HOH . E 4 HOH A 133 413 413 HOH HOH . E 4 HOH A 134 414 414 HOH HOH . E 4 HOH A 135 415 415 HOH HOH . E 4 HOH A 136 416 416 HOH HOH . E 4 HOH A 137 417 417 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 12.467 30.926 -21.158 1 29.98 ? N1A COA 1001 A 1 HETATM 2 C C2A COA . . . B 2 13.663 31.177 -20.656 1 28.48 ? C2A COA 1001 A 1 HETATM 3 N N3A COA . . . B 2 13.939 32.323 -20.057 1 26.76 ? N3A COA 1001 A 1 HETATM 4 C C4A COA . . . B 2 13 33.271 -19.941 1 24.86 ? C4A COA 1001 A 1 HETATM 5 C C5A COA . . . B 2 11.733 33.046 -20.46 1 25.43 ? C5A COA 1001 A 1 HETATM 6 C C6A COA . . . B 2 11.479 31.829 -21.081 1 27.48 ? C6A COA 1001 A 1 HETATM 7 N N6A COA . . . B 2 10.274 31.56 -21.577 1 26.28 ? N6A COA 1001 A 1 HETATM 8 N N7A COA . . . B 2 10.998 34.123 -20.203 1 23.76 ? N7A COA 1001 A 1 HETATM 9 C C8A COA . . . B 2 11.766 34.99 -19.547 1 23.07 ? C8A COA 1001 A 1 HETATM 10 N N9A COA . . . B 2 12.984 34.476 -19.38 1 24.23 ? N9A COA 1001 A 1 HETATM 11 C C1B COA . . . B 2 14.083 35.095 -18.602 1 23.78 ? C1B COA 1001 A 1 HETATM 12 C C2B COA . . . B 2 14.492 36.474 -19.117 1 24.24 ? C2B COA 1001 A 1 HETATM 13 O O2B COA . . . B 2 15.368 36.336 -20.24 1 23.28 ? O2B COA 1001 A 1 HETATM 14 C C3B COA . . . B 2 15.253 37.007 -17.904 1 22.6 ? C3B COA 1001 A 1 HETATM 15 O O3B COA . . . B 2 16.637 36.654 -17.979 1 20.24 ? O3B COA 1001 A 1 HETATM 16 P P3B COA . . . B 2 17.731 37.662 -17.364 1 18.72 ? P3B COA 1001 A 1 HETATM 17 O O7A COA . . . B 2 17.342 38.168 -16.029 1 18.05 ? O7A COA 1001 A 1 HETATM 18 O O8A COA . . . B 2 19.126 36.86 -17.339 1 18.1 ? O8A COA 1001 A 1 HETATM 19 O O9A COA . . . B 2 17.882 38.84 -18.45 1 17.44 ? O9A COA 1001 A 1 HETATM 20 C C4B COA . . . B 2 14.585 36.298 -16.723 1 22.65 ? C4B COA 1001 A 1 HETATM 21 O O4B COA . . . B 2 13.607 35.406 -17.284 1 24.59 ? O4B COA 1001 A 1 HETATM 22 C C5B COA . . . B 2 13.867 37.292 -15.811 1 20.99 ? C5B COA 1001 A 1 HETATM 23 O O5B COA . . . B 2 12.833 37.959 -16.537 1 21.68 ? O5B COA 1001 A 1 HETATM 24 P P1A COA . . . B 2 12.073 39.207 -15.867 1 18.63 ? P1A COA 1001 A 1 HETATM 25 O O1A COA . . . B 2 10.846 39.559 -16.847 1 21.67 ? O1A COA 1001 A 1 HETATM 26 O O2A COA . . . B 2 12.982 40.357 -15.668 1 16.76 ? O2A COA 1001 A 1 HETATM 27 O O3A COA . . . B 2 11.475 38.668 -14.473 1 20.32 ? O3A COA 1001 A 1 HETATM 28 P P2A COA . . . B 2 10.125 37.801 -14.34 1 18.69 ? P2A COA 1001 A 1 HETATM 29 O O4A COA . . . B 2 8.945 38.871 -14.114 1 18.19 ? O4A COA 1001 A 1 HETATM 30 O O5A COA . . . B 2 10.232 36.849 -13.211 1 20.05 ? O5A COA 1001 A 1 HETATM 31 O O6A COA . . . B 2 9.832 37.091 -15.755 1 18.69 ? O6A COA 1001 A 1 HETATM 32 C CBP COA . . . B 2 9.082 34.769 -16.069 1 16.17 ? CBP COA 1001 A 1 HETATM 33 C CCP COA . . . B 2 10.257 35.751 -16.025 1 16.9 ? CCP COA 1001 A 1 HETATM 34 C CDP COA . . . B 2 8.492 34.612 -14.666 1 15.04 ? CDP COA 1001 A 1 HETATM 35 C CEP COA . . . B 2 9.585 33.412 -16.565 1 14.64 ? CEP COA 1001 A 1 HETATM 36 C CAP COA . . . B 2 8.013 35.289 -17.033 1 15.13 ? CAP COA 1001 A 1 HETATM 37 O OAP COA . . . B 2 8.593 35.484 -18.325 1 17.17 ? OAP COA 1001 A 1 HETATM 38 C C9P COA . . . B 2 6.851 34.302 -17.166 1 17.32 ? C9P COA 1001 A 1 HETATM 39 O O9P COA . . . B 2 6.041 34.147 -16.253 1 17.15 ? O9P COA 1001 A 1 HETATM 40 N N8P COA . . . B 2 6.802 33.661 -18.332 1 15.7 ? N8P COA 1001 A 1 HETATM 41 C C7P COA . . . B 2 5.754 32.687 -18.672 1 17.18 ? C7P COA 1001 A 1 HETATM 42 C C6P COA . . . B 2 6.364 31.479 -19.388 1 17.76 ? C6P COA 1001 A 1 HETATM 43 C C5P COA . . . B 2 5.287 30.661 -20.106 1 17.25 ? C5P COA 1001 A 1 HETATM 44 O O5P COA . . . B 2 4.77 31.081 -21.139 1 16.67 ? O5P COA 1001 A 1 HETATM 45 N N4P COA . . . B 2 4.98 29.49 -19.554 1 15.86 ? N4P COA 1001 A 1 HETATM 46 C C3P COA . . . B 2 3.959 28.608 -20.137 1 16.63 ? C3P COA 1001 A 1 HETATM 47 C C2P COA . . . B 2 4.521 27.826 -21.326 1 15.93 ? C2P COA 1001 A 1 HETATM 48 S S1P COA . . . B 2 5.753 26.552 -20.867 1 20.15 ? S1P COA 1001 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #