data_3LNJ # _model_server_result.job_id eaIPF9SI68cVx-YkTsnrkw _model_server_result.datetime_utc '2025-01-10 08:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 3LNJ # _exptl.entry_id 3LNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LNJ _cell.length_a 68.976 _cell.length_b 213.478 _cell.length_c 45.536 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,G,H,J,K,L,M 1 1 E,F,I,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DSG 2 B DSG 2 1_555 B N DTR 3 B DTR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale2 B C DTR 3 B DTR 3 1_555 B N DTY 4 B DTY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 sing covale ? covale3 B C DTY 4 B DTY 4 1_555 B N DAL 5 B DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 sing covale ? covale4 B C DAL 5 B DAL 5 1_555 B N DSG 6 B DSG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 sing covale ? covale5 B C DSG 6 B DSG 6 1_555 B N DLE 7 B DLE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.284 sing covale ? covale6 B C DLE 7 B DLE 7 1_555 B N DGL 8 B DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 sing covale ? covale7 B C DGL 8 B DGL 8 1_555 B N DLY 9 B DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 sing covale ? covale8 B C DLY 9 B DLY 9 1_555 B N DLE 10 B DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 sing covale ? covale9 B C DLE 10 B DLE 10 1_555 B N DLE 11 B DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 sing covale ? covale10 B C DLE 11 B DLE 11 1_555 B N DAR 12 B DAR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 sing covale ? covale11 D C DSG 2 D DSG 2 1_555 D N DTR 3 D DTR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale12 D C DTR 3 D DTR 3 1_555 D N DTY 4 D DTY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 sing covale ? covale13 D C DTY 4 D DTY 4 1_555 D N DAL 5 D DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 sing covale ? covale14 D C DAL 5 D DAL 5 1_555 D N DSG 6 D DSG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 sing covale ? covale15 D C DSG 6 D DSG 6 1_555 D N DLE 7 D DLE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 sing covale ? covale16 D C DLE 7 D DLE 7 1_555 D N DGL 8 D DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 sing covale ? covale17 D C DGL 8 D DGL 8 1_555 D N DLY 9 D DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.255 sing covale ? covale18 D C DLY 9 D DLY 9 1_555 D N DLE 10 D DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 sing covale ? covale19 D C DLE 10 D DLE 10 1_555 D N DLE 11 D DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 sing covale ? covale20 D C DLE 11 D DLE 11 1_555 D N DAR 12 D DAR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 sing covale ? covale21 F C DTR 3 F DTR 3 1_555 F N DTY 4 F DTY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? covale ? covale22 F C DSG 6 F DSG 6 1_555 F N DLE 7 F DLE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale23 F C DLE 7 F DLE 7 1_555 F N DGL 8 F DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 ? covale ? covale24 F C DGL 8 F DGL 8 1_555 F N DLY 9 F DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? covale ? covale25 F C DLY 9 F DLY 9 1_555 F N DLE 10 F DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? covale ? covale26 F C DLE 10 F DLE 10 1_555 F N DLE 11 F DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.256 ? covale ? covale27 F C DLE 11 F DLE 11 1_555 F N DAR 12 F DAR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.283 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 313 n n C1 C2 GOL sing 314 n n C1 H11 GOL sing 315 n n C1 H12 GOL sing 316 n n O1 HO1 GOL sing 317 n n C2 O2 GOL sing 318 n n C2 C3 GOL sing 319 n n C2 H2 GOL sing 320 n n O2 HO2 GOL sing 321 n n C3 O3 GOL sing 322 n n C3 H31 GOL sing 323 n n C3 H32 GOL sing 324 n n O3 HO3 GOL sing 325 n n # _atom_sites.entry_id 3LNJ _atom_sites.fract_transf_matrix[1][1] 0.014498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SO4 A 1 201 1 SO4 SO4 . H 4 CL C 1 201 1 CL CL . I 5 GOL E 1 201 3968 GOL GOL . J 6 HOH A 1 301 5 HOH HOH . J 6 HOH A 2 302 6 HOH HOH . J 6 HOH A 3 303 8 HOH HOH . J 6 HOH A 4 304 10 HOH HOH . J 6 HOH A 5 305 11 HOH HOH . J 6 HOH A 6 306 12 HOH HOH . J 6 HOH A 7 307 13 HOH HOH . J 6 HOH A 8 308 16 HOH HOH . J 6 HOH A 9 309 19 HOH HOH . J 6 HOH A 10 310 21 HOH HOH . J 6 HOH A 11 311 23 HOH HOH . J 6 HOH A 12 312 110 HOH HOH . J 6 HOH A 13 313 111 HOH HOH . J 6 HOH A 14 314 112 HOH HOH . J 6 HOH A 15 315 113 HOH HOH . J 6 HOH A 16 316 115 HOH HOH . J 6 HOH A 17 317 116 HOH HOH . J 6 HOH A 18 318 117 HOH HOH . J 6 HOH A 19 319 119 HOH HOH . J 6 HOH A 20 320 120 HOH HOH . J 6 HOH A 21 321 121 HOH HOH . J 6 HOH A 22 322 122 HOH HOH . J 6 HOH A 23 323 123 HOH HOH . J 6 HOH A 24 324 124 HOH HOH . J 6 HOH A 25 325 125 HOH HOH . J 6 HOH A 26 326 127 HOH HOH . K 6 HOH B 1 101 34 HOH HOH . K 6 HOH B 2 102 51 HOH HOH . L 6 HOH C 1 301 3 HOH HOH . L 6 HOH C 2 302 13 HOH HOH . L 6 HOH C 3 303 15 HOH HOH . L 6 HOH C 4 304 17 HOH HOH . L 6 HOH C 5 305 20 HOH HOH . L 6 HOH C 6 306 22 HOH HOH . L 6 HOH C 7 307 110 HOH HOH . L 6 HOH C 8 308 111 HOH HOH . L 6 HOH C 9 309 112 HOH HOH . L 6 HOH C 10 310 113 HOH HOH . L 6 HOH C 11 311 114 HOH HOH . L 6 HOH C 12 312 117 HOH HOH . L 6 HOH C 13 313 118 HOH HOH . L 6 HOH C 14 314 120 HOH HOH . M 6 HOH D 1 101 24 HOH HOH . M 6 HOH D 2 102 73 HOH HOH . N 6 HOH E 1 301 4 HOH HOH . N 6 HOH E 2 302 7 HOH HOH . N 6 HOH E 3 303 9 HOH HOH . N 6 HOH E 4 304 18 HOH HOH . N 6 HOH E 5 305 110 HOH HOH . N 6 HOH E 6 306 111 HOH HOH . N 6 HOH E 7 307 112 HOH HOH . N 6 HOH E 8 308 113 HOH HOH . N 6 HOH E 9 309 114 HOH HOH . N 6 HOH E 10 310 115 HOH HOH . N 6 HOH E 11 311 116 HOH HOH . N 6 HOH E 12 312 117 HOH HOH . N 6 HOH E 13 313 118 HOH HOH . N 6 HOH E 14 314 119 HOH HOH . N 6 HOH E 15 315 62 HOH HOH . N 6 HOH E 16 316 121 HOH HOH . O 6 HOH F 1 101 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 14.137 5.221 -8.841 1 57.65 ? C1 GOL 201 E 1 HETATM 2 O O1 GOL . . . I 5 13.313 5.887 -9.796 1 55.83 ? O1 GOL 201 E 1 HETATM 3 C C2 GOL . . . I 5 15.188 6.173 -8.223 1 60.34 ? C2 GOL 201 E 1 HETATM 4 O O2 GOL . . . I 5 15.37 6.073 -6.793 1 57.35 ? O2 GOL 201 E 1 HETATM 5 C C3 GOL . . . I 5 16.515 6.084 -8.994 1 58.52 ? C3 GOL 201 E 1 HETATM 6 O O3 GOL . . . I 5 17.413 6.977 -8.378 1 58.72 ? O3 GOL 201 E 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 543 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #