data_3LNT # _model_server_result.job_id UIF2waxbVuiwYuUb4BD0Hg _model_server_result.datetime_utc '2024-11-18 03:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":990}' # _entry.id 3LNT # _exptl.entry_id 3LNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LNT _cell.length_a 119.62 _cell.length_b 119.62 _cell.length_c 103.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . A NA 250 1_555 I O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc2 C NA NA . A NA 250 1_555 I O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 C NA NA . A NA 250 1_555 I O HOH . A HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc4 C NA NA . A NA 250 1_555 I O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 246 n n C1 C3 MLI sing 247 n n C1 H11 MLI sing 248 n n C1 H12 MLI sing 249 n n C2 O6 MLI doub 250 n n C2 O7 MLI sing 251 n n C3 O8 MLI doub 252 n n C3 O9 MLI sing 253 n n # _atom_sites.entry_id 3LNT _atom_sites.fract_transf_matrix[1][1] 0.00836 _atom_sites.fract_transf_matrix[1][2] 0.004827 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 250 1 NA NA . D 3 MLI A 1 990 990 MLI MLI . E 4 EDO A 1 251 2 EDO EDO . F 3 MLI B 1 990 990 MLI MLI . G 4 EDO B 1 250 1 EDO EDO . H 4 EDO B 1 251 3 EDO EDO . I 5 HOH A 1 252 1 HOH HOH . I 5 HOH A 2 253 2 HOH HOH . I 5 HOH A 3 254 3 HOH HOH . I 5 HOH A 4 255 5 HOH HOH . I 5 HOH A 5 256 7 HOH HOH . I 5 HOH A 6 257 11 HOH HOH . I 5 HOH A 7 258 12 HOH HOH . I 5 HOH A 8 259 13 HOH HOH . I 5 HOH A 9 260 14 HOH HOH . I 5 HOH A 10 261 15 HOH HOH . I 5 HOH A 11 262 17 HOH HOH . I 5 HOH A 12 263 19 HOH HOH . I 5 HOH A 13 264 21 HOH HOH . I 5 HOH A 14 265 22 HOH HOH . I 5 HOH A 15 266 23 HOH HOH . I 5 HOH A 16 267 24 HOH HOH . I 5 HOH A 17 268 27 HOH HOH . I 5 HOH A 18 269 29 HOH HOH . I 5 HOH A 19 270 30 HOH HOH . I 5 HOH A 20 271 35 HOH HOH . I 5 HOH A 21 272 38 HOH HOH . I 5 HOH A 22 273 42 HOH HOH . I 5 HOH A 23 274 43 HOH HOH . I 5 HOH A 24 275 46 HOH HOH . I 5 HOH A 25 276 47 HOH HOH . I 5 HOH A 26 277 49 HOH HOH . I 5 HOH A 27 278 50 HOH HOH . I 5 HOH A 28 279 52 HOH HOH . I 5 HOH A 29 280 55 HOH HOH . I 5 HOH A 30 281 56 HOH HOH . I 5 HOH A 31 282 64 HOH HOH . I 5 HOH A 32 283 65 HOH HOH . I 5 HOH A 33 284 66 HOH HOH . I 5 HOH A 34 285 67 HOH HOH . I 5 HOH A 35 286 68 HOH HOH . I 5 HOH A 36 287 70 HOH HOH . I 5 HOH A 37 288 71 HOH HOH . I 5 HOH A 38 289 73 HOH HOH . I 5 HOH A 39 290 74 HOH HOH . I 5 HOH A 40 291 76 HOH HOH . I 5 HOH A 41 292 78 HOH HOH . I 5 HOH A 42 293 79 HOH HOH . I 5 HOH A 43 294 81 HOH HOH . I 5 HOH A 44 295 84 HOH HOH . I 5 HOH A 45 296 86 HOH HOH . I 5 HOH A 46 297 88 HOH HOH . I 5 HOH A 47 298 90 HOH HOH . I 5 HOH A 48 299 94 HOH HOH . I 5 HOH A 49 300 95 HOH HOH . I 5 HOH A 50 301 96 HOH HOH . I 5 HOH A 51 302 97 HOH HOH . I 5 HOH A 52 303 100 HOH HOH . I 5 HOH A 53 304 101 HOH HOH . I 5 HOH A 54 305 103 HOH HOH . I 5 HOH A 55 306 104 HOH HOH . I 5 HOH A 56 307 106 HOH HOH . I 5 HOH A 57 308 108 HOH HOH . I 5 HOH A 58 309 110 HOH HOH . I 5 HOH A 59 310 112 HOH HOH . I 5 HOH A 60 311 113 HOH HOH . I 5 HOH A 61 312 114 HOH HOH . I 5 HOH A 62 313 115 HOH HOH . I 5 HOH A 63 314 116 HOH HOH . I 5 HOH A 64 315 122 HOH HOH . I 5 HOH A 65 316 124 HOH HOH . I 5 HOH A 66 317 125 HOH HOH . I 5 HOH A 67 318 126 HOH HOH . I 5 HOH A 68 319 128 HOH HOH . I 5 HOH A 69 320 129 HOH HOH . I 5 HOH A 70 321 130 HOH HOH . I 5 HOH A 71 322 133 HOH HOH . I 5 HOH A 72 323 134 HOH HOH . I 5 HOH A 73 324 135 HOH HOH . I 5 HOH A 74 325 136 HOH HOH . I 5 HOH A 75 326 138 HOH HOH . I 5 HOH A 76 327 139 HOH HOH . I 5 HOH A 77 328 140 HOH HOH . I 5 HOH A 78 329 143 HOH HOH . I 5 HOH A 79 330 144 HOH HOH . I 5 HOH A 80 331 147 HOH HOH . I 5 HOH A 81 332 149 HOH HOH . I 5 HOH A 82 333 150 HOH HOH . I 5 HOH A 83 334 152 HOH HOH . I 5 HOH A 84 335 153 HOH HOH . I 5 HOH A 85 336 154 HOH HOH . I 5 HOH A 86 337 155 HOH HOH . I 5 HOH A 87 338 156 HOH HOH . I 5 HOH A 88 339 158 HOH HOH . I 5 HOH A 89 340 166 HOH HOH . I 5 HOH A 90 341 167 HOH HOH . I 5 HOH A 91 342 169 HOH HOH . I 5 HOH A 92 343 170 HOH HOH . I 5 HOH A 93 344 174 HOH HOH . I 5 HOH A 94 345 177 HOH HOH . I 5 HOH A 95 346 178 HOH HOH . I 5 HOH A 96 347 180 HOH HOH . I 5 HOH A 97 348 181 HOH HOH . I 5 HOH A 98 349 186 HOH HOH . I 5 HOH A 99 350 191 HOH HOH . I 5 HOH A 100 351 192 HOH HOH . I 5 HOH A 101 352 193 HOH HOH . I 5 HOH A 102 353 195 HOH HOH . I 5 HOH A 103 354 196 HOH HOH . I 5 HOH A 104 355 198 HOH HOH . I 5 HOH A 105 356 205 HOH HOH . I 5 HOH A 106 357 206 HOH HOH . I 5 HOH A 107 358 209 HOH HOH . I 5 HOH A 108 359 210 HOH HOH . I 5 HOH A 109 360 212 HOH HOH . I 5 HOH A 110 361 213 HOH HOH . I 5 HOH A 111 362 214 HOH HOH . I 5 HOH A 112 363 215 HOH HOH . I 5 HOH A 113 364 217 HOH HOH . I 5 HOH A 114 365 220 HOH HOH . I 5 HOH A 115 366 221 HOH HOH . I 5 HOH A 116 367 222 HOH HOH . I 5 HOH A 117 368 223 HOH HOH . I 5 HOH A 118 369 226 HOH HOH . I 5 HOH A 119 370 228 HOH HOH . I 5 HOH A 120 371 229 HOH HOH . I 5 HOH A 121 372 230 HOH HOH . I 5 HOH A 122 373 231 HOH HOH . I 5 HOH A 123 374 232 HOH HOH . I 5 HOH A 124 375 234 HOH HOH . I 5 HOH A 125 376 235 HOH HOH . I 5 HOH A 126 377 236 HOH HOH . I 5 HOH A 127 378 237 HOH HOH . I 5 HOH A 128 379 238 HOH HOH . I 5 HOH A 129 380 239 HOH HOH . I 5 HOH A 130 381 240 HOH HOH . I 5 HOH A 131 382 241 HOH HOH . I 5 HOH A 132 383 242 HOH HOH . I 5 HOH A 133 384 243 HOH HOH . I 5 HOH A 134 385 244 HOH HOH . I 5 HOH A 135 386 245 HOH HOH . I 5 HOH A 136 387 246 HOH HOH . J 5 HOH B 1 252 252 HOH HOH . J 5 HOH B 2 253 253 HOH HOH . J 5 HOH B 3 254 254 HOH HOH . J 5 HOH B 4 255 255 HOH HOH . J 5 HOH B 5 256 256 HOH HOH . J 5 HOH B 6 257 4 HOH HOH . J 5 HOH B 7 258 6 HOH HOH . J 5 HOH B 8 259 8 HOH HOH . J 5 HOH B 9 260 9 HOH HOH . J 5 HOH B 10 261 10 HOH HOH . J 5 HOH B 11 262 16 HOH HOH . J 5 HOH B 12 263 18 HOH HOH . J 5 HOH B 13 264 20 HOH HOH . J 5 HOH B 14 265 25 HOH HOH . J 5 HOH B 15 266 26 HOH HOH . J 5 HOH B 16 267 28 HOH HOH . J 5 HOH B 17 268 31 HOH HOH . J 5 HOH B 18 269 32 HOH HOH . J 5 HOH B 19 270 33 HOH HOH . J 5 HOH B 20 271 34 HOH HOH . J 5 HOH B 21 272 36 HOH HOH . J 5 HOH B 22 273 37 HOH HOH . J 5 HOH B 23 274 39 HOH HOH . J 5 HOH B 24 275 40 HOH HOH . J 5 HOH B 25 276 41 HOH HOH . J 5 HOH B 26 277 44 HOH HOH . J 5 HOH B 27 278 45 HOH HOH . J 5 HOH B 28 279 48 HOH HOH . J 5 HOH B 29 280 51 HOH HOH . J 5 HOH B 30 281 53 HOH HOH . J 5 HOH B 31 282 54 HOH HOH . J 5 HOH B 32 283 57 HOH HOH . J 5 HOH B 33 284 58 HOH HOH . J 5 HOH B 34 285 59 HOH HOH . J 5 HOH B 35 286 60 HOH HOH . J 5 HOH B 36 287 61 HOH HOH . J 5 HOH B 37 288 62 HOH HOH . J 5 HOH B 38 289 63 HOH HOH . J 5 HOH B 39 290 69 HOH HOH . J 5 HOH B 40 291 72 HOH HOH . J 5 HOH B 41 292 75 HOH HOH . J 5 HOH B 42 293 77 HOH HOH . J 5 HOH B 43 294 80 HOH HOH . J 5 HOH B 44 295 82 HOH HOH . J 5 HOH B 45 296 83 HOH HOH . J 5 HOH B 46 297 85 HOH HOH . J 5 HOH B 47 298 87 HOH HOH . J 5 HOH B 48 299 89 HOH HOH . J 5 HOH B 49 300 91 HOH HOH . J 5 HOH B 50 301 92 HOH HOH . J 5 HOH B 51 302 93 HOH HOH . J 5 HOH B 52 303 98 HOH HOH . J 5 HOH B 53 304 99 HOH HOH . J 5 HOH B 54 305 102 HOH HOH . J 5 HOH B 55 306 105 HOH HOH . J 5 HOH B 56 307 107 HOH HOH . J 5 HOH B 57 308 109 HOH HOH . J 5 HOH B 58 309 111 HOH HOH . J 5 HOH B 59 310 117 HOH HOH . J 5 HOH B 60 311 118 HOH HOH . J 5 HOH B 61 312 119 HOH HOH . J 5 HOH B 62 313 120 HOH HOH . J 5 HOH B 63 314 121 HOH HOH . J 5 HOH B 64 315 123 HOH HOH . J 5 HOH B 65 316 127 HOH HOH . J 5 HOH B 66 317 131 HOH HOH . J 5 HOH B 67 318 132 HOH HOH . J 5 HOH B 68 319 137 HOH HOH . J 5 HOH B 69 320 141 HOH HOH . J 5 HOH B 70 321 142 HOH HOH . J 5 HOH B 71 322 145 HOH HOH . J 5 HOH B 72 323 146 HOH HOH . J 5 HOH B 73 324 148 HOH HOH . J 5 HOH B 74 325 151 HOH HOH . J 5 HOH B 75 326 157 HOH HOH . J 5 HOH B 76 327 159 HOH HOH . J 5 HOH B 77 328 160 HOH HOH . J 5 HOH B 78 329 161 HOH HOH . J 5 HOH B 79 330 162 HOH HOH . J 5 HOH B 80 331 163 HOH HOH . J 5 HOH B 81 332 164 HOH HOH . J 5 HOH B 82 333 165 HOH HOH . J 5 HOH B 83 334 168 HOH HOH . J 5 HOH B 84 335 171 HOH HOH . J 5 HOH B 85 336 172 HOH HOH . J 5 HOH B 86 337 173 HOH HOH . J 5 HOH B 87 338 175 HOH HOH . J 5 HOH B 88 339 176 HOH HOH . J 5 HOH B 89 340 179 HOH HOH . J 5 HOH B 90 341 182 HOH HOH . J 5 HOH B 91 342 183 HOH HOH . J 5 HOH B 92 343 184 HOH HOH . J 5 HOH B 93 344 185 HOH HOH . J 5 HOH B 94 345 187 HOH HOH . J 5 HOH B 95 346 188 HOH HOH . J 5 HOH B 96 347 189 HOH HOH . J 5 HOH B 97 348 190 HOH HOH . J 5 HOH B 98 349 194 HOH HOH . J 5 HOH B 99 350 197 HOH HOH . J 5 HOH B 100 351 199 HOH HOH . J 5 HOH B 101 352 200 HOH HOH . J 5 HOH B 102 353 201 HOH HOH . J 5 HOH B 103 354 202 HOH HOH . J 5 HOH B 104 355 203 HOH HOH . J 5 HOH B 105 356 204 HOH HOH . J 5 HOH B 106 357 207 HOH HOH . J 5 HOH B 107 358 208 HOH HOH . J 5 HOH B 108 359 211 HOH HOH . J 5 HOH B 109 360 216 HOH HOH . J 5 HOH B 110 361 218 HOH HOH . J 5 HOH B 111 362 219 HOH HOH . J 5 HOH B 112 363 224 HOH HOH . J 5 HOH B 113 364 225 HOH HOH . J 5 HOH B 114 365 227 HOH HOH . J 5 HOH B 115 366 233 HOH HOH . J 5 HOH B 116 367 247 HOH HOH . J 5 HOH B 117 368 248 HOH HOH . J 5 HOH B 118 369 249 HOH HOH . J 5 HOH B 119 370 250 HOH HOH . J 5 HOH B 120 371 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . F 3 -54.097 -20.263 -25.172 1 35.41 ? C1 MLI 990 B 1 HETATM 2 C C2 MLI . . . F 3 -53.121 -19.391 -24.388 1 36.39 ? C2 MLI 990 B 1 HETATM 3 C C3 MLI . . . F 3 -53.42 -21.245 -26.121 1 34.69 ? C3 MLI 990 B 1 HETATM 4 O O6 MLI . . . F 3 -53.625 -18.407 -23.807 1 39.84 ? O6 MLI 990 B 1 HETATM 5 O O7 MLI . . . F 3 -51.888 -19.653 -24.329 1 33.93 ? O7 MLI 990 B 1 HETATM 6 O O8 MLI . . . F 3 -52.959 -20.795 -27.197 1 35.39 ? O8 MLI 990 B 1 HETATM 7 O O9 MLI . . . F 3 -53.33 -22.457 -25.802 1 29.07 ? O9 MLI 990 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #