data_3LO2 # _model_server_result.job_id G1f0d4Jc118WI-BVyIq0Mw _model_server_result.datetime_utc '2024-12-22 05:56:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":32}' # _entry.id 3LO2 # _exptl.entry_id 3LO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LO2 _cell.length_a 43.675 _cell.length_b 29.882 _cell.length_c 41.552 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 4 A CYS 4 1_555 A SG CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 9 A CYS 9 1_555 A SG CYS 29 A CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 2 B CYS 2 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 B SG CYS 4 B CYS 4 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 B SG CYS 9 B CYS 9 1_555 B SG CYS 29 B CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 142 n n C1 H11 MPD sing 143 n n C1 H12 MPD sing 144 n n C1 H13 MPD sing 145 n n C2 O2 MPD sing 146 n n C2 CM MPD sing 147 n n C2 C3 MPD sing 148 n n O2 HO2 MPD sing 149 n n CM HM1 MPD sing 150 n n CM HM2 MPD sing 151 n n CM HM3 MPD sing 152 n n C3 C4 MPD sing 153 n n C3 H31 MPD sing 154 n n C3 H32 MPD sing 155 n n C4 O4 MPD sing 156 n n C4 C5 MPD sing 157 n n C4 H4 MPD sing 158 n n O4 HO4 MPD sing 159 n n C5 H51 MPD sing 160 n n C5 H52 MPD sing 161 n n C5 H53 MPD sing 162 n n # _atom_sites.entry_id 3LO2 _atom_sites.fract_transf_matrix[1][1] 0.022896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 32 32 MPD MPD . D 2 MPD A 1 33 33 MPD MPD . E 3 TFA A 1 7185 7185 TFA TFA . F 4 SO4 B 1 31 1 SO4 SO4 . G 5 HOH A 1 34 34 HOH HOH . G 5 HOH A 2 35 35 HOH HOH . G 5 HOH A 3 36 36 HOH HOH . G 5 HOH A 4 37 37 HOH HOH . G 5 HOH A 5 38 38 HOH HOH . G 5 HOH A 6 39 39 HOH HOH . G 5 HOH A 7 40 40 HOH HOH . G 5 HOH A 8 41 41 HOH HOH . G 5 HOH A 9 42 42 HOH HOH . G 5 HOH A 10 43 43 HOH HOH . G 5 HOH A 11 44 44 HOH HOH . G 5 HOH A 12 45 45 HOH HOH . G 5 HOH A 13 46 46 HOH HOH . G 5 HOH A 14 47 47 HOH HOH . G 5 HOH A 15 48 48 HOH HOH . G 5 HOH A 16 49 49 HOH HOH . G 5 HOH A 17 50 50 HOH HOH . G 5 HOH A 18 51 51 HOH HOH . G 5 HOH A 19 52 52 HOH HOH . G 5 HOH A 20 53 53 HOH HOH . G 5 HOH A 21 54 54 HOH HOH . G 5 HOH A 22 55 55 HOH HOH . G 5 HOH A 23 56 56 HOH HOH . G 5 HOH A 24 57 57 HOH HOH . G 5 HOH A 25 58 58 HOH HOH . G 5 HOH A 26 59 59 HOH HOH . G 5 HOH A 27 60 60 HOH HOH . G 5 HOH A 28 61 61 HOH HOH . G 5 HOH A 29 62 62 HOH HOH . G 5 HOH A 30 63 63 HOH HOH . G 5 HOH A 31 64 64 HOH HOH . G 5 HOH A 32 65 65 HOH HOH . G 5 HOH A 33 66 66 HOH HOH . G 5 HOH A 34 67 67 HOH HOH . G 5 HOH A 35 68 68 HOH HOH . G 5 HOH A 36 69 69 HOH HOH . G 5 HOH A 37 70 70 HOH HOH . G 5 HOH A 38 71 71 HOH HOH . G 5 HOH A 39 72 72 HOH HOH . G 5 HOH A 40 76 76 HOH HOH . H 5 HOH B 1 32 32 HOH HOH . H 5 HOH B 2 33 33 HOH HOH . H 5 HOH B 3 34 34 HOH HOH . H 5 HOH B 4 35 35 HOH HOH . H 5 HOH B 5 36 36 HOH HOH . H 5 HOH B 6 37 37 HOH HOH . H 5 HOH B 7 38 38 HOH HOH . H 5 HOH B 8 39 39 HOH HOH . H 5 HOH B 9 40 40 HOH HOH . H 5 HOH B 10 41 41 HOH HOH . H 5 HOH B 11 42 42 HOH HOH . H 5 HOH B 12 43 43 HOH HOH . H 5 HOH B 13 44 44 HOH HOH . H 5 HOH B 14 45 45 HOH HOH . H 5 HOH B 15 46 46 HOH HOH . H 5 HOH B 16 47 47 HOH HOH . H 5 HOH B 17 48 48 HOH HOH . H 5 HOH B 18 49 49 HOH HOH . H 5 HOH B 19 50 50 HOH HOH . H 5 HOH B 20 51 51 HOH HOH . H 5 HOH B 21 52 52 HOH HOH . H 5 HOH B 22 53 53 HOH HOH . H 5 HOH B 23 54 54 HOH HOH . H 5 HOH B 24 55 55 HOH HOH . H 5 HOH B 25 56 56 HOH HOH . H 5 HOH B 26 59 59 HOH HOH . H 5 HOH B 27 60 60 HOH HOH . H 5 HOH B 28 62 62 HOH HOH . H 5 HOH B 29 64 64 HOH HOH . H 5 HOH B 30 65 65 HOH HOH . H 5 HOH B 31 68 68 HOH HOH . H 5 HOH B 32 74 74 HOH HOH . H 5 HOH B 33 75 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 7.749 7.266 -5.188 1 36.03 ? C1 MPD 32 A 1 HETATM 2 C C2 MPD . . . C 2 8.012 6.807 -3.76 1 37.42 ? C2 MPD 32 A 1 HETATM 3 O O2 MPD . . . C 2 9.421 6.432 -3.633 1 36.86 ? O2 MPD 32 A 1 HETATM 4 C CM MPD . . . C 2 7.687 7.908 -2.763 1 37.59 ? CM MPD 32 A 1 HETATM 5 C C3 MPD . . . C 2 7.063 5.633 -3.549 1 36.14 ? C3 MPD 32 A 1 HETATM 6 C C4 MPD . . . C 2 6.999 4.998 -2.172 1 36.28 ? C4 MPD 32 A 1 HETATM 7 O O4 MPD . . . C 2 5.946 4.063 -2.179 1 37.33 ? O4 MPD 32 A 1 HETATM 8 C C5 MPD . . . C 2 8.26 4.218 -1.874 1 33.41 ? C5 MPD 32 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #