data_3LOJ # _model_server_result.job_id BHC_i5o8LLhS2FBSRfpmMA _model_server_result.datetime_utc '2024-11-13 06:17:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3loj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 3LOJ # _exptl.entry_id 3LOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LOJ _cell.length_a 54.591 _cell.length_b 54.591 _cell.length_c 83.051 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -27.2955 47.277193 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -54.591 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C TRS . A TRS 204 1_555 E C1 TRS . A TRS 204 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.55 ? metalc ? metalc1 F MG MG . A MG 155 1_555 B O1A DUP . A DUP 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 F MG MG . A MG 155 1_555 B O2G DUP . A DUP 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 F MG MG . A MG 155 1_555 B O1B DUP . A DUP 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 F MG MG . A MG 155 1_555 H O HOH . A HOH 212 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 F MG MG . A MG 155 1_555 H O HOH . A HOH 239 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 F MG MG . A MG 155 1_555 H O HOH . A HOH 245 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 G MN MN . A MN 156 1_555 B O2G DUP . A DUP 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc8 G MN MN . A MN 156 1_555 B O1B DUP . A DUP 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G MN MN . A MN 156 1_555 B O1A DUP . A DUP 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc10 G MN MN . A MN 156 1_555 H O HOH . A HOH 212 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc11 G MN MN . A MN 156 1_555 H O HOH . A HOH 239 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc12 G MN MN . A MN 156 1_555 H O HOH . A HOH 245 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 3LOJ _atom_sites.fract_transf_matrix[1][1] 0.018318 _atom_sites.fract_transf_matrix[1][2] 0.010576 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP A 1 201 201 DUP DUP . C 3 GOL A 1 202 202 GOL GOL . D 3 GOL A 1 203 203 GOL GOL . E 4 TRS A 1 204 204 TRS TRS . F 5 MG A 1 155 155 MG MG . G 6 MN A 1 156 156 MN MN . H 7 HOH A 1 157 157 HOH HOH . H 7 HOH A 2 158 158 HOH HOH . H 7 HOH A 3 159 159 HOH HOH . H 7 HOH A 4 160 160 HOH HOH . H 7 HOH A 5 161 161 HOH HOH . H 7 HOH A 6 162 162 HOH HOH . H 7 HOH A 7 163 163 HOH HOH . H 7 HOH A 8 164 164 HOH HOH . H 7 HOH A 9 165 165 HOH HOH . H 7 HOH A 10 166 166 HOH HOH . H 7 HOH A 11 167 167 HOH HOH . H 7 HOH A 12 168 168 HOH HOH . H 7 HOH A 13 169 169 HOH HOH . H 7 HOH A 14 170 170 HOH HOH . H 7 HOH A 15 171 171 HOH HOH . H 7 HOH A 16 172 172 HOH HOH . H 7 HOH A 17 173 173 HOH HOH . H 7 HOH A 18 174 174 HOH HOH . H 7 HOH A 19 175 175 HOH HOH . H 7 HOH A 20 176 176 HOH HOH . H 7 HOH A 21 177 177 HOH HOH . H 7 HOH A 22 178 178 HOH HOH . H 7 HOH A 23 179 179 HOH HOH . H 7 HOH A 24 180 180 HOH HOH . H 7 HOH A 25 181 181 HOH HOH . H 7 HOH A 26 182 182 HOH HOH . H 7 HOH A 27 183 183 HOH HOH . H 7 HOH A 28 184 184 HOH HOH . H 7 HOH A 29 185 185 HOH HOH . H 7 HOH A 30 186 186 HOH HOH . H 7 HOH A 31 187 187 HOH HOH . H 7 HOH A 32 188 188 HOH HOH . H 7 HOH A 33 189 189 HOH HOH . H 7 HOH A 34 190 190 HOH HOH . H 7 HOH A 35 191 191 HOH HOH . H 7 HOH A 36 192 192 HOH HOH . H 7 HOH A 37 194 194 HOH HOH . H 7 HOH A 38 195 195 HOH HOH . H 7 HOH A 39 196 196 HOH HOH . H 7 HOH A 40 197 197 HOH HOH . H 7 HOH A 41 198 198 HOH HOH . H 7 HOH A 42 199 199 HOH HOH . H 7 HOH A 43 200 200 HOH HOH . H 7 HOH A 44 205 205 HOH HOH . H 7 HOH A 45 206 206 HOH HOH . H 7 HOH A 46 207 207 HOH HOH . H 7 HOH A 47 208 208 HOH HOH . H 7 HOH A 48 209 209 HOH HOH . H 7 HOH A 49 210 210 HOH HOH . H 7 HOH A 50 211 211 HOH HOH . H 7 HOH A 51 212 212 HOH HOH . H 7 HOH A 52 213 213 HOH HOH . H 7 HOH A 53 214 214 HOH HOH . H 7 HOH A 54 215 215 HOH HOH . H 7 HOH A 55 216 216 HOH HOH . H 7 HOH A 56 217 217 HOH HOH . H 7 HOH A 57 218 218 HOH HOH . H 7 HOH A 58 219 219 HOH HOH . H 7 HOH A 59 220 220 HOH HOH . H 7 HOH A 60 221 221 HOH HOH . H 7 HOH A 61 222 222 HOH HOH . H 7 HOH A 62 223 223 HOH HOH . H 7 HOH A 63 224 224 HOH HOH . H 7 HOH A 64 225 225 HOH HOH . H 7 HOH A 65 226 226 HOH HOH . H 7 HOH A 66 227 227 HOH HOH . H 7 HOH A 67 228 228 HOH HOH . H 7 HOH A 68 229 229 HOH HOH . H 7 HOH A 69 230 230 HOH HOH . H 7 HOH A 70 231 231 HOH HOH . H 7 HOH A 71 232 232 HOH HOH . H 7 HOH A 72 233 233 HOH HOH . H 7 HOH A 73 234 234 HOH HOH . H 7 HOH A 74 235 235 HOH HOH . H 7 HOH A 75 236 236 HOH HOH . H 7 HOH A 76 237 237 HOH HOH . H 7 HOH A 77 238 238 HOH HOH . H 7 HOH A 78 239 239 HOH HOH . H 7 HOH A 79 240 240 HOH HOH . H 7 HOH A 80 241 241 HOH HOH . H 7 HOH A 81 242 242 HOH HOH . H 7 HOH A 82 243 243 HOH HOH . H 7 HOH A 83 244 244 HOH HOH . H 7 HOH A 84 245 245 HOH HOH . H 7 HOH A 85 246 246 HOH HOH . H 7 HOH A 86 247 247 HOH HOH . H 7 HOH A 87 248 248 HOH HOH . H 7 HOH A 88 250 250 HOH HOH . H 7 HOH A 89 251 251 HOH HOH . H 7 HOH A 90 252 252 HOH HOH . H 7 HOH A 91 253 253 HOH HOH . H 7 HOH A 92 254 254 HOH HOH . H 7 HOH A 93 255 255 HOH HOH . H 7 HOH A 94 256 256 HOH HOH . H 7 HOH A 95 257 257 HOH HOH . H 7 HOH A 96 258 258 HOH HOH . H 7 HOH A 97 259 259 HOH HOH . H 7 HOH A 98 260 260 HOH HOH . H 7 HOH A 99 261 261 HOH HOH . H 7 HOH A 100 262 262 HOH HOH . H 7 HOH A 101 263 263 HOH HOH . H 7 HOH A 102 264 264 HOH HOH . H 7 HOH A 103 265 265 HOH HOH . H 7 HOH A 104 266 266 HOH HOH . H 7 HOH A 105 267 267 HOH HOH . H 7 HOH A 106 268 268 HOH HOH . H 7 HOH A 107 269 269 HOH HOH . H 7 HOH A 108 270 270 HOH HOH . H 7 HOH A 109 271 271 HOH HOH . H 7 HOH A 110 272 272 HOH HOH . H 7 HOH A 111 273 273 HOH HOH . H 7 HOH A 112 274 274 HOH HOH . H 7 HOH A 113 275 275 HOH HOH . H 7 HOH A 114 276 276 HOH HOH . H 7 HOH A 115 277 277 HOH HOH . H 7 HOH A 116 278 278 HOH HOH . H 7 HOH A 117 279 279 HOH HOH . H 7 HOH A 118 280 280 HOH HOH . H 7 HOH A 119 281 281 HOH HOH . H 7 HOH A 120 282 282 HOH HOH . H 7 HOH A 121 283 283 HOH HOH . H 7 HOH A 122 284 284 HOH HOH . H 7 HOH A 123 285 285 HOH HOH . H 7 HOH A 124 286 286 HOH HOH . H 7 HOH A 125 287 287 HOH HOH . H 7 HOH A 126 288 288 HOH HOH . H 7 HOH A 127 289 289 HOH HOH . H 7 HOH A 128 290 290 HOH HOH . H 7 HOH A 129 291 291 HOH HOH . H 7 HOH A 130 292 292 HOH HOH . H 7 HOH A 131 293 293 HOH HOH . H 7 HOH A 132 294 294 HOH HOH . H 7 HOH A 133 295 295 HOH HOH . H 7 HOH A 134 296 296 HOH HOH . H 7 HOH A 135 297 297 HOH HOH . H 7 HOH A 136 298 298 HOH HOH . H 7 HOH A 137 299 299 HOH HOH . H 7 HOH A 138 300 300 HOH HOH . H 7 HOH A 139 301 301 HOH HOH . H 7 HOH A 140 302 302 HOH HOH . H 7 HOH A 141 303 303 HOH HOH . H 7 HOH A 142 304 304 HOH HOH . H 7 HOH A 143 305 305 HOH HOH . H 7 HOH A 144 306 306 HOH HOH . H 7 HOH A 145 307 307 HOH HOH . H 7 HOH A 146 308 308 HOH HOH . H 7 HOH A 147 309 309 HOH HOH . H 7 HOH A 148 311 311 HOH HOH . H 7 HOH A 149 312 312 HOH HOH . H 7 HOH A 150 313 313 HOH HOH . H 7 HOH A 151 314 314 HOH HOH . H 7 HOH A 152 315 315 HOH HOH . H 7 HOH A 153 316 316 HOH HOH . H 7 HOH A 154 317 317 HOH HOH . H 7 HOH A 155 318 318 HOH HOH . H 7 HOH A 156 319 319 HOH HOH . H 7 HOH A 157 320 320 HOH HOH . H 7 HOH A 158 321 321 HOH HOH . H 7 HOH A 159 322 322 HOH HOH . H 7 HOH A 160 323 323 HOH HOH . H 7 HOH A 161 324 324 HOH HOH . H 7 HOH A 162 325 325 HOH HOH . H 7 HOH A 163 326 326 HOH HOH . H 7 HOH A 164 327 327 HOH HOH . H 7 HOH A 165 328 328 HOH HOH . H 7 HOH A 166 329 329 HOH HOH . H 7 HOH A 167 330 330 HOH HOH . H 7 HOH A 168 331 331 HOH HOH . H 7 HOH A 169 332 332 HOH HOH . H 7 HOH A 170 333 333 HOH HOH . H 7 HOH A 171 334 334 HOH HOH . H 7 HOH A 172 335 335 HOH HOH . H 7 HOH A 173 336 336 HOH HOH . H 7 HOH A 174 337 337 HOH HOH . H 7 HOH A 175 338 338 HOH HOH . H 7 HOH A 176 339 339 HOH HOH . H 7 HOH A 177 340 340 HOH HOH . H 7 HOH A 178 341 341 HOH HOH . H 7 HOH A 179 342 342 HOH HOH . H 7 HOH A 180 343 343 HOH HOH . H 7 HOH A 181 344 344 HOH HOH . H 7 HOH A 182 345 345 HOH HOH . H 7 HOH A 183 346 346 HOH HOH . H 7 HOH A 184 347 347 HOH HOH . H 7 HOH A 185 348 348 HOH HOH . H 7 HOH A 186 349 349 HOH HOH . H 7 HOH A 187 350 350 HOH HOH . H 7 HOH A 188 352 352 HOH HOH . H 7 HOH A 189 353 353 HOH HOH . H 7 HOH A 190 354 354 HOH HOH . H 7 HOH A 191 355 355 HOH HOH . H 7 HOH A 192 356 356 HOH HOH . H 7 HOH A 193 357 357 HOH HOH . H 7 HOH A 194 358 358 HOH HOH . H 7 HOH A 195 359 359 HOH HOH . H 7 HOH A 196 360 360 HOH HOH . H 7 HOH A 197 361 361 HOH HOH . H 7 HOH A 198 362 362 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -13.809 36.944 -0.034 1 48.15 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 -15.132 36.828 -0.562 1 45.33 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 -13.61 35.57 0.589 1 49.05 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 -13.938 34.635 -0.407 1 36.71 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 -12.19 35.4 1.058 1 47.66 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 -12.273 34.629 2.249 1 45.31 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #