data_3LOM # _model_server_result.job_id Enm515-rGemyWIbMwuZD7w _model_server_result.datetime_utc '2024-11-05 00:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3}' # _entry.id 3LOM # _exptl.entry_id 3LOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LOM _cell.length_a 94.775 _cell.length_b 94.775 _cell.length_c 148.345 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3LOM _atom_sites.fract_transf_matrix[1][1] 0.010551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 2 2 PO4 PO4 . D 2 PO4 B 1 1 1 PO4 PO4 . E 2 PO4 B 1 3 3 PO4 PO4 . F 3 HOH A 1 318 8 HOH HOH . F 3 HOH A 2 319 11 HOH HOH . F 3 HOH A 3 320 12 HOH HOH . F 3 HOH A 4 321 14 HOH HOH . F 3 HOH A 5 322 15 HOH HOH . F 3 HOH A 6 323 18 HOH HOH . F 3 HOH A 7 324 21 HOH HOH . F 3 HOH A 8 325 22 HOH HOH . F 3 HOH A 9 326 25 HOH HOH . F 3 HOH A 10 327 27 HOH HOH . F 3 HOH A 11 328 28 HOH HOH . F 3 HOH A 12 329 29 HOH HOH . F 3 HOH A 13 330 35 HOH HOH . F 3 HOH A 14 331 38 HOH HOH . F 3 HOH A 15 332 40 HOH HOH . F 3 HOH A 16 333 44 HOH HOH . F 3 HOH A 17 334 46 HOH HOH . F 3 HOH A 18 335 48 HOH HOH . F 3 HOH A 19 336 49 HOH HOH . F 3 HOH A 20 337 50 HOH HOH . F 3 HOH A 21 338 54 HOH HOH . F 3 HOH A 22 339 55 HOH HOH . F 3 HOH A 23 340 56 HOH HOH . F 3 HOH A 24 341 57 HOH HOH . F 3 HOH A 25 342 62 HOH HOH . F 3 HOH A 26 343 63 HOH HOH . F 3 HOH A 27 344 64 HOH HOH . F 3 HOH A 28 345 65 HOH HOH . F 3 HOH A 29 346 66 HOH HOH . F 3 HOH A 30 347 67 HOH HOH . F 3 HOH A 31 348 68 HOH HOH . F 3 HOH A 32 349 69 HOH HOH . F 3 HOH A 33 350 70 HOH HOH . F 3 HOH A 34 351 71 HOH HOH . F 3 HOH A 35 352 72 HOH HOH . F 3 HOH A 36 353 73 HOH HOH . F 3 HOH A 37 354 74 HOH HOH . F 3 HOH A 38 355 75 HOH HOH . F 3 HOH A 39 356 76 HOH HOH . F 3 HOH A 40 357 78 HOH HOH . F 3 HOH A 41 358 79 HOH HOH . F 3 HOH A 42 359 80 HOH HOH . F 3 HOH A 43 360 81 HOH HOH . F 3 HOH A 44 361 88 HOH HOH . F 3 HOH A 45 362 89 HOH HOH . F 3 HOH A 46 363 91 HOH HOH . F 3 HOH A 47 364 92 HOH HOH . F 3 HOH A 48 365 93 HOH HOH . F 3 HOH A 49 366 94 HOH HOH . F 3 HOH A 50 367 96 HOH HOH . F 3 HOH A 51 368 110 HOH HOH . F 3 HOH A 52 369 117 HOH HOH . F 3 HOH A 53 370 118 HOH HOH . F 3 HOH A 54 371 119 HOH HOH . F 3 HOH A 55 372 127 HOH HOH . F 3 HOH A 56 373 128 HOH HOH . F 3 HOH A 57 374 129 HOH HOH . F 3 HOH A 58 375 130 HOH HOH . F 3 HOH A 59 376 132 HOH HOH . F 3 HOH A 60 377 135 HOH HOH . F 3 HOH A 61 378 137 HOH HOH . F 3 HOH A 62 379 138 HOH HOH . F 3 HOH A 63 380 139 HOH HOH . F 3 HOH A 64 381 144 HOH HOH . F 3 HOH A 65 382 145 HOH HOH . F 3 HOH A 66 383 147 HOH HOH . F 3 HOH A 67 384 148 HOH HOH . G 3 HOH B 1 318 3 HOH HOH . G 3 HOH B 2 319 5 HOH HOH . G 3 HOH B 3 320 6 HOH HOH . G 3 HOH B 4 321 9 HOH HOH . G 3 HOH B 5 322 10 HOH HOH . G 3 HOH B 6 323 13 HOH HOH . G 3 HOH B 7 324 17 HOH HOH . G 3 HOH B 8 325 20 HOH HOH . G 3 HOH B 9 326 23 HOH HOH . G 3 HOH B 10 327 24 HOH HOH . G 3 HOH B 11 328 30 HOH HOH . G 3 HOH B 12 329 31 HOH HOH . G 3 HOH B 13 330 36 HOH HOH . G 3 HOH B 14 331 37 HOH HOH . G 3 HOH B 15 332 39 HOH HOH . G 3 HOH B 16 333 43 HOH HOH . G 3 HOH B 17 334 47 HOH HOH . G 3 HOH B 18 335 51 HOH HOH . G 3 HOH B 19 336 52 HOH HOH . G 3 HOH B 20 337 53 HOH HOH . G 3 HOH B 21 338 58 HOH HOH . G 3 HOH B 22 339 59 HOH HOH . G 3 HOH B 23 340 60 HOH HOH . G 3 HOH B 24 341 61 HOH HOH . G 3 HOH B 25 342 77 HOH HOH . G 3 HOH B 26 343 82 HOH HOH . G 3 HOH B 27 344 83 HOH HOH . G 3 HOH B 28 345 84 HOH HOH . G 3 HOH B 29 346 85 HOH HOH . G 3 HOH B 30 347 86 HOH HOH . G 3 HOH B 31 348 87 HOH HOH . G 3 HOH B 32 349 90 HOH HOH . G 3 HOH B 33 350 95 HOH HOH . G 3 HOH B 34 351 97 HOH HOH . G 3 HOH B 35 352 98 HOH HOH . G 3 HOH B 36 353 99 HOH HOH . G 3 HOH B 37 354 100 HOH HOH . G 3 HOH B 38 355 101 HOH HOH . G 3 HOH B 39 356 102 HOH HOH . G 3 HOH B 40 357 103 HOH HOH . G 3 HOH B 41 358 104 HOH HOH . G 3 HOH B 42 359 105 HOH HOH . G 3 HOH B 43 360 106 HOH HOH . G 3 HOH B 44 361 107 HOH HOH . G 3 HOH B 45 362 108 HOH HOH . G 3 HOH B 46 363 109 HOH HOH . G 3 HOH B 47 364 111 HOH HOH . G 3 HOH B 48 365 112 HOH HOH . G 3 HOH B 49 366 113 HOH HOH . G 3 HOH B 50 367 114 HOH HOH . G 3 HOH B 51 368 115 HOH HOH . G 3 HOH B 52 369 116 HOH HOH . G 3 HOH B 53 370 120 HOH HOH . G 3 HOH B 54 371 121 HOH HOH . G 3 HOH B 55 372 122 HOH HOH . G 3 HOH B 56 373 123 HOH HOH . G 3 HOH B 57 374 124 HOH HOH . G 3 HOH B 58 375 125 HOH HOH . G 3 HOH B 59 376 126 HOH HOH . G 3 HOH B 60 377 131 HOH HOH . G 3 HOH B 61 378 133 HOH HOH . G 3 HOH B 62 379 134 HOH HOH . G 3 HOH B 63 380 136 HOH HOH . G 3 HOH B 64 381 140 HOH HOH . G 3 HOH B 65 382 141 HOH HOH . G 3 HOH B 66 383 142 HOH HOH . G 3 HOH B 67 384 143 HOH HOH . G 3 HOH B 68 385 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 2 19.457 75.318 37.086 0.33 56.4 ? P PO4 3 B 1 HETATM 2 O O1 PO4 . . . E 2 19.739 76.683 36.608 0.33 56.15 ? O1 PO4 3 B 1 HETATM 3 O O2 PO4 . . . E 2 18.092 75.037 37.565 0.33 44.5 ? O2 PO4 3 B 1 HETATM 4 O O3 PO4 . . . E 2 19.811 74.491 35.922 0.33 64.84 ? O3 PO4 3 B 1 HETATM 5 O O4 PO4 . . . E 2 20.284 74.963 38.25 0.33 65.25 ? O4 PO4 3 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #