data_3LOQ # _model_server_result.job_id 2K_fqmxMb06AAy_GXiUAEw _model_server_result.datetime_utc '2024-11-21 23:10:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3loq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":271}' # _entry.id 3LOQ # _exptl.entry_id 3LOQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LOQ _cell.length_a 72.308 _cell.length_b 89.169 _cell.length_c 137.784 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,R 1 1 B,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 24 A ALA 0 1_555 A N MSE 25 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 25 A MSE 1 1_555 A N LEU 26 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C GLU 79 A GLU 55 1_555 A N MSE 80 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 80 A MSE 56 1_555 A N SER 81 A SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ALA 128 A ALA 104 1_555 A N MSE 129 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 129 A MSE 105 1_555 A N GLY 130 A GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ASP 163 A ASP 139 1_555 A N MSE 164 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 164 A MSE 140 1_555 A N VAL 165 A VAL 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C VAL 218 A VAL 194 1_555 A N MSE 219 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 219 A MSE 195 1_555 A N GLU 220 A GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C PHE 256 A PHE 232 1_555 A N MSE 257 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 257 A MSE 233 1_555 A N GLY 258 A GLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C VAL 265 A VAL 241 1_555 A N MSE 266 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 266 A MSE 242 1_555 A N THR 267 A THR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale15 A C THR 267 A THR 243 1_555 A N MSE 268 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale16 A C MSE 268 A MSE 244 1_555 A N ILE 269 A ILE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 B C ALA 24 B ALA 0 1_555 B N MSE 25 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C MSE 25 B MSE 1 1_555 B N LEU 26 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C GLU 79 B GLU 55 1_555 B N MSE 80 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C MSE 80 B MSE 56 1_555 B N SER 81 B SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 B C ALA 128 B ALA 104 1_555 B N MSE 129 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 129 B MSE 105 1_555 B N GLY 130 B GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C ASP 163 B ASP 139 1_555 B N MSE 164 B MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C MSE 164 B MSE 140 1_555 B N VAL 165 B VAL 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 B C VAL 218 B VAL 194 1_555 B N MSE 219 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale26 B C MSE 219 B MSE 195 1_555 B N GLU 220 B GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C PHE 256 B PHE 232 1_555 B N MSE 257 B MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale28 B C MSE 257 B MSE 233 1_555 B N GLY 258 B GLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale29 B C VAL 265 B VAL 241 1_555 B N MSE 266 B MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale30 B C MSE 266 B MSE 242 1_555 B N THR 267 B THR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale31 B C THR 267 B THR 243 1_555 B N MSE 268 B MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale32 B C MSE 268 B MSE 244 1_555 B N ILE 269 B ILE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 19 n n P O2P AMP sing 20 n n P O3P AMP sing 21 n n P O5' AMP sing 22 n n O2P HOP2 AMP sing 23 n n O3P HOP3 AMP sing 24 n n O5' C5' AMP sing 25 n n C5' C4' AMP sing 26 n n C5' "H5'1" AMP sing 27 n n C5' "H5'2" AMP sing 28 n n C4' O4' AMP sing 29 n n C4' C3' AMP sing 30 n n C4' H4' AMP sing 31 n n O4' C1' AMP sing 32 n n C3' O3' AMP sing 33 n n C3' C2' AMP sing 34 n n C3' H3' AMP sing 35 n n O3' HO3' AMP sing 36 n n C2' O2' AMP sing 37 n n C2' C1' AMP sing 38 n n C2' H2' AMP sing 39 n n O2' HO2' AMP sing 40 n n C1' N9 AMP sing 41 n n C1' H1' AMP sing 42 n n N9 C8 AMP sing 43 n y N9 C4 AMP sing 44 n y C8 N7 AMP doub 45 n y C8 H8 AMP sing 46 n n N7 C5 AMP sing 47 n y C5 C6 AMP sing 48 n y C5 C4 AMP doub 49 n y C6 N6 AMP sing 50 n n C6 N1 AMP doub 51 n y N6 HN61 AMP sing 52 n n N6 HN62 AMP sing 53 n n N1 C2 AMP sing 54 n y C2 N3 AMP doub 55 n y C2 H2 AMP sing 56 n n N3 C4 AMP sing 57 n y # _atom_sites.entry_id 3LOQ _atom_sites.fract_transf_matrix[1][1] 0.01383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 271 1 AMP AMP . D 3 CL A 1 272 1 CL CL . E 3 CL A 1 273 3 CL CL . F 3 CL A 1 274 7 CL CL . G 3 CL A 1 275 8 CL CL . H 4 ACT A 1 276 1 ACT ACT . I 4 ACT A 1 277 2 ACT ACT . J 4 ACT A 1 278 3 ACT ACT . K 4 ACT A 1 279 4 ACT ACT . L 2 AMP B 1 271 2 AMP AMP . M 2 AMP B 1 272 3 AMP AMP . N 3 CL B 1 273 2 CL CL . O 3 CL B 1 274 4 CL CL . P 3 CL B 1 275 5 CL CL . Q 3 CL B 1 276 6 CL CL . R 5 HOH A 1 280 1 HOH HOH . R 5 HOH A 2 281 3 HOH HOH . R 5 HOH A 3 282 4 HOH HOH . R 5 HOH A 4 283 5 HOH HOH . R 5 HOH A 5 284 6 HOH HOH . R 5 HOH A 6 285 7 HOH HOH . R 5 HOH A 7 286 11 HOH HOH . R 5 HOH A 8 287 13 HOH HOH . R 5 HOH A 9 288 14 HOH HOH . R 5 HOH A 10 289 15 HOH HOH . R 5 HOH A 11 290 16 HOH HOH . R 5 HOH A 12 291 18 HOH HOH . R 5 HOH A 13 292 24 HOH HOH . R 5 HOH A 14 293 26 HOH HOH . R 5 HOH A 15 294 29 HOH HOH . R 5 HOH A 16 295 31 HOH HOH . R 5 HOH A 17 296 32 HOH HOH . R 5 HOH A 18 297 33 HOH HOH . R 5 HOH A 19 298 34 HOH HOH . R 5 HOH A 20 299 35 HOH HOH . R 5 HOH A 21 300 37 HOH HOH . R 5 HOH A 22 301 39 HOH HOH . R 5 HOH A 23 302 42 HOH HOH . R 5 HOH A 24 303 44 HOH HOH . R 5 HOH A 25 304 45 HOH HOH . R 5 HOH A 26 305 48 HOH HOH . R 5 HOH A 27 306 50 HOH HOH . R 5 HOH A 28 307 53 HOH HOH . R 5 HOH A 29 308 55 HOH HOH . R 5 HOH A 30 309 56 HOH HOH . R 5 HOH A 31 310 57 HOH HOH . R 5 HOH A 32 311 59 HOH HOH . R 5 HOH A 33 312 60 HOH HOH . R 5 HOH A 34 313 61 HOH HOH . R 5 HOH A 35 314 63 HOH HOH . R 5 HOH A 36 315 64 HOH HOH . R 5 HOH A 37 316 75 HOH HOH . S 5 HOH B 1 277 2 HOH HOH . S 5 HOH B 2 278 8 HOH HOH . S 5 HOH B 3 279 9 HOH HOH . S 5 HOH B 4 280 10 HOH HOH . S 5 HOH B 5 281 12 HOH HOH . S 5 HOH B 6 282 17 HOH HOH . S 5 HOH B 7 283 19 HOH HOH . S 5 HOH B 8 284 20 HOH HOH . S 5 HOH B 9 285 21 HOH HOH . S 5 HOH B 10 286 22 HOH HOH . S 5 HOH B 11 287 23 HOH HOH . S 5 HOH B 12 288 25 HOH HOH . S 5 HOH B 13 289 27 HOH HOH . S 5 HOH B 14 290 28 HOH HOH . S 5 HOH B 15 291 30 HOH HOH . S 5 HOH B 16 292 36 HOH HOH . S 5 HOH B 17 293 38 HOH HOH . S 5 HOH B 18 294 40 HOH HOH . S 5 HOH B 19 295 41 HOH HOH . S 5 HOH B 20 296 43 HOH HOH . S 5 HOH B 21 297 46 HOH HOH . S 5 HOH B 22 298 47 HOH HOH . S 5 HOH B 23 299 49 HOH HOH . S 5 HOH B 24 300 51 HOH HOH . S 5 HOH B 25 301 52 HOH HOH . S 5 HOH B 26 302 54 HOH HOH . S 5 HOH B 27 303 58 HOH HOH . S 5 HOH B 28 304 62 HOH HOH . S 5 HOH B 29 305 65 HOH HOH . S 5 HOH B 30 306 66 HOH HOH . S 5 HOH B 31 307 67 HOH HOH . S 5 HOH B 32 308 68 HOH HOH . S 5 HOH B 33 309 69 HOH HOH . S 5 HOH B 34 310 70 HOH HOH . S 5 HOH B 35 311 71 HOH HOH . S 5 HOH B 36 312 72 HOH HOH . S 5 HOH B 37 313 73 HOH HOH . S 5 HOH B 38 314 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 60.771 62.923 22.524 1 38.57 ? P AMP 271 A 1 HETATM 2 O O1P AMP . . . C 2 61.657 62.391 23.621 1 42 ? O1P AMP 271 A 1 HETATM 3 O O2P AMP . . . C 2 59.774 63.997 22.919 1 44.35 ? O2P AMP 271 A 1 HETATM 4 O O3P AMP . . . C 2 61.517 63.213 21.243 1 43.75 ? O3P AMP 271 A 1 HETATM 5 O O5' AMP . . . C 2 59.828 61.663 22.166 1 39.07 ? O5' AMP 271 A 1 HETATM 6 C C5' AMP . . . C 2 58.92 61.783 21.075 1 28.68 ? C5' AMP 271 A 1 HETATM 7 C C4' AMP . . . C 2 57.831 60.769 21.304 1 34.28 ? C4' AMP 271 A 1 HETATM 8 O O4' AMP . . . C 2 57.001 61.182 22.391 1 41.89 ? O4' AMP 271 A 1 HETATM 9 C C3' AMP . . . C 2 56.879 60.707 20.139 1 42.36 ? C3' AMP 271 A 1 HETATM 10 O O3' AMP . . . C 2 57.381 59.792 19.186 1 39.83 ? O3' AMP 271 A 1 HETATM 11 C C2' AMP . . . C 2 55.626 60.171 20.782 1 43.31 ? C2' AMP 271 A 1 HETATM 12 O O2' AMP . . . C 2 55.798 58.76 20.897 1 46.86 ? O2' AMP 271 A 1 HETATM 13 C C1' AMP . . . C 2 55.65 60.769 22.172 1 36.93 ? C1' AMP 271 A 1 HETATM 14 N N9 AMP . . . C 2 54.785 61.968 22.17 1 38.89 ? N9 AMP 271 A 1 HETATM 15 C C8 AMP . . . C 2 55.217 63.243 22.114 1 39.11 ? C8 AMP 271 A 1 HETATM 16 N N7 AMP . . . C 2 54.172 64.111 22.123 1 39.39 ? N7 AMP 271 A 1 HETATM 17 C C5 AMP . . . C 2 53.042 63.374 22.183 1 36.9 ? C5 AMP 271 A 1 HETATM 18 C C6 AMP . . . C 2 51.597 63.652 22.222 1 34.12 ? C6 AMP 271 A 1 HETATM 19 N N6 AMP . . . C 2 51.14 64.922 22.204 1 39.51 ? N6 AMP 271 A 1 HETATM 20 N N1 AMP . . . C 2 50.755 62.607 22.284 1 37.12 ? N1 AMP 271 A 1 HETATM 21 C C2 AMP . . . C 2 51.197 61.337 22.311 1 40.63 ? C2 AMP 271 A 1 HETATM 22 N N3 AMP . . . C 2 52.494 61.01 22.282 1 38.95 ? N3 AMP 271 A 1 HETATM 23 C C4 AMP . . . C 2 53.448 61.968 22.225 1 38.33 ? C4 AMP 271 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #