data_3LOQ
#
_model_server_result.job_id            gZyX8vUsqkX6VNDHPo03IA 
_model_server_result.datetime_utc      '2024-11-21 22:52:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3loq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":271}' 
#
_entry.id    3LOQ 
#
_exptl.entry_id    3LOQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LOQ 
_cell.length_a            72.308 
_cell.length_b            89.169 
_cell.length_c            137.784 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,R 1 1 
B,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 24 A ALA 0 1_555 A N MSE 25 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 25 A MSE 1 1_555 A N LEU 26 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C GLU 79 A GLU 55 1_555 A N MSE 80 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 80 A MSE 56 1_555 A N SER 81 A SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C ALA 128 A ALA 104 1_555 A N MSE 129 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MSE 129 A MSE 105 1_555 A N GLY 130 A GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C ASP 163 A ASP 139 1_555 A N MSE 164 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C MSE 164 A MSE 140 1_555 A N VAL 165 A VAL 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 A C VAL 218 A VAL 194 1_555 A N MSE 219 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 219 A MSE 195 1_555 A N GLU 220 A GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 A C PHE 256 A PHE 232 1_555 A N MSE 257 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 A C MSE 257 A MSE 233 1_555 A N GLY 258 A GLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C VAL 265 A VAL 241 1_555 A N MSE 266 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C MSE 266 A MSE 242 1_555 A N THR 267 A THR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale15 A C THR 267 A THR 243 1_555 A N MSE 268 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale16 A C MSE 268 A MSE 244 1_555 A N ILE 269 A ILE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 B C ALA 24 B ALA 0 1_555 B N MSE 25 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale18 B C MSE 25 B MSE 1 1_555 B N LEU 26 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 B C GLU 79 B GLU 55 1_555 B N MSE 80 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale20 B C MSE 80 B MSE 56 1_555 B N SER 81 B SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale21 B C ALA 128 B ALA 104 1_555 B N MSE 129 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale22 B C MSE 129 B MSE 105 1_555 B N GLY 130 B GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale23 B C ASP 163 B ASP 139 1_555 B N MSE 164 B MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale24 B C MSE 164 B MSE 140 1_555 B N VAL 165 B VAL 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale25 B C VAL 218 B VAL 194 1_555 B N MSE 219 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale26 B C MSE 219 B MSE 195 1_555 B N GLU 220 B GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale27 B C PHE 256 B PHE 232 1_555 B N MSE 257 B MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale28 B C MSE 257 B MSE 233 1_555 B N GLY 258 B GLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale29 B C VAL 265 B VAL 241 1_555 B N MSE 266 B MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale30 B C MSE 266 B MSE 242 1_555 B N THR 267 B THR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale31 B C THR 267 B THR 243 1_555 B N MSE 268 B MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale32 B C MSE 268 B MSE 244 1_555 B N ILE 269 B ILE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 19 n n 
P O2P AMP sing 20 n n 
P O3P AMP sing 21 n n 
P O5' AMP sing 22 n n 
O2P HOP2 AMP sing 23 n n 
O3P HOP3 AMP sing 24 n n 
O5' C5' AMP sing 25 n n 
C5' C4' AMP sing 26 n n 
C5' "H5'1" AMP sing 27 n n 
C5' "H5'2" AMP sing 28 n n 
C4' O4' AMP sing 29 n n 
C4' C3' AMP sing 30 n n 
C4' H4' AMP sing 31 n n 
O4' C1' AMP sing 32 n n 
C3' O3' AMP sing 33 n n 
C3' C2' AMP sing 34 n n 
C3' H3' AMP sing 35 n n 
O3' HO3' AMP sing 36 n n 
C2' O2' AMP sing 37 n n 
C2' C1' AMP sing 38 n n 
C2' H2' AMP sing 39 n n 
O2' HO2' AMP sing 40 n n 
C1' N9 AMP sing 41 n n 
C1' H1' AMP sing 42 n n 
N9 C8 AMP sing 43 n y 
N9 C4 AMP sing 44 n y 
C8 N7 AMP doub 45 n y 
C8 H8 AMP sing 46 n n 
N7 C5 AMP sing 47 n y 
C5 C6 AMP sing 48 n y 
C5 C4 AMP doub 49 n y 
C6 N6 AMP sing 50 n n 
C6 N1 AMP doub 51 n y 
N6 HN61 AMP sing 52 n n 
N6 HN62 AMP sing 53 n n 
N1 C2 AMP sing 54 n y 
C2 N3 AMP doub 55 n y 
C2 H2 AMP sing 56 n n 
N3 C4 AMP sing 57 n y 
#
_atom_sites.entry_id                     3LOQ 
_atom_sites.fract_transf_matrix[1][1]    0.01383 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 271 1 AMP AMP . 
D 3 CL A 1 272 1 CL CL . 
E 3 CL A 1 273 3 CL CL . 
F 3 CL A 1 274 7 CL CL . 
G 3 CL A 1 275 8 CL CL . 
H 4 ACT A 1 276 1 ACT ACT . 
I 4 ACT A 1 277 2 ACT ACT . 
J 4 ACT A 1 278 3 ACT ACT . 
K 4 ACT A 1 279 4 ACT ACT . 
L 2 AMP B 1 271 2 AMP AMP . 
M 2 AMP B 1 272 3 AMP AMP . 
N 3 CL B 1 273 2 CL CL . 
O 3 CL B 1 274 4 CL CL . 
P 3 CL B 1 275 5 CL CL . 
Q 3 CL B 1 276 6 CL CL . 
R 5 HOH A 1 280 1 HOH HOH . 
R 5 HOH A 2 281 3 HOH HOH . 
R 5 HOH A 3 282 4 HOH HOH . 
R 5 HOH A 4 283 5 HOH HOH . 
R 5 HOH A 5 284 6 HOH HOH . 
R 5 HOH A 6 285 7 HOH HOH . 
R 5 HOH A 7 286 11 HOH HOH . 
R 5 HOH A 8 287 13 HOH HOH . 
R 5 HOH A 9 288 14 HOH HOH . 
R 5 HOH A 10 289 15 HOH HOH . 
R 5 HOH A 11 290 16 HOH HOH . 
R 5 HOH A 12 291 18 HOH HOH . 
R 5 HOH A 13 292 24 HOH HOH . 
R 5 HOH A 14 293 26 HOH HOH . 
R 5 HOH A 15 294 29 HOH HOH . 
R 5 HOH A 16 295 31 HOH HOH . 
R 5 HOH A 17 296 32 HOH HOH . 
R 5 HOH A 18 297 33 HOH HOH . 
R 5 HOH A 19 298 34 HOH HOH . 
R 5 HOH A 20 299 35 HOH HOH . 
R 5 HOH A 21 300 37 HOH HOH . 
R 5 HOH A 22 301 39 HOH HOH . 
R 5 HOH A 23 302 42 HOH HOH . 
R 5 HOH A 24 303 44 HOH HOH . 
R 5 HOH A 25 304 45 HOH HOH . 
R 5 HOH A 26 305 48 HOH HOH . 
R 5 HOH A 27 306 50 HOH HOH . 
R 5 HOH A 28 307 53 HOH HOH . 
R 5 HOH A 29 308 55 HOH HOH . 
R 5 HOH A 30 309 56 HOH HOH . 
R 5 HOH A 31 310 57 HOH HOH . 
R 5 HOH A 32 311 59 HOH HOH . 
R 5 HOH A 33 312 60 HOH HOH . 
R 5 HOH A 34 313 61 HOH HOH . 
R 5 HOH A 35 314 63 HOH HOH . 
R 5 HOH A 36 315 64 HOH HOH . 
R 5 HOH A 37 316 75 HOH HOH . 
S 5 HOH B 1 277 2 HOH HOH . 
S 5 HOH B 2 278 8 HOH HOH . 
S 5 HOH B 3 279 9 HOH HOH . 
S 5 HOH B 4 280 10 HOH HOH . 
S 5 HOH B 5 281 12 HOH HOH . 
S 5 HOH B 6 282 17 HOH HOH . 
S 5 HOH B 7 283 19 HOH HOH . 
S 5 HOH B 8 284 20 HOH HOH . 
S 5 HOH B 9 285 21 HOH HOH . 
S 5 HOH B 10 286 22 HOH HOH . 
S 5 HOH B 11 287 23 HOH HOH . 
S 5 HOH B 12 288 25 HOH HOH . 
S 5 HOH B 13 289 27 HOH HOH . 
S 5 HOH B 14 290 28 HOH HOH . 
S 5 HOH B 15 291 30 HOH HOH . 
S 5 HOH B 16 292 36 HOH HOH . 
S 5 HOH B 17 293 38 HOH HOH . 
S 5 HOH B 18 294 40 HOH HOH . 
S 5 HOH B 19 295 41 HOH HOH . 
S 5 HOH B 20 296 43 HOH HOH . 
S 5 HOH B 21 297 46 HOH HOH . 
S 5 HOH B 22 298 47 HOH HOH . 
S 5 HOH B 23 299 49 HOH HOH . 
S 5 HOH B 24 300 51 HOH HOH . 
S 5 HOH B 25 301 52 HOH HOH . 
S 5 HOH B 26 302 54 HOH HOH . 
S 5 HOH B 27 303 58 HOH HOH . 
S 5 HOH B 28 304 62 HOH HOH . 
S 5 HOH B 29 305 65 HOH HOH . 
S 5 HOH B 30 306 66 HOH HOH . 
S 5 HOH B 31 307 67 HOH HOH . 
S 5 HOH B 32 308 68 HOH HOH . 
S 5 HOH B 33 309 69 HOH HOH . 
S 5 HOH B 34 310 70 HOH HOH . 
S 5 HOH B 35 311 71 HOH HOH . 
S 5 HOH B 36 312 72 HOH HOH . 
S 5 HOH B 37 313 73 HOH HOH . 
S 5 HOH B 38 314 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . L 2 89.309 66.858 -7.061 1 64.46 ? P AMP 271 B 1 
HETATM 2 O O1P AMP . . . L 2 87.86 67.176 -6.767 1 53.8 ? O1P AMP 271 B 1 
HETATM 3 O O2P AMP . . . L 2 89.582 66.222 -8.406 1 62.4 ? O2P AMP 271 B 1 
HETATM 4 O O3P AMP . . . L 2 90.252 67.986 -6.701 1 75.35 ? O3P AMP 271 B 1 
HETATM 5 O O5' AMP . . . L 2 89.699 65.716 -5.987 1 50.8 ? O5' AMP 271 B 1 
HETATM 6 C C5' AMP . . . L 2 89.621 66.024 -4.591 1 44.28 ? C5' AMP 271 B 1 
HETATM 7 C C4' AMP . . . L 2 90.12 64.881 -3.72 1 38.3 ? C4' AMP 271 B 1 
HETATM 8 O O4' AMP . . . L 2 89.273 63.73 -3.77 1 45.52 ? O4' AMP 271 B 1 
HETATM 9 C C3' AMP . . . L 2 91.48 64.349 -4.118 1 39.29 ? C3' AMP 271 B 1 
HETATM 10 O O3' AMP . . . L 2 92.486 65.196 -3.58 1 41.42 ? O3' AMP 271 B 1 
HETATM 11 C C2' AMP . . . L 2 91.468 62.984 -3.466 1 37.98 ? C2' AMP 271 B 1 
HETATM 12 O O2' AMP . . . L 2 91.701 63.16 -2.064 1 42.76 ? O2' AMP 271 B 1 
HETATM 13 C C1' AMP . . . L 2 90.041 62.529 -3.649 1 38.41 ? C1' AMP 271 B 1 
HETATM 14 N N9 AMP . . . L 2 90.02 61.766 -4.924 1 47.56 ? N9 AMP 271 B 1 
HETATM 15 C C8 AMP . . . L 2 89.958 62.295 -6.167 1 46.71 ? C8 AMP 271 B 1 
HETATM 16 N N7 AMP . . . L 2 89.98 61.323 -7.115 1 46.68 ? N7 AMP 271 B 1 
HETATM 17 C C5 AMP . . . L 2 90.063 60.143 -6.471 1 45.48 ? C5 AMP 271 B 1 
HETATM 18 C C6 AMP . . . L 2 90.127 58.725 -6.877 1 46.81 ? C6 AMP 271 B 1 
HETATM 19 N N6 AMP . . . L 2 90.11 58.388 -8.188 1 51.55 ? N6 AMP 271 B 1 
HETATM 20 N N1 AMP . . . L 2 90.207 57.795 -5.895 1 46.69 ? N1 AMP 271 B 1 
HETATM 21 C C2 AMP . . . L 2 90.223 58.142 -4.59 1 43.85 ? C2 AMP 271 B 1 
HETATM 22 N N3 AMP . . . L 2 90.173 59.418 -4.15 1 37.23 ? N3 AMP 271 B 1 
HETATM 23 C C4 AMP . . . L 2 90.085 60.437 -5.031 1 39.85 ? C4 AMP 271 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#