data_3LP0 # _model_server_result.job_id GGip0NASMy9O_TkwkuRgUA _model_server_result.datetime_utc '2024-11-22 03:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 3LP0 # _exptl.entry_id 3LP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LP0 _cell.length_a 118.299 _cell.length_b 154.184 _cell.length_c 153.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 76.584 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 446 A ASP 443 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OD2 ASP 446 A ASP 443 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A OE2 GLU 481 A GLU 478 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A OD2 ASP 501 A ASP 498 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 A OD1 ASP 501 A ASP 498 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc6 A OD1 ASP 552 A ASP 549 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc7 E O9 LP7 . A LP7 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc8 E N LP7 . A LP7 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LP0 _atom_sites.fract_transf_matrix[1][1] 0.008453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 602 602 MN MN . D 3 MN A 1 603 603 MN MN . E 4 LP7 A 1 601 601 LP7 LP7 . F 5 NVP A 1 701 701 NVP NVP . G 6 HOH A 1 561 2 HOH HOH . G 6 HOH A 2 562 4 HOH HOH . G 6 HOH A 3 563 5 HOH HOH . G 6 HOH A 4 564 6 HOH HOH . G 6 HOH A 5 565 9 HOH HOH . G 6 HOH A 6 566 11 HOH HOH . G 6 HOH A 7 567 12 HOH HOH . G 6 HOH A 8 568 15 HOH HOH . G 6 HOH A 9 569 17 HOH HOH . G 6 HOH A 10 570 18 HOH HOH . G 6 HOH A 11 571 19 HOH HOH . G 6 HOH A 12 572 20 HOH HOH . G 6 HOH A 13 573 21 HOH HOH . G 6 HOH A 14 574 23 HOH HOH . G 6 HOH A 15 575 24 HOH HOH . G 6 HOH A 16 576 29 HOH HOH . G 6 HOH A 17 577 31 HOH HOH . G 6 HOH A 18 578 32 HOH HOH . G 6 HOH A 19 579 34 HOH HOH . G 6 HOH A 20 580 35 HOH HOH . G 6 HOH A 21 581 36 HOH HOH . G 6 HOH A 22 582 38 HOH HOH . G 6 HOH A 23 583 39 HOH HOH . G 6 HOH A 24 584 42 HOH HOH . G 6 HOH A 25 585 43 HOH HOH . G 6 HOH A 26 586 45 HOH HOH . G 6 HOH A 27 587 47 HOH HOH . G 6 HOH A 28 588 48 HOH HOH . G 6 HOH A 29 589 49 HOH HOH . G 6 HOH A 30 590 51 HOH HOH . G 6 HOH A 31 591 52 HOH HOH . H 6 HOH B 1 441 1 HOH HOH . H 6 HOH B 2 442 3 HOH HOH . H 6 HOH B 3 443 7 HOH HOH . H 6 HOH B 4 444 8 HOH HOH . H 6 HOH B 5 445 10 HOH HOH . H 6 HOH B 6 446 13 HOH HOH . H 6 HOH B 7 447 14 HOH HOH . H 6 HOH B 8 448 16 HOH HOH . H 6 HOH B 9 449 22 HOH HOH . H 6 HOH B 10 450 25 HOH HOH . H 6 HOH B 11 451 26 HOH HOH . H 6 HOH B 12 452 27 HOH HOH . H 6 HOH B 13 453 28 HOH HOH . H 6 HOH B 14 454 30 HOH HOH . H 6 HOH B 15 455 33 HOH HOH . H 6 HOH B 16 456 37 HOH HOH . H 6 HOH B 17 457 40 HOH HOH . H 6 HOH B 18 458 41 HOH HOH . H 6 HOH B 19 459 44 HOH HOH . H 6 HOH B 20 460 46 HOH HOH . H 6 HOH B 21 461 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.263 _atom_site.Cartn_y 71.751 _atom_site.Cartn_z 31.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #