data_3LP0 # _model_server_result.job_id BI1FyL5e2XhLDrb4q0c1mA _model_server_result.datetime_utc '2024-11-22 03:39:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 3LP0 # _exptl.entry_id 3LP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LP0 _cell.length_a 118.299 _cell.length_b 154.184 _cell.length_c 153.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 76.584 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 446 A ASP 443 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OD2 ASP 446 A ASP 443 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A OE2 GLU 481 A GLU 478 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A OD2 ASP 501 A ASP 498 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 A OD1 ASP 501 A ASP 498 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc6 A OD1 ASP 552 A ASP 549 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc7 E O9 LP7 . A LP7 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc8 E N LP7 . A LP7 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 268 n n N1 C2 NVP sing 269 n n N1 C15 NVP sing 270 n n CA CB NVP sing 271 n n CA CC NVP sing 272 n n CA HCA NVP sing 273 n n CB CC NVP sing 274 n n CB HCB1 NVP sing 275 n n CB HCB2 NVP sing 276 n n CC HCC1 NVP sing 277 n n CC HCC2 NVP sing 278 n n N3 C4 NVP doub 279 n y N3 C2 NVP sing 280 n y C4 C5 NVP sing 281 n y C4 HC4 NVP sing 282 n n C5 C6 NVP doub 283 n y C5 HC5 NVP sing 284 n n C6 CD NVP sing 285 n n C6 C7 NVP sing 286 n y CD HCD1 NVP sing 287 n n CD HCD2 NVP sing 288 n n CD HCD3 NVP sing 289 n n C2 C7 NVP doub 290 n y C7 N8 NVP sing 291 n n N8 C9 NVP sing 292 n n N8 HN8 NVP sing 293 n n C9 OE NVP doub 294 n n C9 C10 NVP sing 295 n n C10 C15 NVP doub 296 n y C10 C11 NVP sing 297 n y C15 N14 NVP sing 298 n y C11 C12 NVP doub 299 n y C11 H11 NVP sing 300 n n C12 C13 NVP sing 301 n y C12 H12 NVP sing 302 n n C13 N14 NVP doub 303 n y C13 H13 NVP sing 304 n n # _atom_sites.entry_id 3LP0 _atom_sites.fract_transf_matrix[1][1] 0.008453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 602 602 MN MN . D 3 MN A 1 603 603 MN MN . E 4 LP7 A 1 601 601 LP7 LP7 . F 5 NVP A 1 701 701 NVP NVP . G 6 HOH A 1 561 2 HOH HOH . G 6 HOH A 2 562 4 HOH HOH . G 6 HOH A 3 563 5 HOH HOH . G 6 HOH A 4 564 6 HOH HOH . G 6 HOH A 5 565 9 HOH HOH . G 6 HOH A 6 566 11 HOH HOH . G 6 HOH A 7 567 12 HOH HOH . G 6 HOH A 8 568 15 HOH HOH . G 6 HOH A 9 569 17 HOH HOH . G 6 HOH A 10 570 18 HOH HOH . G 6 HOH A 11 571 19 HOH HOH . G 6 HOH A 12 572 20 HOH HOH . G 6 HOH A 13 573 21 HOH HOH . G 6 HOH A 14 574 23 HOH HOH . G 6 HOH A 15 575 24 HOH HOH . G 6 HOH A 16 576 29 HOH HOH . G 6 HOH A 17 577 31 HOH HOH . G 6 HOH A 18 578 32 HOH HOH . G 6 HOH A 19 579 34 HOH HOH . G 6 HOH A 20 580 35 HOH HOH . G 6 HOH A 21 581 36 HOH HOH . G 6 HOH A 22 582 38 HOH HOH . G 6 HOH A 23 583 39 HOH HOH . G 6 HOH A 24 584 42 HOH HOH . G 6 HOH A 25 585 43 HOH HOH . G 6 HOH A 26 586 45 HOH HOH . G 6 HOH A 27 587 47 HOH HOH . G 6 HOH A 28 588 48 HOH HOH . G 6 HOH A 29 589 49 HOH HOH . G 6 HOH A 30 590 51 HOH HOH . G 6 HOH A 31 591 52 HOH HOH . H 6 HOH B 1 441 1 HOH HOH . H 6 HOH B 2 442 3 HOH HOH . H 6 HOH B 3 443 7 HOH HOH . H 6 HOH B 4 444 8 HOH HOH . H 6 HOH B 5 445 10 HOH HOH . H 6 HOH B 6 446 13 HOH HOH . H 6 HOH B 7 447 14 HOH HOH . H 6 HOH B 8 448 16 HOH HOH . H 6 HOH B 9 449 22 HOH HOH . H 6 HOH B 10 450 25 HOH HOH . H 6 HOH B 11 451 26 HOH HOH . H 6 HOH B 12 452 27 HOH HOH . H 6 HOH B 13 453 28 HOH HOH . H 6 HOH B 14 454 30 HOH HOH . H 6 HOH B 15 455 33 HOH HOH . H 6 HOH B 16 456 37 HOH HOH . H 6 HOH B 17 457 40 HOH HOH . H 6 HOH B 18 458 41 HOH HOH . H 6 HOH B 19 459 44 HOH HOH . H 6 HOH B 20 460 46 HOH HOH . H 6 HOH B 21 461 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . F 5 10.94 13.585 16.341 1 57.96 ? N1 NVP 701 A 1 HETATM 2 C CA NVP . . . F 5 11.97 13.631 15.296 1 58.11 ? CA NVP 701 A 1 HETATM 3 C CB NVP . . . F 5 13.402 13.248 15.688 1 58.26 ? CB NVP 701 A 1 HETATM 4 C CC NVP . . . F 5 12.541 12.277 14.873 1 58.29 ? CC NVP 701 A 1 HETATM 5 N N3 NVP . . . F 5 11.73 15.645 17.247 1 57.22 ? N3 NVP 701 A 1 HETATM 6 C C4 NVP . . . F 5 11.788 16.473 18.336 1 56.51 ? C4 NVP 701 A 1 HETATM 7 C C5 NVP . . . F 5 11.145 16.185 19.542 1 55.08 ? C5 NVP 701 A 1 HETATM 8 C C6 NVP . . . F 5 10.709 14.88 19.757 1 55.41 ? C6 NVP 701 A 1 HETATM 9 C CD NVP . . . F 5 10.367 14.441 21.163 1 54.62 ? CD NVP 701 A 1 HETATM 10 C C2 NVP . . . F 5 11.126 14.422 17.413 1 57.45 ? C2 NVP 701 A 1 HETATM 11 C C7 NVP . . . F 5 10.691 13.983 18.68 1 56.5 ? C7 NVP 701 A 1 HETATM 12 N N8 NVP . . . F 5 10.06 12.785 18.785 1 57.34 ? N8 NVP 701 A 1 HETATM 13 C C9 NVP . . . F 5 9.053 12.19 18.087 1 57.29 ? C9 NVP 701 A 1 HETATM 14 O OE NVP . . . F 5 8.322 11.409 18.688 1 57.27 ? OE NVP 701 A 1 HETATM 15 C C10 NVP . . . F 5 8.856 12.412 16.709 1 57.26 ? C10 NVP 701 A 1 HETATM 16 C C15 NVP . . . F 5 9.66 13.292 15.935 1 57.77 ? C15 NVP 701 A 1 HETATM 17 C C11 NVP . . . F 5 7.631 12.022 16.154 1 57.23 ? C11 NVP 701 A 1 HETATM 18 C C12 NVP . . . F 5 7.184 12.558 14.943 1 57.36 ? C12 NVP 701 A 1 HETATM 19 C C13 NVP . . . F 5 8.094 13.275 14.157 1 57.79 ? C13 NVP 701 A 1 HETATM 20 N N14 NVP . . . F 5 9.355 13.565 14.616 1 57.86 ? N14 NVP 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #