data_3LP1 # _model_server_result.job_id mF3KvlSpQLUqItOPalS1yg _model_server_result.datetime_utc '2024-11-14 17:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3LP1 # _exptl.entry_id 3LP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LP1 _cell.length_a 118.784 _cell.length_b 155.264 _cell.length_c 155.244 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 77.622 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 446 A ASP 443 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OD2 ASP 446 A ASP 443 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 A OE2 GLU 481 A GLU 478 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 A OD1 ASP 501 A ASP 498 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A OD1 ASP 552 A ASP 549 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C O LP8 . A LP8 601 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 C O3 LP8 . A LP8 601 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc8 C O LP8 . A LP8 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 C N9 LP8 . A LP8 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LP1 _atom_sites.fract_transf_matrix[1][1] 0.008419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LP8 A 1 601 601 LP8 LP8 . D 4 MN A 1 602 602 MN MN . E 4 MN A 1 603 603 MN MN . F 5 NVP A 1 701 701 NVP NVP . G 6 HOH A 1 561 2 HOH HOH . G 6 HOH A 2 562 3 HOH HOH . G 6 HOH A 3 563 5 HOH HOH . G 6 HOH A 4 564 6 HOH HOH . G 6 HOH A 5 565 7 HOH HOH . G 6 HOH A 6 566 8 HOH HOH . G 6 HOH A 7 567 9 HOH HOH . G 6 HOH A 8 568 10 HOH HOH . G 6 HOH A 9 569 11 HOH HOH . G 6 HOH A 10 570 13 HOH HOH . G 6 HOH A 11 571 14 HOH HOH . G 6 HOH A 12 572 15 HOH HOH . G 6 HOH A 13 573 16 HOH HOH . G 6 HOH A 14 574 17 HOH HOH . G 6 HOH A 15 575 19 HOH HOH . G 6 HOH A 16 576 22 HOH HOH . G 6 HOH A 17 577 24 HOH HOH . G 6 HOH A 18 578 25 HOH HOH . G 6 HOH A 19 579 26 HOH HOH . G 6 HOH A 20 580 29 HOH HOH . G 6 HOH A 21 581 31 HOH HOH . G 6 HOH A 22 582 32 HOH HOH . G 6 HOH A 23 583 36 HOH HOH . G 6 HOH A 24 584 37 HOH HOH . G 6 HOH A 25 585 38 HOH HOH . G 6 HOH A 26 586 41 HOH HOH . G 6 HOH A 27 587 43 HOH HOH . G 6 HOH A 28 588 44 HOH HOH . G 6 HOH A 29 589 45 HOH HOH . G 6 HOH A 30 590 46 HOH HOH . G 6 HOH A 31 591 49 HOH HOH . G 6 HOH A 32 592 50 HOH HOH . G 6 HOH A 33 593 51 HOH HOH . G 6 HOH A 34 594 52 HOH HOH . G 6 HOH A 35 595 53 HOH HOH . G 6 HOH A 36 596 57 HOH HOH . G 6 HOH A 37 597 63 HOH HOH . G 6 HOH A 38 598 64 HOH HOH . G 6 HOH A 39 599 67 HOH HOH . G 6 HOH A 40 600 72 HOH HOH . G 6 HOH A 41 604 73 HOH HOH . G 6 HOH A 42 605 76 HOH HOH . G 6 HOH A 43 606 77 HOH HOH . G 6 HOH A 44 607 80 HOH HOH . G 6 HOH A 45 608 81 HOH HOH . G 6 HOH A 46 609 82 HOH HOH . G 6 HOH A 47 610 84 HOH HOH . G 6 HOH A 48 611 86 HOH HOH . G 6 HOH A 49 612 87 HOH HOH . G 6 HOH A 50 613 88 HOH HOH . G 6 HOH A 51 614 90 HOH HOH . G 6 HOH A 52 615 92 HOH HOH . G 6 HOH A 53 616 93 HOH HOH . G 6 HOH A 54 617 97 HOH HOH . G 6 HOH A 55 618 98 HOH HOH . G 6 HOH A 56 619 100 HOH HOH . G 6 HOH A 57 620 102 HOH HOH . G 6 HOH A 58 621 103 HOH HOH . G 6 HOH A 59 622 104 HOH HOH . G 6 HOH A 60 623 105 HOH HOH . G 6 HOH A 61 624 106 HOH HOH . G 6 HOH A 62 625 107 HOH HOH . G 6 HOH A 63 626 108 HOH HOH . G 6 HOH A 64 627 109 HOH HOH . G 6 HOH A 65 628 111 HOH HOH . G 6 HOH A 66 629 113 HOH HOH . G 6 HOH A 67 630 114 HOH HOH . G 6 HOH A 68 631 115 HOH HOH . G 6 HOH A 69 632 116 HOH HOH . G 6 HOH A 70 633 117 HOH HOH . G 6 HOH A 71 634 118 HOH HOH . G 6 HOH A 72 635 120 HOH HOH . G 6 HOH A 73 636 121 HOH HOH . G 6 HOH A 74 637 123 HOH HOH . G 6 HOH A 75 638 124 HOH HOH . G 6 HOH A 76 639 125 HOH HOH . G 6 HOH A 77 640 127 HOH HOH . G 6 HOH A 78 641 129 HOH HOH . G 6 HOH A 79 642 130 HOH HOH . G 6 HOH A 80 643 133 HOH HOH . G 6 HOH A 81 644 134 HOH HOH . G 6 HOH A 82 645 135 HOH HOH . G 6 HOH A 83 646 136 HOH HOH . G 6 HOH A 84 647 139 HOH HOH . G 6 HOH A 85 648 141 HOH HOH . G 6 HOH A 86 649 142 HOH HOH . G 6 HOH A 87 650 145 HOH HOH . G 6 HOH A 88 651 146 HOH HOH . G 6 HOH A 89 652 147 HOH HOH . G 6 HOH A 90 653 149 HOH HOH . G 6 HOH A 91 654 151 HOH HOH . G 6 HOH A 92 655 152 HOH HOH . G 6 HOH A 93 656 157 HOH HOH . G 6 HOH A 94 657 158 HOH HOH . G 6 HOH A 95 658 160 HOH HOH . G 6 HOH A 96 659 161 HOH HOH . G 6 HOH A 97 660 164 HOH HOH . G 6 HOH A 98 661 166 HOH HOH . G 6 HOH A 99 662 167 HOH HOH . G 6 HOH A 100 663 168 HOH HOH . G 6 HOH A 101 664 169 HOH HOH . G 6 HOH A 102 665 170 HOH HOH . G 6 HOH A 103 666 171 HOH HOH . G 6 HOH A 104 667 172 HOH HOH . G 6 HOH A 105 668 173 HOH HOH . G 6 HOH A 106 669 174 HOH HOH . G 6 HOH A 107 670 175 HOH HOH . G 6 HOH A 108 671 150 HOH HOH . H 6 HOH B 1 441 1 HOH HOH . H 6 HOH B 2 442 4 HOH HOH . H 6 HOH B 3 443 12 HOH HOH . H 6 HOH B 4 444 18 HOH HOH . H 6 HOH B 5 445 20 HOH HOH . H 6 HOH B 6 446 21 HOH HOH . H 6 HOH B 7 447 23 HOH HOH . H 6 HOH B 8 448 27 HOH HOH . H 6 HOH B 9 449 28 HOH HOH . H 6 HOH B 10 450 30 HOH HOH . H 6 HOH B 11 451 33 HOH HOH . H 6 HOH B 12 452 34 HOH HOH . H 6 HOH B 13 453 35 HOH HOH . H 6 HOH B 14 454 39 HOH HOH . H 6 HOH B 15 455 40 HOH HOH . H 6 HOH B 16 456 42 HOH HOH . H 6 HOH B 17 457 47 HOH HOH . H 6 HOH B 18 458 48 HOH HOH . H 6 HOH B 19 459 54 HOH HOH . H 6 HOH B 20 460 55 HOH HOH . H 6 HOH B 21 461 56 HOH HOH . H 6 HOH B 22 462 58 HOH HOH . H 6 HOH B 23 463 59 HOH HOH . H 6 HOH B 24 464 60 HOH HOH . H 6 HOH B 25 465 61 HOH HOH . H 6 HOH B 26 466 62 HOH HOH . H 6 HOH B 27 467 65 HOH HOH . H 6 HOH B 28 468 66 HOH HOH . H 6 HOH B 29 469 68 HOH HOH . H 6 HOH B 30 470 69 HOH HOH . H 6 HOH B 31 471 70 HOH HOH . H 6 HOH B 32 472 71 HOH HOH . H 6 HOH B 33 473 74 HOH HOH . H 6 HOH B 34 474 75 HOH HOH . H 6 HOH B 35 475 78 HOH HOH . H 6 HOH B 36 476 79 HOH HOH . H 6 HOH B 37 477 83 HOH HOH . H 6 HOH B 38 478 85 HOH HOH . H 6 HOH B 39 479 89 HOH HOH . H 6 HOH B 40 480 91 HOH HOH . H 6 HOH B 41 481 94 HOH HOH . H 6 HOH B 42 482 95 HOH HOH . H 6 HOH B 43 483 96 HOH HOH . H 6 HOH B 44 484 99 HOH HOH . H 6 HOH B 45 485 101 HOH HOH . H 6 HOH B 46 486 110 HOH HOH . H 6 HOH B 47 487 112 HOH HOH . H 6 HOH B 48 488 119 HOH HOH . H 6 HOH B 49 489 122 HOH HOH . H 6 HOH B 50 490 126 HOH HOH . H 6 HOH B 51 491 128 HOH HOH . H 6 HOH B 52 492 131 HOH HOH . H 6 HOH B 53 493 132 HOH HOH . H 6 HOH B 54 494 137 HOH HOH . H 6 HOH B 55 495 138 HOH HOH . H 6 HOH B 56 496 140 HOH HOH . H 6 HOH B 57 497 143 HOH HOH . H 6 HOH B 58 498 144 HOH HOH . H 6 HOH B 59 499 148 HOH HOH . H 6 HOH B 60 501 153 HOH HOH . H 6 HOH B 61 502 154 HOH HOH . H 6 HOH B 62 503 155 HOH HOH . H 6 HOH B 63 504 156 HOH HOH . H 6 HOH B 64 505 159 HOH HOH . H 6 HOH B 65 506 162 HOH HOH . H 6 HOH B 66 507 163 HOH HOH . H 6 HOH B 67 508 165 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -6.672 _atom_site.Cartn_y 75.075 _atom_site.Cartn_z 33.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #