data_3LP1 # _model_server_result.job_id I_m3Ur4y83g1L1tdC7Ui4g _model_server_result.datetime_utc '2024-11-14 17:45:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 3LP1 # _exptl.entry_id 3LP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LP1 _cell.length_a 118.784 _cell.length_b 155.264 _cell.length_c 155.244 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 77.622 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 446 A ASP 443 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OD2 ASP 446 A ASP 443 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 A OE2 GLU 481 A GLU 478 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 A OD1 ASP 501 A ASP 498 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A OD1 ASP 552 A ASP 549 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C O LP8 . A LP8 601 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 C O3 LP8 . A LP8 601 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc8 C O LP8 . A LP8 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 C N9 LP8 . A LP8 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 271 n n N1 C2 NVP sing 272 n n N1 C15 NVP sing 273 n n CA CB NVP sing 274 n n CA CC NVP sing 275 n n CA HCA NVP sing 276 n n CB CC NVP sing 277 n n CB HCB1 NVP sing 278 n n CB HCB2 NVP sing 279 n n CC HCC1 NVP sing 280 n n CC HCC2 NVP sing 281 n n N3 C4 NVP doub 282 n y N3 C2 NVP sing 283 n y C4 C5 NVP sing 284 n y C4 HC4 NVP sing 285 n n C5 C6 NVP doub 286 n y C5 HC5 NVP sing 287 n n C6 CD NVP sing 288 n n C6 C7 NVP sing 289 n y CD HCD1 NVP sing 290 n n CD HCD2 NVP sing 291 n n CD HCD3 NVP sing 292 n n C2 C7 NVP doub 293 n y C7 N8 NVP sing 294 n n N8 C9 NVP sing 295 n n N8 HN8 NVP sing 296 n n C9 OE NVP doub 297 n n C9 C10 NVP sing 298 n n C10 C15 NVP doub 299 n y C10 C11 NVP sing 300 n y C15 N14 NVP sing 301 n y C11 C12 NVP doub 302 n y C11 H11 NVP sing 303 n n C12 C13 NVP sing 304 n y C12 H12 NVP sing 305 n n C13 N14 NVP doub 306 n y C13 H13 NVP sing 307 n n # _atom_sites.entry_id 3LP1 _atom_sites.fract_transf_matrix[1][1] 0.008419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LP8 A 1 601 601 LP8 LP8 . D 4 MN A 1 602 602 MN MN . E 4 MN A 1 603 603 MN MN . F 5 NVP A 1 701 701 NVP NVP . G 6 HOH A 1 561 2 HOH HOH . G 6 HOH A 2 562 3 HOH HOH . G 6 HOH A 3 563 5 HOH HOH . G 6 HOH A 4 564 6 HOH HOH . G 6 HOH A 5 565 7 HOH HOH . G 6 HOH A 6 566 8 HOH HOH . G 6 HOH A 7 567 9 HOH HOH . G 6 HOH A 8 568 10 HOH HOH . G 6 HOH A 9 569 11 HOH HOH . G 6 HOH A 10 570 13 HOH HOH . G 6 HOH A 11 571 14 HOH HOH . G 6 HOH A 12 572 15 HOH HOH . G 6 HOH A 13 573 16 HOH HOH . G 6 HOH A 14 574 17 HOH HOH . G 6 HOH A 15 575 19 HOH HOH . G 6 HOH A 16 576 22 HOH HOH . G 6 HOH A 17 577 24 HOH HOH . G 6 HOH A 18 578 25 HOH HOH . G 6 HOH A 19 579 26 HOH HOH . G 6 HOH A 20 580 29 HOH HOH . G 6 HOH A 21 581 31 HOH HOH . G 6 HOH A 22 582 32 HOH HOH . G 6 HOH A 23 583 36 HOH HOH . G 6 HOH A 24 584 37 HOH HOH . G 6 HOH A 25 585 38 HOH HOH . G 6 HOH A 26 586 41 HOH HOH . G 6 HOH A 27 587 43 HOH HOH . G 6 HOH A 28 588 44 HOH HOH . G 6 HOH A 29 589 45 HOH HOH . G 6 HOH A 30 590 46 HOH HOH . G 6 HOH A 31 591 49 HOH HOH . G 6 HOH A 32 592 50 HOH HOH . G 6 HOH A 33 593 51 HOH HOH . G 6 HOH A 34 594 52 HOH HOH . G 6 HOH A 35 595 53 HOH HOH . G 6 HOH A 36 596 57 HOH HOH . G 6 HOH A 37 597 63 HOH HOH . G 6 HOH A 38 598 64 HOH HOH . G 6 HOH A 39 599 67 HOH HOH . G 6 HOH A 40 600 72 HOH HOH . G 6 HOH A 41 604 73 HOH HOH . G 6 HOH A 42 605 76 HOH HOH . G 6 HOH A 43 606 77 HOH HOH . G 6 HOH A 44 607 80 HOH HOH . G 6 HOH A 45 608 81 HOH HOH . G 6 HOH A 46 609 82 HOH HOH . G 6 HOH A 47 610 84 HOH HOH . G 6 HOH A 48 611 86 HOH HOH . G 6 HOH A 49 612 87 HOH HOH . G 6 HOH A 50 613 88 HOH HOH . G 6 HOH A 51 614 90 HOH HOH . G 6 HOH A 52 615 92 HOH HOH . G 6 HOH A 53 616 93 HOH HOH . G 6 HOH A 54 617 97 HOH HOH . G 6 HOH A 55 618 98 HOH HOH . G 6 HOH A 56 619 100 HOH HOH . G 6 HOH A 57 620 102 HOH HOH . G 6 HOH A 58 621 103 HOH HOH . G 6 HOH A 59 622 104 HOH HOH . G 6 HOH A 60 623 105 HOH HOH . G 6 HOH A 61 624 106 HOH HOH . G 6 HOH A 62 625 107 HOH HOH . G 6 HOH A 63 626 108 HOH HOH . G 6 HOH A 64 627 109 HOH HOH . G 6 HOH A 65 628 111 HOH HOH . G 6 HOH A 66 629 113 HOH HOH . G 6 HOH A 67 630 114 HOH HOH . G 6 HOH A 68 631 115 HOH HOH . G 6 HOH A 69 632 116 HOH HOH . G 6 HOH A 70 633 117 HOH HOH . G 6 HOH A 71 634 118 HOH HOH . G 6 HOH A 72 635 120 HOH HOH . G 6 HOH A 73 636 121 HOH HOH . G 6 HOH A 74 637 123 HOH HOH . G 6 HOH A 75 638 124 HOH HOH . G 6 HOH A 76 639 125 HOH HOH . G 6 HOH A 77 640 127 HOH HOH . G 6 HOH A 78 641 129 HOH HOH . G 6 HOH A 79 642 130 HOH HOH . G 6 HOH A 80 643 133 HOH HOH . G 6 HOH A 81 644 134 HOH HOH . G 6 HOH A 82 645 135 HOH HOH . G 6 HOH A 83 646 136 HOH HOH . G 6 HOH A 84 647 139 HOH HOH . G 6 HOH A 85 648 141 HOH HOH . G 6 HOH A 86 649 142 HOH HOH . G 6 HOH A 87 650 145 HOH HOH . G 6 HOH A 88 651 146 HOH HOH . G 6 HOH A 89 652 147 HOH HOH . G 6 HOH A 90 653 149 HOH HOH . G 6 HOH A 91 654 151 HOH HOH . G 6 HOH A 92 655 152 HOH HOH . G 6 HOH A 93 656 157 HOH HOH . G 6 HOH A 94 657 158 HOH HOH . G 6 HOH A 95 658 160 HOH HOH . G 6 HOH A 96 659 161 HOH HOH . G 6 HOH A 97 660 164 HOH HOH . G 6 HOH A 98 661 166 HOH HOH . G 6 HOH A 99 662 167 HOH HOH . G 6 HOH A 100 663 168 HOH HOH . G 6 HOH A 101 664 169 HOH HOH . G 6 HOH A 102 665 170 HOH HOH . G 6 HOH A 103 666 171 HOH HOH . G 6 HOH A 104 667 172 HOH HOH . G 6 HOH A 105 668 173 HOH HOH . G 6 HOH A 106 669 174 HOH HOH . G 6 HOH A 107 670 175 HOH HOH . G 6 HOH A 108 671 150 HOH HOH . H 6 HOH B 1 441 1 HOH HOH . H 6 HOH B 2 442 4 HOH HOH . H 6 HOH B 3 443 12 HOH HOH . H 6 HOH B 4 444 18 HOH HOH . H 6 HOH B 5 445 20 HOH HOH . H 6 HOH B 6 446 21 HOH HOH . H 6 HOH B 7 447 23 HOH HOH . H 6 HOH B 8 448 27 HOH HOH . H 6 HOH B 9 449 28 HOH HOH . H 6 HOH B 10 450 30 HOH HOH . H 6 HOH B 11 451 33 HOH HOH . H 6 HOH B 12 452 34 HOH HOH . H 6 HOH B 13 453 35 HOH HOH . H 6 HOH B 14 454 39 HOH HOH . H 6 HOH B 15 455 40 HOH HOH . H 6 HOH B 16 456 42 HOH HOH . H 6 HOH B 17 457 47 HOH HOH . H 6 HOH B 18 458 48 HOH HOH . H 6 HOH B 19 459 54 HOH HOH . H 6 HOH B 20 460 55 HOH HOH . H 6 HOH B 21 461 56 HOH HOH . H 6 HOH B 22 462 58 HOH HOH . H 6 HOH B 23 463 59 HOH HOH . H 6 HOH B 24 464 60 HOH HOH . H 6 HOH B 25 465 61 HOH HOH . H 6 HOH B 26 466 62 HOH HOH . H 6 HOH B 27 467 65 HOH HOH . H 6 HOH B 28 468 66 HOH HOH . H 6 HOH B 29 469 68 HOH HOH . H 6 HOH B 30 470 69 HOH HOH . H 6 HOH B 31 471 70 HOH HOH . H 6 HOH B 32 472 71 HOH HOH . H 6 HOH B 33 473 74 HOH HOH . H 6 HOH B 34 474 75 HOH HOH . H 6 HOH B 35 475 78 HOH HOH . H 6 HOH B 36 476 79 HOH HOH . H 6 HOH B 37 477 83 HOH HOH . H 6 HOH B 38 478 85 HOH HOH . H 6 HOH B 39 479 89 HOH HOH . H 6 HOH B 40 480 91 HOH HOH . H 6 HOH B 41 481 94 HOH HOH . H 6 HOH B 42 482 95 HOH HOH . H 6 HOH B 43 483 96 HOH HOH . H 6 HOH B 44 484 99 HOH HOH . H 6 HOH B 45 485 101 HOH HOH . H 6 HOH B 46 486 110 HOH HOH . H 6 HOH B 47 487 112 HOH HOH . H 6 HOH B 48 488 119 HOH HOH . H 6 HOH B 49 489 122 HOH HOH . H 6 HOH B 50 490 126 HOH HOH . H 6 HOH B 51 491 128 HOH HOH . H 6 HOH B 52 492 131 HOH HOH . H 6 HOH B 53 493 132 HOH HOH . H 6 HOH B 54 494 137 HOH HOH . H 6 HOH B 55 495 138 HOH HOH . H 6 HOH B 56 496 140 HOH HOH . H 6 HOH B 57 497 143 HOH HOH . H 6 HOH B 58 498 144 HOH HOH . H 6 HOH B 59 499 148 HOH HOH . H 6 HOH B 60 501 153 HOH HOH . H 6 HOH B 61 502 154 HOH HOH . H 6 HOH B 62 503 155 HOH HOH . H 6 HOH B 63 504 156 HOH HOH . H 6 HOH B 64 505 159 HOH HOH . H 6 HOH B 65 506 162 HOH HOH . H 6 HOH B 66 507 163 HOH HOH . H 6 HOH B 67 508 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . F 5 10.917 13.79 17.05 1 35.88 ? N1 NVP 701 A 1 HETATM 2 C CA NVP . . . F 5 12.012 13.872 16.069 1 35.88 ? CA NVP 701 A 1 HETATM 3 C CB NVP . . . F 5 13.437 13.517 16.511 1 35.99 ? CB NVP 701 A 1 HETATM 4 C CC NVP . . . F 5 12.642 12.54 15.647 1 35.92 ? CC NVP 701 A 1 HETATM 5 N N3 NVP . . . F 5 11.556 15.848 18.027 1 36.32 ? N3 NVP 701 A 1 HETATM 6 C C4 NVP . . . F 5 11.617 16.654 19.117 1 36.09 ? C4 NVP 701 A 1 HETATM 7 C C5 NVP . . . F 5 10.994 16.305 20.312 1 35.91 ? C5 NVP 701 A 1 HETATM 8 C C6 NVP . . . F 5 10.651 14.967 20.494 1 35.87 ? C6 NVP 701 A 1 HETATM 9 C CD NVP . . . F 5 10.375 14.472 21.891 1 35.93 ? CD NVP 701 A 1 HETATM 10 C C2 NVP . . . F 5 11.011 14.607 18.145 1 35.83 ? C2 NVP 701 A 1 HETATM 11 C C7 NVP . . . F 5 10.573 14.117 19.384 1 35.87 ? C7 NVP 701 A 1 HETATM 12 N N8 NVP . . . F 5 9.8 13.001 19.444 1 35.97 ? N8 NVP 701 A 1 HETATM 13 C C9 NVP . . . F 5 8.867 12.442 18.63 1 35.81 ? C9 NVP 701 A 1 HETATM 14 O OE NVP . . . F 5 8.212 11.497 19.046 1 36.18 ? OE NVP 701 A 1 HETATM 15 C C10 NVP . . . F 5 8.695 12.843 17.298 1 35.72 ? C10 NVP 701 A 1 HETATM 16 C C15 NVP . . . F 5 9.672 13.523 16.538 1 35.85 ? C15 NVP 701 A 1 HETATM 17 C C11 NVP . . . F 5 7.423 12.705 16.724 1 35.92 ? C11 NVP 701 A 1 HETATM 18 C C12 NVP . . . F 5 7.263 12.847 15.344 1 35.49 ? C12 NVP 701 A 1 HETATM 19 C C13 NVP . . . F 5 8.334 13.355 14.614 1 35.5 ? C13 NVP 701 A 1 HETATM 20 N N14 NVP . . . F 5 9.449 13.825 15.227 1 35.72 ? N14 NVP 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 580 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 20 #