data_3LP2
#
_model_server_result.job_id            s2G5uudev7lBm6QMWtTzrQ 
_model_server_result.datetime_utc      '2024-11-14 23:17:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    3LP2 
#
_exptl.entry_id    3LP2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[4-(diethylamino)phenoxy]-6-(ethoxycarbonyl)-5,8-dihydroxy-7-oxo-7,8-dihydro-1,8-naphthyridin-1-ium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LP2 
_cell.length_a            117.51 
_cell.length_b            154.78 
_cell.length_c            155.786 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 77.893 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 446 A ASP 443 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc2 A OD2 ASP 446 A ASP 443 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc3 A OE2 GLU 481 A GLU 478 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
#
_chem_comp.formula           'C21 H23 N3 O6' 
_chem_comp.formula_weight    413.424 
_chem_comp.id                LP9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[4-(diethylamino)phenoxy]-6-(ethoxycarbonyl)-5,8-dihydroxy-7-oxo-7,8-dihydro-1,8-naphthyridin-1-ium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C4 LP9 sing 194 n y 
C H LP9 sing 195 n n 
N C3 LP9 sing 196 n y 
O C8 LP9 sing 197 n n 
O H20 LP9 sing 198 n n 
C1 C LP9 doub 199 n y 
C1 C2 LP9 sing 200 n y 
C2 N LP9 doub 201 n y 
C2 H2 LP9 sing 202 n n 
C3 N5 LP9 sing 203 n n 
C4 C3 LP9 doub 204 n y 
C4 C8 LP9 sing 205 n n 
N5 C6 LP9 sing 206 n n 
N5 O12 LP9 sing 207 n n 
C6 O11 LP9 doub 208 n n 
C7 C6 LP9 sing 209 n n 
C7 C9 LP9 sing 210 n n 
C8 C7 LP9 doub 211 n n 
C9 O10 LP9 doub 212 n n 
O12 HO12 LP9 sing 213 n n 
O13 C1 LP9 sing 214 n n 
C14 O13 LP9 sing 215 n n 
C15 C14 LP9 sing 216 n y 
C15 H15 LP9 sing 217 n n 
C16 C15 LP9 doub 218 n y 
C16 H16 LP9 sing 219 n n 
C17 C16 LP9 sing 220 n y 
C17 C18 LP9 doub 221 n y 
C18 C19 LP9 sing 222 n y 
C18 H18 LP9 sing 223 n n 
C19 C14 LP9 doub 224 n y 
C19 H19 LP9 sing 225 n n 
N20 C17 LP9 sing 226 n n 
N20 C23 LP9 sing 227 n n 
C21 N20 LP9 sing 228 n n 
C21 H21 LP9 sing 229 n n 
C21 H21A LP9 sing 230 n n 
C22 C21 LP9 sing 231 n n 
C22 H22 LP9 sing 232 n n 
C22 H22A LP9 sing 233 n n 
C22 H22B LP9 sing 234 n n 
C23 H23 LP9 sing 235 n n 
C23 H211 LP9 sing 236 n n 
C24 C23 LP9 sing 237 n n 
C24 H24 LP9 sing 238 n n 
C24 H24A LP9 sing 239 n n 
C24 H221 LP9 sing 240 n n 
O25 C9 LP9 sing 241 n n 
C26 C27 LP9 sing 242 n n 
C26 H26 LP9 sing 243 n n 
C26 H26A LP9 sing 244 n n 
C26 H231 LP9 sing 245 n n 
C27 O25 LP9 sing 246 n n 
C27 H27 LP9 sing 247 n n 
C27 H241 LP9 sing 248 n n 
#
_atom_sites.entry_id                     3LP2 
_atom_sites.fract_transf_matrix[1][1]    0.00851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LP9 A 1 601 601 LP9 LP9 . 
D 4 MN A 1 602 602 MN MN . 
E 4 MN A 1 603 603 MN MN . 
F 5 HOH A 1 561 2 HOH HOH . 
F 5 HOH A 2 562 3 HOH HOH . 
F 5 HOH A 3 563 5 HOH HOH . 
F 5 HOH A 4 564 6 HOH HOH . 
F 5 HOH A 5 565 9 HOH HOH . 
F 5 HOH A 6 566 12 HOH HOH . 
F 5 HOH A 7 567 15 HOH HOH . 
F 5 HOH A 8 568 17 HOH HOH . 
F 5 HOH A 9 569 19 HOH HOH . 
F 5 HOH A 10 570 22 HOH HOH . 
F 5 HOH A 11 571 24 HOH HOH . 
F 5 HOH A 12 572 28 HOH HOH . 
F 5 HOH A 13 573 29 HOH HOH . 
F 5 HOH A 14 574 31 HOH HOH . 
F 5 HOH A 15 575 34 HOH HOH . 
F 5 HOH A 16 576 35 HOH HOH . 
F 5 HOH A 17 577 39 HOH HOH . 
F 5 HOH A 18 578 41 HOH HOH . 
F 5 HOH A 19 579 42 HOH HOH . 
F 5 HOH A 20 580 44 HOH HOH . 
F 5 HOH A 21 581 46 HOH HOH . 
F 5 HOH A 22 582 47 HOH HOH . 
F 5 HOH A 23 583 49 HOH HOH . 
F 5 HOH A 24 584 50 HOH HOH . 
F 5 HOH A 25 585 54 HOH HOH . 
F 5 HOH A 26 586 55 HOH HOH . 
F 5 HOH A 27 587 56 HOH HOH . 
F 5 HOH A 28 588 60 HOH HOH . 
F 5 HOH A 29 589 61 HOH HOH . 
G 5 HOH B 1 441 1 HOH HOH . 
G 5 HOH B 2 442 4 HOH HOH . 
G 5 HOH B 3 443 7 HOH HOH . 
G 5 HOH B 4 444 8 HOH HOH . 
G 5 HOH B 5 445 10 HOH HOH . 
G 5 HOH B 6 446 11 HOH HOH . 
G 5 HOH B 7 447 13 HOH HOH . 
G 5 HOH B 8 448 14 HOH HOH . 
G 5 HOH B 9 449 16 HOH HOH . 
G 5 HOH B 10 450 18 HOH HOH . 
G 5 HOH B 11 451 20 HOH HOH . 
G 5 HOH B 12 452 21 HOH HOH . 
G 5 HOH B 13 453 23 HOH HOH . 
G 5 HOH B 14 454 25 HOH HOH . 
G 5 HOH B 15 455 26 HOH HOH . 
G 5 HOH B 16 456 27 HOH HOH . 
G 5 HOH B 17 457 30 HOH HOH . 
G 5 HOH B 18 458 32 HOH HOH . 
G 5 HOH B 19 459 33 HOH HOH . 
G 5 HOH B 20 460 36 HOH HOH . 
G 5 HOH B 21 461 37 HOH HOH . 
G 5 HOH B 22 462 38 HOH HOH . 
G 5 HOH B 23 463 40 HOH HOH . 
G 5 HOH B 24 464 43 HOH HOH . 
G 5 HOH B 25 465 45 HOH HOH . 
G 5 HOH B 26 466 48 HOH HOH . 
G 5 HOH B 27 467 51 HOH HOH . 
G 5 HOH B 28 468 52 HOH HOH . 
G 5 HOH B 29 469 53 HOH HOH . 
G 5 HOH B 30 470 57 HOH HOH . 
G 5 HOH B 31 471 58 HOH HOH . 
G 5 HOH B 32 472 59 HOH HOH . 
G 5 HOH B 33 473 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C LP9 . . . C 3 9.136 8.357 25.221 1 80.17 ? C LP9 601 A 1 
HETATM 2 N N LP9 . . . C 3 10.628 9.503 27.18 1 80.18 ? N LP9 601 A 1 
HETATM 3 O O LP9 . . . C 3 7.127 6.573 26.008 1 80.13 ? O LP9 601 A 1 
HETATM 4 C C1 LP9 . . . C 3 10.139 9.261 24.87 1 80.13 ? C1 LP9 601 A 1 
HETATM 5 C C2 LP9 . . . C 3 10.897 9.829 25.894 1 80.19 ? C2 LP9 601 A 1 
HETATM 6 C C3 LP9 . . . C 3 9.655 8.632 27.539 1 80.1 ? C3 LP9 601 A 1 
HETATM 7 C C4 LP9 . . . C 3 8.868 8.029 26.554 1 80.13 ? C4 LP9 601 A 1 
HETATM 8 N N5 LP9 . . . C 3 9.417 8.329 28.838 1 80.11 ? N5 LP9 601 A 1 
HETATM 9 C C6 LP9 . . . C 3 8.467 7.477 29.298 1 80.17 ? C6 LP9 601 A 1 
HETATM 10 C C7 LP9 . . . C 3 7.665 6.856 28.327 1 80.31 ? C7 LP9 601 A 1 
HETATM 11 C C8 LP9 . . . C 3 7.868 7.139 26.963 1 80.2 ? C8 LP9 601 A 1 
HETATM 12 C C9 LP9 . . . C 3 6.581 5.898 28.742 1 80.33 ? C9 LP9 601 A 1 
HETATM 13 O O10 LP9 . . . C 3 5.746 6.167 29.595 1 80.53 ? O10 LP9 601 A 1 
HETATM 14 O O11 LP9 . . . C 3 8.301 7.237 30.598 1 80.16 ? O11 LP9 601 A 1 
HETATM 15 O O12 LP9 . . . C 3 10.234 8.965 29.769 1 80.19 ? O12 LP9 601 A 1 
HETATM 16 O O13 LP9 . . . C 3 10.405 9.575 23.596 1 80.03 ? O13 LP9 601 A 1 
HETATM 17 C C14 LP9 . . . C 3 10.835 10.782 23.219 1 79.78 ? C14 LP9 601 A 1 
HETATM 18 C C15 LP9 . . . C 3 9.874 11.757 22.974 1 79.95 ? C15 LP9 601 A 1 
HETATM 19 C C16 LP9 . . . C 3 10.27 13.031 22.571 1 79.86 ? C16 LP9 601 A 1 
HETATM 20 C C17 LP9 . . . C 3 11.601 13.403 22.374 1 79.81 ? C17 LP9 601 A 1 
HETATM 21 C C18 LP9 . . . C 3 12.538 12.393 22.626 1 79.59 ? C18 LP9 601 A 1 
HETATM 22 C C19 LP9 . . . C 3 12.181 11.105 23.031 1 79.76 ? C19 LP9 601 A 1 
HETATM 23 N N20 LP9 . . . C 3 11.924 14.66 21.994 1 79.73 ? N20 LP9 601 A 1 
HETATM 24 C C21 LP9 . . . C 3 11.062 15.458 21.112 1 78.92 ? C21 LP9 601 A 1 
HETATM 25 C C22 LP9 . . . C 3 11.348 15.276 19.621 1 78.84 ? C22 LP9 601 A 1 
HETATM 26 C C23 LP9 . . . C 3 13.116 15.354 22.507 1 79.94 ? C23 LP9 601 A 1 
HETATM 27 C C24 LP9 . . . C 3 14.4 15.108 21.712 1 79.82 ? C24 LP9 601 A 1 
HETATM 28 O O25 LP9 . . . C 3 6.679 4.747 28.064 1 81.25 ? O25 LP9 601 A 1 
HETATM 29 C C26 LP9 . . . C 3 5.082 4.042 26.36 1 82 ? C26 LP9 601 A 1 
HETATM 30 C C27 LP9 . . . C 3 5.451 3.996 27.848 1 81.7 ? C27 LP9 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#