data_3LP3 # _model_server_result.job_id -PtHf0OmQqh3A3qZOFBjRg _model_server_result.datetime_utc '2024-11-14 22:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3LP3 # _exptl.entry_id 3LP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LP3 _cell.length_a 51.256 _cell.length_b 51.256 _cell.length_c 112.773 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_445 x-1,y-1,z 1 0 0 0 1 0 0 0 1 -25.628 -44.388998 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MN MN . A MN 1 1_555 E O11 LP9 . A LP9 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 C MN MN . A MN 1 1_555 E O12 LP9 . A LP9 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc3 C MN MN . A MN 1 1_555 I O HOH . A HOH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 C MN MN . A MN 1 1_555 A OD2 ASP 19 A ASP 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 C MN MN . A MN 1 1_555 A OD2 ASP 125 A ASP 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 D MN MN . A MN 2 1_555 E O12 LP9 . A LP9 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.72 ? metalc ? metalc7 D MN MN . A MN 2 1_555 A OD1 ASP 19 A ASP 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 D MN MN . A MN 2 1_555 A OE2 GLU 54 A GLU 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc9 D MN MN . A MN 2 1_555 A OD1 ASP 74 A ASP 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc10 F O12 LP9 . B LP9 1 1_555 G MN MN . B MN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 F O11 LP9 . B LP9 1 1_555 G MN MN . B MN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 F O12 LP9 . B LP9 1 1_555 H MN MN . B MN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc13 F N LP9 . B LP9 1 1_555 H MN MN . B MN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc14 G MN MN . B MN 2 1_555 B OD1 ASP 19 B ASP 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc15 G MN MN . B MN 2 1_555 B OD2 ASP 125 B ASP 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc16 H MN MN . B MN 3 1_555 B OD2 ASP 19 B ASP 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc17 H MN MN . B MN 3 1_555 B OE1 GLU 54 B GLU 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 H MN MN . B MN 3 1_555 B OD2 ASP 74 B ASP 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LP3 _atom_sites.fract_transf_matrix[1][1] 0.01951 _atom_sites.fract_transf_matrix[1][2] 0.011264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1 1 MN MN . D 2 MN A 1 2 2 MN MN . E 3 LP9 A 1 3 3 LP9 LP9 . F 3 LP9 B 1 1 1 LP9 LP9 . G 2 MN B 1 2 2 MN MN . H 2 MN B 1 3 3 MN MN . I 4 HOH A 1 4 4 HOH HOH . I 4 HOH A 2 6 6 HOH HOH . I 4 HOH A 3 7 7 HOH HOH . I 4 HOH A 4 10 10 HOH HOH . I 4 HOH A 5 11 11 HOH HOH . I 4 HOH A 6 13 13 HOH HOH . I 4 HOH A 7 16 16 HOH HOH . I 4 HOH A 8 563 1 HOH HOH . I 4 HOH A 9 564 3 HOH HOH . J 4 HOH B 1 4 4 HOH HOH . J 4 HOH B 2 5 5 HOH HOH . J 4 HOH B 3 8 8 HOH HOH . J 4 HOH B 4 9 9 HOH HOH . J 4 HOH B 5 12 12 HOH HOH . J 4 HOH B 6 14 14 HOH HOH . J 4 HOH B 7 15 15 HOH HOH . J 4 HOH B 8 17 17 HOH HOH . J 4 HOH B 9 18 18 HOH HOH . J 4 HOH B 10 563 2 HOH HOH . J 4 HOH B 11 564 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.471 _atom_site.Cartn_y 23.758 _atom_site.Cartn_z 36.254 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 1253 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #