data_3LP4 # _model_server_result.job_id xUlAWXSzm6MtKQqlEElSWQ _model_server_result.datetime_utc '2024-11-12 20:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":515}' # _entry.id 3LP4 # _exptl.entry_id 3LP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LP4 _cell.length_a 90.729 _cell.length_b 90.729 _cell.length_c 69.509 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 45.3645 -78.573619 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 90.729 0 0 4 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -45.3645 -78.573619 0 5 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.3645 -78.573619 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 101 A HIS 101 1_555 D MN MN . A MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OD1 ASP 124 A ASP 124 1_555 C MN MN . A MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc3 A OD2 ASP 124 A ASP 124 1_555 D MN MN . A MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc4 A ND1 HIS 126 A HIS 126 1_555 C MN MN . A MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 A OD2 ASP 128 A ASP 128 1_555 D MN MN . A MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OD2 ASP 232 A ASP 232 1_555 C MN MN . A MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc8 A OD1 ASP 234 A ASP 234 1_555 C MN MN . A MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc9 A OD2 ASP 234 A ASP 234 1_555 C MN MN . A MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc10 C MN MN . A MN 514 1_555 I O HOH . A HOH 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc11 D MN MN . A MN 515 1_555 I O HOH . A HOH 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 B ND1 HIS 101 B HIS 101 1_555 G MN MN . B MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc13 B OD1 ASP 124 B ASP 124 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc14 B OD2 ASP 124 B ASP 124 1_555 G MN MN . B MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc15 B ND1 HIS 126 B HIS 126 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc16 B OD2 ASP 128 B ASP 128 1_555 G MN MN . B MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc17 B OD2 ASP 232 B ASP 232 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc18 B OD2 ASP 232 B ASP 232 1_555 G MN MN . B MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc19 B OD1 ASP 234 B ASP 234 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc20 B OD2 ASP 234 B ASP 234 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc21 J O HOH . B HOH 350 1_555 F MN MN . B MN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc22 J O HOH . B HOH 350 1_555 G MN MN . B MN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LP4 _atom_sites.fract_transf_matrix[1][1] 0.011022 _atom_sites.fract_transf_matrix[1][2] 0.006363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 514 514 MN MN . D 2 MN A 1 515 515 MN MN . E 3 LYS A 1 401 401 LYS LYS . F 2 MN B 1 514 514 MN MN . G 2 MN B 1 515 515 MN MN . H 3 LYS B 1 402 402 LYS LYS . I 4 HOH A 1 323 1 HOH TIP . I 4 HOH A 2 324 2 HOH TIP . I 4 HOH A 3 325 7 HOH TIP . I 4 HOH A 4 326 9 HOH TIP . I 4 HOH A 5 327 10 HOH TIP . I 4 HOH A 6 328 12 HOH TIP . I 4 HOH A 7 329 14 HOH TIP . I 4 HOH A 8 330 15 HOH TIP . I 4 HOH A 9 331 16 HOH TIP . I 4 HOH A 10 332 18 HOH TIP . I 4 HOH A 11 333 20 HOH TIP . I 4 HOH A 12 334 21 HOH TIP . I 4 HOH A 13 335 22 HOH TIP . I 4 HOH A 14 336 24 HOH TIP . I 4 HOH A 15 337 25 HOH TIP . I 4 HOH A 16 338 26 HOH TIP . I 4 HOH A 17 339 29 HOH TIP . I 4 HOH A 18 340 30 HOH TIP . I 4 HOH A 19 341 31 HOH TIP . I 4 HOH A 20 342 34 HOH TIP . I 4 HOH A 21 343 36 HOH TIP . I 4 HOH A 22 344 37 HOH TIP . I 4 HOH A 23 345 40 HOH TIP . I 4 HOH A 24 346 41 HOH TIP . I 4 HOH A 25 347 42 HOH TIP . I 4 HOH A 26 348 43 HOH TIP . I 4 HOH A 27 349 45 HOH TIP . I 4 HOH A 28 350 46 HOH TIP . I 4 HOH A 29 351 47 HOH TIP . I 4 HOH A 30 352 48 HOH TIP . I 4 HOH A 31 353 51 HOH TIP . I 4 HOH A 32 354 52 HOH TIP . I 4 HOH A 33 355 58 HOH TIP . I 4 HOH A 34 356 59 HOH TIP . I 4 HOH A 35 357 60 HOH TIP . I 4 HOH A 36 358 61 HOH TIP . I 4 HOH A 37 359 64 HOH TIP . I 4 HOH A 38 360 65 HOH TIP . I 4 HOH A 39 361 66 HOH TIP . I 4 HOH A 40 362 70 HOH TIP . I 4 HOH A 41 363 71 HOH TIP . I 4 HOH A 42 364 72 HOH TIP . I 4 HOH A 43 365 76 HOH TIP . I 4 HOH A 44 366 78 HOH TIP . I 4 HOH A 45 367 79 HOH TIP . I 4 HOH A 46 368 80 HOH TIP . I 4 HOH A 47 369 81 HOH TIP . I 4 HOH A 48 370 83 HOH TIP . I 4 HOH A 49 371 87 HOH TIP . I 4 HOH A 50 372 89 HOH TIP . I 4 HOH A 51 373 90 HOH TIP . I 4 HOH A 52 374 91 HOH TIP . I 4 HOH A 53 375 92 HOH TIP . I 4 HOH A 54 376 94 HOH TIP . I 4 HOH A 55 377 95 HOH TIP . I 4 HOH A 56 378 96 HOH TIP . I 4 HOH A 57 379 98 HOH TIP . I 4 HOH A 58 380 107 HOH TIP . I 4 HOH A 59 381 108 HOH TIP . I 4 HOH A 60 382 109 HOH TIP . I 4 HOH A 61 383 113 HOH TIP . I 4 HOH A 62 384 114 HOH TIP . I 4 HOH A 63 385 115 HOH TIP . I 4 HOH A 64 386 119 HOH TIP . I 4 HOH A 65 387 123 HOH TIP . I 4 HOH A 66 388 124 HOH TIP . I 4 HOH A 67 389 126 HOH TIP . I 4 HOH A 68 390 127 HOH TIP . I 4 HOH A 69 391 129 HOH TIP . I 4 HOH A 70 392 130 HOH TIP . I 4 HOH A 71 393 131 HOH TIP . I 4 HOH A 72 394 133 HOH TIP . I 4 HOH A 73 395 135 HOH TIP . I 4 HOH A 74 396 138 HOH TIP . I 4 HOH A 75 397 140 HOH TIP . I 4 HOH A 76 398 143 HOH TIP . I 4 HOH A 77 399 144 HOH TIP . I 4 HOH A 78 400 145 HOH TIP . I 4 HOH A 79 402 146 HOH TIP . I 4 HOH A 80 403 148 HOH TIP . I 4 HOH A 81 404 149 HOH TIP . I 4 HOH A 82 405 152 HOH TIP . I 4 HOH A 83 406 153 HOH TIP . I 4 HOH A 84 407 155 HOH TIP . I 4 HOH A 85 408 156 HOH TIP . I 4 HOH A 86 409 158 HOH TIP . I 4 HOH A 87 410 159 HOH TIP . I 4 HOH A 88 411 161 HOH TIP . I 4 HOH A 89 412 162 HOH TIP . I 4 HOH A 90 413 163 HOH TIP . I 4 HOH A 91 414 165 HOH TIP . I 4 HOH A 92 415 166 HOH TIP . I 4 HOH A 93 416 170 HOH TIP . I 4 HOH A 94 417 172 HOH TIP . I 4 HOH A 95 418 173 HOH TIP . I 4 HOH A 96 419 176 HOH TIP . I 4 HOH A 97 420 185 HOH TIP . I 4 HOH A 98 421 189 HOH TIP . I 4 HOH A 99 422 190 HOH TIP . I 4 HOH A 100 423 191 HOH TIP . I 4 HOH A 101 424 193 HOH TIP . I 4 HOH A 102 425 194 HOH TIP . I 4 HOH A 103 426 195 HOH TIP . I 4 HOH A 104 427 197 HOH TIP . I 4 HOH A 105 428 200 HOH TIP . I 4 HOH A 106 429 201 HOH TIP . I 4 HOH A 107 430 202 HOH TIP . I 4 HOH A 108 431 203 HOH TIP . I 4 HOH A 109 432 204 HOH TIP . I 4 HOH A 110 433 205 HOH TIP . I 4 HOH A 111 434 209 HOH TIP . I 4 HOH A 112 435 210 HOH TIP . I 4 HOH A 113 999 999 HOH TIP . J 4 HOH B 1 323 3 HOH TIP . J 4 HOH B 2 324 4 HOH TIP . J 4 HOH B 3 325 5 HOH TIP . J 4 HOH B 4 326 6 HOH TIP . J 4 HOH B 5 327 8 HOH TIP . J 4 HOH B 6 328 11 HOH TIP . J 4 HOH B 7 329 13 HOH TIP . J 4 HOH B 8 330 17 HOH TIP . J 4 HOH B 9 331 19 HOH TIP . J 4 HOH B 10 332 23 HOH TIP . J 4 HOH B 11 333 27 HOH TIP . J 4 HOH B 12 334 28 HOH TIP . J 4 HOH B 13 335 32 HOH TIP . J 4 HOH B 14 336 33 HOH TIP . J 4 HOH B 15 337 35 HOH TIP . J 4 HOH B 16 338 38 HOH TIP . J 4 HOH B 17 339 39 HOH TIP . J 4 HOH B 18 340 44 HOH TIP . J 4 HOH B 19 341 49 HOH TIP . J 4 HOH B 20 342 50 HOH TIP . J 4 HOH B 21 343 53 HOH TIP . J 4 HOH B 22 344 54 HOH TIP . J 4 HOH B 23 345 55 HOH TIP . J 4 HOH B 24 346 56 HOH TIP . J 4 HOH B 25 347 57 HOH TIP . J 4 HOH B 26 348 62 HOH TIP . J 4 HOH B 27 349 63 HOH TIP . J 4 HOH B 28 350 67 HOH TIP . J 4 HOH B 29 351 68 HOH TIP . J 4 HOH B 30 352 69 HOH TIP . J 4 HOH B 31 353 73 HOH TIP . J 4 HOH B 32 354 74 HOH TIP . J 4 HOH B 33 355 75 HOH TIP . J 4 HOH B 34 356 77 HOH TIP . J 4 HOH B 35 357 82 HOH TIP . J 4 HOH B 36 358 84 HOH TIP . J 4 HOH B 37 359 85 HOH TIP . J 4 HOH B 38 360 86 HOH TIP . J 4 HOH B 39 361 88 HOH TIP . J 4 HOH B 40 362 93 HOH TIP . J 4 HOH B 41 363 97 HOH TIP . J 4 HOH B 42 364 99 HOH TIP . J 4 HOH B 43 365 100 HOH TIP . J 4 HOH B 44 366 101 HOH TIP . J 4 HOH B 45 367 102 HOH TIP . J 4 HOH B 46 368 103 HOH TIP . J 4 HOH B 47 369 104 HOH TIP . J 4 HOH B 48 370 105 HOH TIP . J 4 HOH B 49 371 106 HOH TIP . J 4 HOH B 50 372 110 HOH TIP . J 4 HOH B 51 373 111 HOH TIP . J 4 HOH B 52 374 112 HOH TIP . J 4 HOH B 53 375 116 HOH TIP . J 4 HOH B 54 376 117 HOH TIP . J 4 HOH B 55 377 118 HOH TIP . J 4 HOH B 56 378 120 HOH TIP . J 4 HOH B 57 379 121 HOH TIP . J 4 HOH B 58 380 122 HOH TIP . J 4 HOH B 59 381 125 HOH TIP . J 4 HOH B 60 382 128 HOH TIP . J 4 HOH B 61 383 132 HOH TIP . J 4 HOH B 62 384 134 HOH TIP . J 4 HOH B 63 385 136 HOH TIP . J 4 HOH B 64 386 137 HOH TIP . J 4 HOH B 65 387 139 HOH TIP . J 4 HOH B 66 388 141 HOH TIP . J 4 HOH B 67 389 142 HOH TIP . J 4 HOH B 68 390 147 HOH TIP . J 4 HOH B 69 391 150 HOH TIP . J 4 HOH B 70 392 151 HOH TIP . J 4 HOH B 71 393 154 HOH TIP . J 4 HOH B 72 394 157 HOH TIP . J 4 HOH B 73 395 160 HOH TIP . J 4 HOH B 74 396 164 HOH TIP . J 4 HOH B 75 397 167 HOH TIP . J 4 HOH B 76 398 168 HOH TIP . J 4 HOH B 77 399 169 HOH TIP . J 4 HOH B 78 400 171 HOH TIP . J 4 HOH B 79 401 174 HOH TIP . J 4 HOH B 80 403 175 HOH TIP . J 4 HOH B 81 404 177 HOH TIP . J 4 HOH B 82 405 178 HOH TIP . J 4 HOH B 83 406 179 HOH TIP . J 4 HOH B 84 407 180 HOH TIP . J 4 HOH B 85 408 181 HOH TIP . J 4 HOH B 86 409 182 HOH TIP . J 4 HOH B 87 410 183 HOH TIP . J 4 HOH B 88 411 187 HOH TIP . J 4 HOH B 89 412 188 HOH TIP . J 4 HOH B 90 413 192 HOH TIP . J 4 HOH B 91 414 196 HOH TIP . J 4 HOH B 92 415 198 HOH TIP . J 4 HOH B 93 416 199 HOH TIP . J 4 HOH B 94 417 206 HOH TIP . J 4 HOH B 95 418 207 HOH TIP . J 4 HOH B 96 419 208 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.16 _atom_site.Cartn_y -47.198 _atom_site.Cartn_z 37.925 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 515 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #