data_3LPY # _model_server_result.job_id yV3KaVUPdX75ylcxnlRlew _model_server_result.datetime_utc '2024-12-26 11:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":86}' # _entry.id 3LPY # _exptl.entry_id 3LPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LPY _cell.length_a 59.833 _cell.length_b 59.833 _cell.length_c 50.909 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 3LPY _atom_sites.fract_transf_matrix[1][1] 0.016713 _atom_sites.fract_transf_matrix[1][2] 0.009649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 83 83 SO4 SO4 . D 2 SO4 A 1 84 84 SO4 SO4 . E 2 SO4 B 1 83 83 SO4 SO4 . F 2 SO4 B 1 84 84 SO4 SO4 . G 3 EPE B 1 85 85 EPE EPE . H 3 EPE B 1 86 86 EPE EPE . I 4 HOH A 1 85 85 HOH HOH . I 4 HOH A 2 86 86 HOH HOH . I 4 HOH A 3 87 87 HOH HOH . I 4 HOH A 4 88 88 HOH HOH . I 4 HOH A 5 89 89 HOH HOH . I 4 HOH A 6 90 90 HOH HOH . I 4 HOH A 7 91 91 HOH HOH . I 4 HOH A 8 92 92 HOH HOH . I 4 HOH A 9 93 93 HOH HOH . I 4 HOH A 10 94 94 HOH HOH . I 4 HOH A 11 95 95 HOH HOH . I 4 HOH A 12 96 96 HOH HOH . I 4 HOH A 13 97 97 HOH HOH . I 4 HOH A 14 98 98 HOH HOH . I 4 HOH A 15 99 99 HOH HOH . I 4 HOH A 16 100 100 HOH HOH . I 4 HOH A 17 101 101 HOH HOH . I 4 HOH A 18 102 102 HOH HOH . I 4 HOH A 19 103 103 HOH HOH . I 4 HOH A 20 104 104 HOH HOH . I 4 HOH A 21 105 105 HOH HOH . I 4 HOH A 22 106 106 HOH HOH . I 4 HOH A 23 107 107 HOH HOH . I 4 HOH A 24 108 108 HOH HOH . I 4 HOH A 25 109 109 HOH HOH . I 4 HOH A 26 110 110 HOH HOH . I 4 HOH A 27 111 111 HOH HOH . I 4 HOH A 28 112 112 HOH HOH . I 4 HOH A 29 113 113 HOH HOH . I 4 HOH A 30 114 114 HOH HOH . I 4 HOH A 31 115 115 HOH HOH . I 4 HOH A 32 116 116 HOH HOH . I 4 HOH A 33 117 117 HOH HOH . I 4 HOH A 34 118 118 HOH HOH . I 4 HOH A 35 119 119 HOH HOH . I 4 HOH A 36 120 120 HOH HOH . I 4 HOH A 37 121 121 HOH HOH . I 4 HOH A 38 122 122 HOH HOH . I 4 HOH A 39 123 123 HOH HOH . I 4 HOH A 40 124 124 HOH HOH . I 4 HOH A 41 125 125 HOH HOH . I 4 HOH A 42 126 126 HOH HOH . I 4 HOH A 43 127 127 HOH HOH . I 4 HOH A 44 128 128 HOH HOH . I 4 HOH A 45 129 129 HOH HOH . I 4 HOH A 46 130 130 HOH HOH . I 4 HOH A 47 131 131 HOH HOH . J 4 HOH B 1 87 87 HOH HOH . J 4 HOH B 2 88 88 HOH HOH . J 4 HOH B 3 89 89 HOH HOH . J 4 HOH B 4 90 90 HOH HOH . J 4 HOH B 5 91 91 HOH HOH . J 4 HOH B 6 92 92 HOH HOH . J 4 HOH B 7 93 93 HOH HOH . J 4 HOH B 8 94 94 HOH HOH . J 4 HOH B 9 95 95 HOH HOH . J 4 HOH B 10 96 96 HOH HOH . J 4 HOH B 11 97 97 HOH HOH . J 4 HOH B 12 98 98 HOH HOH . J 4 HOH B 13 99 99 HOH HOH . J 4 HOH B 14 100 100 HOH HOH . J 4 HOH B 15 101 101 HOH HOH . J 4 HOH B 16 102 102 HOH HOH . J 4 HOH B 17 103 103 HOH HOH . J 4 HOH B 18 104 104 HOH HOH . J 4 HOH B 19 105 105 HOH HOH . J 4 HOH B 20 106 106 HOH HOH . J 4 HOH B 21 107 107 HOH HOH . J 4 HOH B 22 108 108 HOH HOH . J 4 HOH B 23 109 109 HOH HOH . J 4 HOH B 24 110 110 HOH HOH . J 4 HOH B 25 111 111 HOH HOH . J 4 HOH B 26 112 112 HOH HOH . J 4 HOH B 27 113 113 HOH HOH . J 4 HOH B 28 114 114 HOH HOH . J 4 HOH B 29 115 115 HOH HOH . J 4 HOH B 30 116 116 HOH HOH . J 4 HOH B 31 117 117 HOH HOH . J 4 HOH B 32 118 118 HOH HOH . J 4 HOH B 33 119 119 HOH HOH . J 4 HOH B 34 120 120 HOH HOH . J 4 HOH B 35 121 121 HOH HOH . J 4 HOH B 36 122 122 HOH HOH . J 4 HOH B 37 123 123 HOH HOH . J 4 HOH B 38 124 124 HOH HOH . J 4 HOH B 39 125 125 HOH HOH . J 4 HOH B 40 126 126 HOH HOH . J 4 HOH B 41 127 127 HOH HOH . J 4 HOH B 42 128 128 HOH HOH . J 4 HOH B 43 129 129 HOH HOH . J 4 HOH B 44 130 130 HOH HOH . J 4 HOH B 45 131 131 HOH HOH . J 4 HOH B 46 132 132 HOH HOH . J 4 HOH B 47 133 133 HOH HOH . J 4 HOH B 48 134 134 HOH HOH . J 4 HOH B 49 135 135 HOH HOH . J 4 HOH B 50 136 136 HOH HOH . J 4 HOH B 51 137 137 HOH HOH . J 4 HOH B 52 138 138 HOH HOH . J 4 HOH B 53 139 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 3 0.562 16.284 11.418 1 82.38 ? N1 EPE 86 B 1 HETATM 2 C C2 EPE . . . H 3 1.927 15.729 11.417 1 81.53 ? C2 EPE 86 B 1 HETATM 3 C C3 EPE . . . H 3 2.704 16.403 10.255 1 80.57 ? C3 EPE 86 B 1 HETATM 4 N N4 EPE . . . H 3 2.849 17.843 10.574 1 79.73 ? N4 EPE 86 B 1 HETATM 5 C C5 EPE . . . H 3 1.483 18.437 10.612 1 80.57 ? C5 EPE 86 B 1 HETATM 6 C C6 EPE . . . H 3 0.693 17.751 11.726 1 81.59 ? C6 EPE 86 B 1 HETATM 7 C C7 EPE . . . H 3 3.62 18.502 9.491 1 77.83 ? C7 EPE 86 B 1 HETATM 8 C C8 EPE . . . H 3 3.842 19.981 9.785 1 76.26 ? C8 EPE 86 B 1 HETATM 9 O O8 EPE . . . H 3 4.885 20.078 10.756 1 73.65 ? O8 EPE 86 B 1 HETATM 10 C C9 EPE . . . H 3 -0.185 15.619 12.49 1 85.28 ? C9 EPE 86 B 1 HETATM 11 C C10 EPE . . . H 3 -1.623 16.137 12.47 1 88 ? C10 EPE 86 B 1 HETATM 12 S S EPE . . . H 3 -2.648 15.353 13.709 1 89.75 ? S EPE 86 B 1 HETATM 13 O O1S EPE . . . H 3 -3.041 16.05 14.874 1 88.99 ? O1S EPE 86 B 1 HETATM 14 O O2S EPE . . . H 3 -3.476 14.304 13.143 1 89.58 ? O2S EPE 86 B 1 HETATM 15 O O3S EPE . . . H 3 -3.679 16.258 13.056 1 89.63 ? O3S EPE 86 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #