data_3LQ5
#
_model_server_result.job_id            cIGLZNfgYIAb_hfQ7bKHeg 
_model_server_result.datetime_utc      '2025-08-26 14:27:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":331}' 
#
_entry.id    3LQ5 
#
_exptl.entry_id    3LQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.533 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-({9-(1-methylethyl)-6-[(4-pyridin-2-ylbenzyl)amino]-9H-purin-2-yl}amino)butan-1-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LQ5 
_cell.length_a            173.249 
_cell.length_b            173.249 
_cell.length_c            99.241 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 186 A TYR 185 1_555 A N TPO 187 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C TPO 187 A TPO 186 1_555 A N ASN 188 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C24 H29 N7 O' 
_chem_comp.formula_weight    431.533 
_chem_comp.id                SLQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-({9-(1-methylethyl)-6-[(4-pyridin-2-ylbenzyl)amino]-9H-purin-2-yl}amino)butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SLQ doub 290 n y 
N1 C6 SLQ sing 291 n y 
O1 C15 SLQ sing 292 n n 
C2 N2 SLQ sing 293 n n 
C2 N3 SLQ sing 294 n y 
N2 C12 SLQ sing 295 n n 
N3 C4 SLQ doub 296 n y 
C4 C5 SLQ sing 297 n y 
C4 N9 SLQ sing 298 n y 
C5 C6 SLQ doub 299 n y 
C5 N7 SLQ sing 300 n y 
C6 N6 SLQ sing 301 n n 
N6 CA' SLQ sing 302 n n 
N7 C8 SLQ doub 303 n y 
C8 N9 SLQ sing 304 n y 
C9 N9 SLQ sing 305 n n 
C9 C10 SLQ sing 306 n n 
C9 C11 SLQ sing 307 n n 
C1' C2' SLQ doub 308 n y 
C1' C6' SLQ sing 309 n y 
C1' CA' SLQ sing 310 n n 
C12 C13 SLQ sing 311 n n 
C12 C15 SLQ sing 312 n n 
C13 C14 SLQ sing 313 n n 
C1B N1B SLQ doub 314 n y 
C1B C2B SLQ sing 315 n y 
C1B C4' SLQ sing 316 n y 
N1B C5B SLQ sing 317 n y 
C2' C3' SLQ sing 318 n y 
C2B C3B SLQ doub 319 n y 
C3' C4' SLQ doub 320 n y 
C3B C4B SLQ sing 321 n y 
C4' C5' SLQ sing 322 n y 
C4B C5B SLQ doub 323 n y 
C5' C6' SLQ doub 324 n y 
O1 HO1 SLQ sing 325 n n 
N2 HN2 SLQ sing 326 n n 
N6 HN6 SLQ sing 327 n n 
C8 H8 SLQ sing 328 n n 
C9 H9 SLQ sing 329 n n 
C10 H10 SLQ sing 330 n n 
C10 H10A SLQ sing 331 n n 
C10 H10B SLQ sing 332 n n 
C11 H11 SLQ sing 333 n n 
C11 H11A SLQ sing 334 n n 
C11 H11B SLQ sing 335 n n 
C12 H12 SLQ sing 336 n n 
C13 H13 SLQ sing 337 n n 
C13 H13A SLQ sing 338 n n 
C14 H14 SLQ sing 339 n n 
C14 H14A SLQ sing 340 n n 
C14 H14B SLQ sing 341 n n 
C15 H15 SLQ sing 342 n n 
C15 H15A SLQ sing 343 n n 
C2' H2' SLQ sing 344 n n 
C2B H2B SLQ sing 345 n n 
C3' H3' SLQ sing 346 n n 
C3B H3B SLQ sing 347 n n 
C4B H4B SLQ sing 348 n n 
C5' H5' SLQ sing 349 n n 
C5B H5B SLQ sing 350 n n 
C6' H6' SLQ sing 351 n n 
CA' HA' SLQ sing 352 n n 
CA' "HA'A" SLQ sing 353 n n 
#
_atom_sites.entry_id                     3LQ5 
_atom_sites.fract_transf_matrix[1][1]    0.005772 
_atom_sites.fract_transf_matrix[1][2]    0.003332 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SLQ A 1 331 331 SLQ SLQ . 
D 4 HOH A 1 332 332 HOH HOH . 
D 4 HOH A 2 333 333 HOH HOH . 
D 4 HOH A 3 334 334 HOH HOH . 
D 4 HOH A 4 335 335 HOH HOH . 
D 4 HOH A 5 336 336 HOH HOH . 
E 4 HOH B 1 260 260 HOH HOH . 
E 4 HOH B 2 261 261 HOH HOH . 
E 4 HOH B 3 262 262 HOH HOH . 
E 4 HOH B 4 263 263 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SLQ . . . C 3 55.336 -17.504 -11.365 0.99 90.63 ? N1 SLQ 331 A 1 
HETATM 2 O O1 SLQ . . . C 3 52.564 -20.63 -12.495 0.99 115.37 ? O1 SLQ 331 A 1 
HETATM 3 C C2 SLQ . . . C 3 53.986 -17.467 -11.485 0.99 91.04 ? C2 SLQ 331 A 1 
HETATM 4 N N2 SLQ . . . C 3 53.185 -18.583 -11.03 0.99 96.76 ? N2 SLQ 331 A 1 
HETATM 5 N N3 SLQ . . . C 3 53.386 -16.335 -11.937 0.99 97.59 ? N3 SLQ 331 A 1 
HETATM 6 C C4 SLQ . . . C 3 54.122 -15.261 -12.274 0.99 93.44 ? C4 SLQ 331 A 1 
HETATM 7 C C5 SLQ . . . C 3 55.473 -15.304 -12.161 0.99 91.42 ? C5 SLQ 331 A 1 
HETATM 8 C C6 SLQ . . . C 3 56.067 -16.441 -11.7 0.99 93.26 ? C6 SLQ 331 A 1 
HETATM 9 N N6 SLQ . . . C 3 57.489 -16.504 -11.496 0.99 98.72 ? N6 SLQ 331 A 1 
HETATM 10 N N7 SLQ . . . C 3 55.961 -14.132 -12.56 0.99 88.25 ? N7 SLQ 331 A 1 
HETATM 11 C C8 SLQ . . . C 3 54.916 -13.357 -12.926 0.99 85.52 ? C8 SLQ 331 A 1 
HETATM 12 C C9 SLQ . . . C 3 52.42 -13.606 -12.98 0.99 86.45 ? C9 SLQ 331 A 1 
HETATM 13 N N9 SLQ . . . C 3 53.781 -14.061 -12.744 0.99 85.43 ? N9 SLQ 331 A 1 
HETATM 14 C C1' SLQ . . . C 3 59.382 -17.839 -12.121 0.99 102.38 ? C1' SLQ 331 A 1 
HETATM 15 C C10 SLQ . . . C 3 51.679 -14.328 -14.104 0.99 88.9 ? C10 SLQ 331 A 1 
HETATM 16 C C11 SLQ . . . C 3 51.593 -13.467 -11.705 0.99 79.25 ? C11 SLQ 331 A 1 
HETATM 17 C C12 SLQ . . . C 3 52.057 -19.299 -10.465 0.99 109.34 ? C12 SLQ 331 A 1 
HETATM 18 C C13 SLQ . . . C 3 50.789 -18.439 -10.557 0.99 108.99 ? C13 SLQ 331 A 1 
HETATM 19 C C14 SLQ . . . C 3 49.479 -19.114 -10.156 0.99 110.16 ? C14 SLQ 331 A 1 
HETATM 20 C C15 SLQ . . . C 3 51.879 -20.558 -11.275 0.99 117.92 ? C15 SLQ 331 A 1 
HETATM 21 C C1B SLQ . . . C 3 61.102 -19.734 -15.393 0.99 125.95 ? C1B SLQ 331 A 1 
HETATM 22 N N1B SLQ . . . C 3 61.824 -18.944 -16.267 0.99 118.45 ? N1B SLQ 331 A 1 
HETATM 23 C C2' SLQ . . . C 3 60.165 -17.11 -13.012 0.99 97.65 ? C2' SLQ 331 A 1 
HETATM 24 C C2B SLQ . . . C 3 60.934 -21.108 -15.634 0.99 127.96 ? C2B SLQ 331 A 1 
HETATM 25 C C3' SLQ . . . C 3 60.736 -17.767 -14.095 0.99 106.37 ? C3' SLQ 331 A 1 
HETATM 26 C C3B SLQ . . . C 3 61.513 -21.667 -16.746 0.99 129.35 ? C3B SLQ 331 A 1 
HETATM 27 C C4' SLQ . . . C 3 60.515 -19.137 -14.284 0.99 118.84 ? C4' SLQ 331 A 1 
HETATM 28 C C4B SLQ . . . C 3 62.237 -20.874 -17.609 0.99 128.52 ? C4B SLQ 331 A 1 
HETATM 29 C C5' SLQ . . . C 3 59.706 -19.863 -13.383 0.99 114.93 ? C5' SLQ 331 A 1 
HETATM 30 C C5B SLQ . . . C 3 62.399 -19.498 -17.376 0.99 117.02 ? C5B SLQ 331 A 1 
HETATM 31 C C6' SLQ . . . C 3 59.125 -19.207 -12.289 0.99 104 ? C6' SLQ 331 A 1 
HETATM 32 C CA' SLQ . . . C 3 58.725 -17.063 -11.009 0.99 103.45 ? CA' SLQ 331 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#