data_3LQR # _model_server_result.job_id mu3OiOIYkTDlRPFdEBJtCQ _model_server_result.datetime_utc '2024-12-27 07:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3LQR # _exptl.entry_id 3LQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LQR _cell.length_a 181.33 _cell.length_b 181.33 _cell.length_c 202.88 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 601 1_555 D O2G ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 B OG SER 166 B SER 166 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc3 E MG MG . B MG 601 1_555 F O2G ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3LQR _atom_sites.fract_transf_matrix[1][1] 0.005515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 601 MG MG . D 3 ATP A 1 602 602 ATP ATP . E 2 MG B 1 601 601 MG MG . F 3 ATP B 1 602 602 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 15.369 -43.051 34.66 1 175.63 ? PG ATP 602 A 1 HETATM 2 O O1G ATP . . . D 3 16.81 -42.842 35.084 1 145.46 ? O1G ATP 602 A 1 HETATM 3 O O2G ATP . . . D 3 14.384 -42.646 35.751 1 171.17 ? O2G ATP 602 A 1 HETATM 4 O O3G ATP . . . D 3 15.034 -42.627 33.246 1 189.77 ? O3G ATP 602 A 1 HETATM 5 P PB ATP . . . D 3 15.563 -45.501 35.743 1 129.39 ? PB ATP 602 A 1 HETATM 6 O O1B ATP . . . D 3 15.453 -44.462 36.841 1 119.09 ? O1B ATP 602 A 1 HETATM 7 O O2B ATP . . . D 3 16.885 -46.15 35.409 1 126.13 ? O2B ATP 602 A 1 HETATM 8 O O3B ATP . . . D 3 15.168 -44.631 34.474 1 351 ? O3B ATP 602 A 1 HETATM 9 P PA ATP . . . D 3 13.286 -46.719 37.034 1 136.05 ? PA ATP 602 A 1 HETATM 10 O O1A ATP . . . D 3 13.898 -47.42 38.204 1 129.93 ? O1A ATP 602 A 1 HETATM 11 O O2A ATP . . . D 3 12.589 -45.375 37.236 1 138.74 ? O2A ATP 602 A 1 HETATM 12 O O3A ATP . . . D 3 14.436 -46.679 35.883 1 130.11 ? O3A ATP 602 A 1 HETATM 13 O O5' ATP . . . D 3 12.181 -47.767 36.592 1 109.29 ? O5' ATP 602 A 1 HETATM 14 C C5' ATP . . . D 3 10.808 -47.467 36.81 1 110.76 ? C5' ATP 602 A 1 HETATM 15 C C4' ATP . . . D 3 10.122 -48.64 36.128 1 150.36 ? C4' ATP 602 A 1 HETATM 16 O O4' ATP . . . D 3 11.058 -49.731 36.039 1 168.44 ? O4' ATP 602 A 1 HETATM 17 C C3' ATP . . . D 3 8.913 -49.202 36.857 1 150.42 ? C3' ATP 602 A 1 HETATM 18 O O3' ATP . . . D 3 7.679 -48.574 36.475 1 147.68 ? O3' ATP 602 A 1 HETATM 19 C C2' ATP . . . D 3 8.974 -50.666 36.46 1 146.32 ? C2' ATP 602 A 1 HETATM 20 O O2' ATP . . . D 3 8.463 -50.796 35.134 1 149.84 ? O2' ATP 602 A 1 HETATM 21 C C1' ATP . . . D 3 10.458 -50.988 36.404 1 160.74 ? C1' ATP 602 A 1 HETATM 22 N N9 ATP . . . D 3 10.961 -51.381 37.757 1 175.45 ? N9 ATP 602 A 1 HETATM 23 C C8 ATP . . . D 3 12.13 -50.97 38.301 1 169.16 ? C8 ATP 602 A 1 HETATM 24 N N7 ATP . . . D 3 12.313 -51.479 39.549 1 161.99 ? N7 ATP 602 A 1 HETATM 25 C C5 ATP . . . D 3 11.24 -52.246 39.833 1 174.33 ? C5 ATP 602 A 1 HETATM 26 C C6 ATP . . . D 3 10.795 -53.075 40.988 1 157.84 ? C6 ATP 602 A 1 HETATM 27 N N6 ATP . . . D 3 11.562 -53.182 42.103 1 131.94 ? N6 ATP 602 A 1 HETATM 28 N N1 ATP . . . D 3 9.605 -53.724 40.882 1 170.24 ? N1 ATP 602 A 1 HETATM 29 C C2 ATP . . . D 3 8.841 -53.63 39.771 1 184.99 ? C2 ATP 602 A 1 HETATM 30 N N3 ATP . . . D 3 9.182 -52.895 38.689 1 194.12 ? N3 ATP 602 A 1 HETATM 31 C C4 ATP . . . D 3 10.352 -52.19 38.65 1 189.32 ? C4 ATP 602 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #