data_3LQR # _model_server_result.job_id g0H0iFm_IK1-C-KLMspYKA _model_server_result.datetime_utc '2024-10-19 08:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 3LQR # _exptl.entry_id 3LQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LQR _cell.length_a 181.33 _cell.length_b 181.33 _cell.length_c 202.88 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 601 1_555 D O2G ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 B OG SER 166 B SER 166 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc3 E MG MG . B MG 601 1_555 F O2G ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3LQR _atom_sites.fract_transf_matrix[1][1] 0.005515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 601 MG MG . D 3 ATP A 1 602 602 ATP ATP . E 2 MG B 1 601 601 MG MG . F 3 ATP B 1 602 602 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 3 -19.659 -41.217 34.388 1 163.53 ? PG ATP 602 B 1 HETATM 2 O O1G ATP . . . F 3 -18.567 -41.581 35.393 1 95.95 ? O1G ATP 602 B 1 HETATM 3 O O2G ATP . . . F 3 -20.352 -39.889 34.626 1 162.41 ? O2G ATP 602 B 1 HETATM 4 O O3G ATP . . . F 3 -19.302 -41.469 32.945 1 186.19 ? O3G ATP 602 B 1 HETATM 5 P PB ATP . . . F 3 -21.181 -43.124 35.782 1 141.11 ? PB ATP 602 B 1 HETATM 6 O O1B ATP . . . F 3 -20.548 -42.4 36.941 1 153.5 ? O1B ATP 602 B 1 HETATM 7 O O2B ATP . . . F 3 -20.853 -44.562 35.477 1 136.94 ? O2B ATP 602 B 1 HETATM 8 O O3B ATP . . . F 3 -20.854 -42.281 34.467 1 334.67 ? O3B ATP 602 B 1 HETATM 9 P PA ATP . . . F 3 -23.463 -42.225 37.104 1 153.17 ? PA ATP 602 B 1 HETATM 10 O O1A ATP . . . F 3 -23.093 -43.021 38.329 1 137.85 ? O1A ATP 602 B 1 HETATM 11 O O2A ATP . . . F 3 -23.131 -40.749 37.039 1 161.88 ? O2A ATP 602 B 1 HETATM 12 O O3A ATP . . . F 3 -22.785 -43.031 35.89 1 150.28 ? O3A ATP 602 B 1 HETATM 13 O O5' ATP . . . F 3 -25.036 -42.386 36.872 1 133.48 ? O5' ATP 602 B 1 HETATM 14 C C5' ATP . . . F 3 -25.872 -41.273 36.587 1 128.51 ? C5' ATP 602 B 1 HETATM 15 C C4' ATP . . . F 3 -27.162 -41.917 36.111 1 156.45 ? C4' ATP 602 B 1 HETATM 16 O O4' ATP . . . F 3 -27.302 -43.239 36.664 1 177.18 ? O4' ATP 602 B 1 HETATM 17 C C3' ATP . . . F 3 -28.445 -41.235 36.56 1 150.68 ? C3' ATP 602 B 1 HETATM 18 O O3' ATP . . . F 3 -28.74 -39.973 35.949 1 121.81 ? O3' ATP 602 B 1 HETATM 19 C C2' ATP . . . F 3 -29.437 -42.332 36.237 1 168.59 ? C2' ATP 602 B 1 HETATM 20 O O2' ATP . . . F 3 -29.57 -42.431 34.819 1 169.51 ? O2' ATP 602 B 1 HETATM 21 C C1' ATP . . . F 3 -28.702 -43.571 36.735 1 182.74 ? C1' ATP 602 B 1 HETATM 22 N N9 ATP . . . F 3 -29.302 -43.899 38.08 1 196.7 ? N9 ATP 602 B 1 HETATM 23 C C8 ATP . . . F 3 -30.574 -43.553 38.372 1 202.2 ? C8 ATP 602 B 1 HETATM 24 N N7 ATP . . . F 3 -30.964 -43.942 39.611 1 181.51 ? N7 ATP 602 B 1 HETATM 25 C C5 ATP . . . F 3 -29.924 -44.578 40.159 1 169.64 ? C5 ATP 602 B 1 HETATM 26 C C6 ATP . . . F 3 -29.698 -45.234 41.465 1 155.71 ? C6 ATP 602 B 1 HETATM 27 N N6 ATP . . . F 3 -30.692 -45.257 42.392 1 149.55 ? N6 ATP 602 B 1 HETATM 28 N N1 ATP . . . F 3 -28.48 -45.794 41.679 1 148.36 ? N1 ATP 602 B 1 HETATM 29 C C2 ATP . . . F 3 -27.512 -45.754 40.737 1 150.06 ? C2 ATP 602 B 1 HETATM 30 N N3 ATP . . . F 3 -27.658 -45.168 39.525 1 171.27 ? N3 ATP 602 B 1 HETATM 31 C C4 ATP . . . F 3 -28.827 -44.57 39.158 1 182.64 ? C4 ATP 602 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #