data_3LQU # _model_server_result.job_id rotry6onRMU3hsu4RIenVQ _model_server_result.datetime_utc '2024-11-23 20:04:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3LQU # _exptl.entry_id 3LQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 5-O-phosphono-D-xylulose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LQU _cell.length_a 66.236 _cell.length_b 77.386 _cell.length_c 149.372 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id 5SP _chem_comp.mon_nstd_flag . _chem_comp.name 5-O-phosphono-D-xylulose _chem_comp.type saccharide _chem_comp.pdbx_synonyms 'D-xylulose 5-phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 5SP sing 1 n n C2 C3 5SP sing 2 n n C3 O4 5SP doub 3 n n C3 C5 5SP sing 4 n n C5 C6 5SP sing 5 n n C5 O13 5SP sing 6 n n C6 C7 5SP sing 7 n n C6 O14 5SP sing 8 n n C7 O8 5SP sing 9 n n O8 P9 5SP sing 10 n n P9 O10 5SP doub 11 n n P9 O11 5SP sing 12 n n P9 O12 5SP sing 13 n n O1 HO1 5SP sing 14 n n C2 H2 5SP sing 15 n n C2 H2A 5SP sing 16 n n C5 H5 5SP sing 17 n n C6 H6 5SP sing 18 n n C7 H7 5SP sing 19 n n C7 H7A 5SP sing 20 n n O11 HO11 5SP sing 21 n n O12 HO12 5SP sing 22 n n O13 HO13 5SP sing 23 n n O14 HO14 5SP sing 24 n n # _atom_sites.entry_id 3LQU _atom_sites.fract_transf_matrix[1][1] 0.015098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5SP A 1 500 500 5SP 5SP . D 3 HOH A 1 300 300 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 304 304 HOH HOH . D 3 HOH A 4 305 305 HOH HOH . D 3 HOH A 5 307 307 HOH HOH . D 3 HOH A 6 313 313 HOH HOH . D 3 HOH A 7 314 314 HOH HOH . D 3 HOH A 8 316 316 HOH HOH . D 3 HOH A 9 317 317 HOH HOH . D 3 HOH A 10 320 320 HOH HOH . D 3 HOH A 11 322 322 HOH HOH . D 3 HOH A 12 323 323 HOH HOH . D 3 HOH A 13 324 324 HOH HOH . D 3 HOH A 14 325 325 HOH HOH . D 3 HOH A 15 326 326 HOH HOH . D 3 HOH A 16 330 330 HOH HOH . D 3 HOH A 17 331 331 HOH HOH . D 3 HOH A 18 334 334 HOH HOH . D 3 HOH A 19 336 336 HOH HOH . D 3 HOH A 20 340 340 HOH HOH . D 3 HOH A 21 343 343 HOH HOH . D 3 HOH A 22 344 344 HOH HOH . D 3 HOH A 23 346 346 HOH HOH . D 3 HOH A 24 347 347 HOH HOH . D 3 HOH A 25 350 350 HOH HOH . D 3 HOH A 26 351 351 HOH HOH . D 3 HOH A 27 353 353 HOH HOH . D 3 HOH A 28 359 359 HOH HOH . D 3 HOH A 29 360 360 HOH HOH . D 3 HOH A 30 361 361 HOH HOH . D 3 HOH A 31 362 362 HOH HOH . D 3 HOH A 32 363 363 HOH HOH . D 3 HOH A 33 366 366 HOH HOH . D 3 HOH A 34 370 370 HOH HOH . D 3 HOH A 35 372 372 HOH HOH . D 3 HOH A 36 373 373 HOH HOH . D 3 HOH A 37 374 374 HOH HOH . D 3 HOH A 38 377 377 HOH HOH . D 3 HOH A 39 378 378 HOH HOH . D 3 HOH A 40 379 379 HOH HOH . D 3 HOH A 41 387 387 HOH HOH . D 3 HOH A 42 388 388 HOH HOH . D 3 HOH A 43 389 389 HOH HOH . D 3 HOH A 44 390 390 HOH HOH . D 3 HOH A 45 392 392 HOH HOH . D 3 HOH A 46 396 396 HOH HOH . D 3 HOH A 47 400 400 HOH HOH . D 3 HOH A 48 401 401 HOH HOH . D 3 HOH A 49 402 402 HOH HOH . D 3 HOH A 50 403 403 HOH HOH . D 3 HOH A 51 405 405 HOH HOH . D 3 HOH A 52 407 407 HOH HOH . D 3 HOH A 53 409 409 HOH HOH . D 3 HOH A 54 413 413 HOH HOH . D 3 HOH A 55 414 414 HOH HOH . D 3 HOH A 56 415 415 HOH HOH . D 3 HOH A 57 416 416 HOH HOH . D 3 HOH A 58 417 417 HOH HOH . D 3 HOH A 59 419 419 HOH HOH . D 3 HOH A 60 423 423 HOH HOH . D 3 HOH A 61 424 424 HOH HOH . D 3 HOH A 62 426 426 HOH HOH . D 3 HOH A 63 427 427 HOH HOH . D 3 HOH A 64 431 431 HOH HOH . D 3 HOH A 65 436 436 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 302 302 HOH HOH . E 3 HOH B 3 306 306 HOH HOH . E 3 HOH B 4 308 308 HOH HOH . E 3 HOH B 5 309 309 HOH HOH . E 3 HOH B 6 310 310 HOH HOH . E 3 HOH B 7 311 311 HOH HOH . E 3 HOH B 8 312 312 HOH HOH . E 3 HOH B 9 315 315 HOH HOH . E 3 HOH B 10 318 318 HOH HOH . E 3 HOH B 11 319 319 HOH HOH . E 3 HOH B 12 321 321 HOH HOH . E 3 HOH B 13 327 327 HOH HOH . E 3 HOH B 14 328 328 HOH HOH . E 3 HOH B 15 329 329 HOH HOH . E 3 HOH B 16 332 332 HOH HOH . E 3 HOH B 17 335 335 HOH HOH . E 3 HOH B 18 337 337 HOH HOH . E 3 HOH B 19 338 338 HOH HOH . E 3 HOH B 20 339 339 HOH HOH . E 3 HOH B 21 341 341 HOH HOH . E 3 HOH B 22 349 349 HOH HOH . E 3 HOH B 23 352 352 HOH HOH . E 3 HOH B 24 354 354 HOH HOH . E 3 HOH B 25 355 355 HOH HOH . E 3 HOH B 26 356 356 HOH HOH . E 3 HOH B 27 357 357 HOH HOH . E 3 HOH B 28 358 358 HOH HOH . E 3 HOH B 29 364 364 HOH HOH . E 3 HOH B 30 365 365 HOH HOH . E 3 HOH B 31 367 367 HOH HOH . E 3 HOH B 32 368 368 HOH HOH . E 3 HOH B 33 369 369 HOH HOH . E 3 HOH B 34 371 371 HOH HOH . E 3 HOH B 35 375 375 HOH HOH . E 3 HOH B 36 376 376 HOH HOH . E 3 HOH B 37 380 380 HOH HOH . E 3 HOH B 38 381 381 HOH HOH . E 3 HOH B 39 382 382 HOH HOH . E 3 HOH B 40 383 383 HOH HOH . E 3 HOH B 41 384 384 HOH HOH . E 3 HOH B 42 385 385 HOH HOH . E 3 HOH B 43 386 386 HOH HOH . E 3 HOH B 44 391 391 HOH HOH . E 3 HOH B 45 393 393 HOH HOH . E 3 HOH B 46 394 394 HOH HOH . E 3 HOH B 47 395 395 HOH HOH . E 3 HOH B 48 398 398 HOH HOH . E 3 HOH B 49 399 399 HOH HOH . E 3 HOH B 50 404 404 HOH HOH . E 3 HOH B 51 406 406 HOH HOH . E 3 HOH B 52 408 408 HOH HOH . E 3 HOH B 53 410 410 HOH HOH . E 3 HOH B 54 411 411 HOH HOH . E 3 HOH B 55 412 412 HOH HOH . E 3 HOH B 56 420 420 HOH HOH . E 3 HOH B 57 421 421 HOH HOH . E 3 HOH B 58 422 422 HOH HOH . E 3 HOH B 59 425 425 HOH HOH . E 3 HOH B 60 428 428 HOH HOH . E 3 HOH B 61 429 429 HOH HOH . E 3 HOH B 62 430 430 HOH HOH . E 3 HOH B 63 435 435 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 5SP . . . C 2 -9.722 -21.772 20.48 1 41.47 ? O1 5SP 500 A 1 HETATM 2 C C2 5SP . . . C 2 -8.833 -22.674 21.065 1 41.63 ? C2 5SP 500 A 1 HETATM 3 C C3 5SP . . . C 2 -8.005 -23.537 20.15 1 39.56 ? C3 5SP 500 A 1 HETATM 4 O O4 5SP . . . C 2 -8.222 -23.523 18.956 1 43.44 ? O4 5SP 500 A 1 HETATM 5 C C5 5SP . . . C 2 -6.994 -24.521 20.709 1 45.39 ? C5 5SP 500 A 1 HETATM 6 C C6 5SP . . . C 2 -7.476 -25.291 21.937 1 43.47 ? C6 5SP 500 A 1 HETATM 7 C C7 5SP . . . C 2 -7.534 -26.781 21.671 1 37.63 ? C7 5SP 500 A 1 HETATM 8 O O8 5SP . . . C 2 -7.304 -27.184 20.343 1 42.35 ? O8 5SP 500 A 1 HETATM 9 P P9 5SP . . . C 2 -6.33 -28.399 20.084 1 44.22 ? P9 5SP 500 A 1 HETATM 10 O O10 5SP . . . C 2 -6.346 -29.216 21.361 1 39.7 ? O10 5SP 500 A 1 HETATM 11 O O11 5SP . . . C 2 -4.874 -27.894 19.838 1 37.13 ? O11 5SP 500 A 1 HETATM 12 O O12 5SP . . . C 2 -6.834 -29.231 18.837 1 24.05 ? O12 5SP 500 A 1 HETATM 13 O O13 5SP . . . C 2 -5.687 -24.038 20.754 1 47.42 ? O13 5SP 500 A 1 HETATM 14 O O14 5SP . . . C 2 -6.888 -24.957 23.142 1 46.23 ? O14 5SP 500 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #