data_3LQV # _model_server_result.job_id 9y1OYnyHyFSyCGCBgDNb9A _model_server_result.datetime_utc '2025-08-31 13:42:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3LQV # _exptl.entry_id 3LQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LQV _cell.length_a 101.848 _cell.length_b 112.702 _cell.length_c 82.163 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 3LQV _atom_sites.fract_transf_matrix[1][1] 0.009819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADE A 1 1 1 ADE ADE . F 3 ADE B 1 2 2 ADE ADE . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 8 8 HOH HOH . G 4 HOH A 3 10 10 HOH HOH . G 4 HOH A 4 126 1 HOH HOH . G 4 HOH A 5 127 14 HOH HOH . G 4 HOH A 6 128 17 HOH HOH . G 4 HOH A 7 129 21 HOH HOH . G 4 HOH A 8 130 24 HOH HOH . G 4 HOH A 9 131 31 HOH HOH . G 4 HOH A 10 132 32 HOH HOH . G 4 HOH A 11 133 33 HOH HOH . G 4 HOH A 12 134 35 HOH HOH . G 4 HOH A 13 135 37 HOH HOH . G 4 HOH A 14 136 38 HOH HOH . G 4 HOH A 15 137 42 HOH HOH . G 4 HOH A 16 138 45 HOH HOH . G 4 HOH A 17 139 50 HOH HOH . G 4 HOH A 18 140 52 HOH HOH . G 4 HOH A 19 141 57 HOH HOH . G 4 HOH A 20 142 59 HOH HOH . G 4 HOH A 21 143 62 HOH HOH . G 4 HOH A 22 144 65 HOH HOH . G 4 HOH A 23 145 70 HOH HOH . G 4 HOH A 24 146 76 HOH HOH . G 4 HOH A 25 147 78 HOH HOH . G 4 HOH A 26 148 79 HOH HOH . G 4 HOH A 27 149 80 HOH HOH . H 4 HOH B 1 3 3 HOH HOH . H 4 HOH B 2 4 4 HOH HOH . H 4 HOH B 3 5 5 HOH HOH . H 4 HOH B 4 6 6 HOH HOH . H 4 HOH B 5 7 7 HOH HOH . H 4 HOH B 6 126 11 HOH HOH . H 4 HOH B 7 127 12 HOH HOH . H 4 HOH B 8 128 19 HOH HOH . H 4 HOH B 9 129 20 HOH HOH . H 4 HOH B 10 130 22 HOH HOH . H 4 HOH B 11 131 23 HOH HOH . H 4 HOH B 12 132 25 HOH HOH . H 4 HOH B 13 133 26 HOH HOH . H 4 HOH B 14 134 29 HOH HOH . H 4 HOH B 15 135 34 HOH HOH . H 4 HOH B 16 136 36 HOH HOH . H 4 HOH B 17 137 39 HOH HOH . H 4 HOH B 18 138 40 HOH HOH . H 4 HOH B 19 139 41 HOH HOH . H 4 HOH B 20 140 43 HOH HOH . H 4 HOH B 21 141 44 HOH HOH . H 4 HOH B 22 142 48 HOH HOH . H 4 HOH B 23 143 51 HOH HOH . H 4 HOH B 24 144 61 HOH HOH . H 4 HOH B 25 145 63 HOH HOH . H 4 HOH B 26 146 64 HOH HOH . H 4 HOH B 27 147 66 HOH HOH . H 4 HOH B 28 148 69 HOH HOH . H 4 HOH B 29 149 71 HOH HOH . H 4 HOH B 30 150 72 HOH HOH . H 4 HOH B 31 151 77 HOH HOH . H 4 HOH B 32 152 81 HOH HOH . H 4 HOH B 33 153 82 HOH HOH . H 4 HOH B 34 154 67 HOH HOH . H 4 HOH B 35 155 54 HOH HOH . I 4 HOH P 1 15 15 HOH HOH . I 4 HOH P 2 27 27 HOH HOH . I 4 HOH P 3 28 28 HOH HOH . I 4 HOH P 4 49 49 HOH HOH . I 4 HOH P 5 55 55 HOH HOH . I 4 HOH P 6 56 56 HOH HOH . I 4 HOH P 7 58 58 HOH HOH . J 4 HOH Q 1 16 16 HOH HOH . J 4 HOH Q 2 30 30 HOH HOH . J 4 HOH Q 3 46 46 HOH HOH . J 4 HOH Q 4 47 47 HOH HOH . J 4 HOH Q 5 53 53 HOH HOH . J 4 HOH Q 6 60 60 HOH HOH . J 4 HOH Q 7 68 68 HOH HOH . J 4 HOH Q 8 73 73 HOH HOH . J 4 HOH Q 9 74 74 HOH HOH . J 4 HOH Q 10 75 75 HOH HOH . J 4 HOH Q 11 83 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . F 3 10.822 20.624 40.113 1 50.9 ? N9 ADE 2 B 1 HETATM 2 C C8 ADE . . . F 3 11.683 20.484 39.045 1 50.66 ? C8 ADE 2 B 1 HETATM 3 N N7 ADE . . . F 3 11.256 19.684 38.094 1 50.83 ? N7 ADE 2 B 1 HETATM 4 C C5 ADE . . . F 3 10.023 19.276 38.564 1 50.53 ? C5 ADE 2 B 1 HETATM 5 C C6 ADE . . . F 3 9.042 18.426 38.005 1 49.81 ? C6 ADE 2 B 1 HETATM 6 N N6 ADE . . . F 3 9.184 17.818 36.815 1 49 ? N6 ADE 2 B 1 HETATM 7 N N1 ADE . . . F 3 7.932 18.225 38.753 1 48.71 ? N1 ADE 2 B 1 HETATM 8 C C2 ADE . . . F 3 7.787 18.826 39.938 1 49.14 ? C2 ADE 2 B 1 HETATM 9 N N3 ADE . . . F 3 8.619 19.676 40.553 1 50.8 ? N3 ADE 2 B 1 HETATM 10 C C4 ADE . . . F 3 9.735 19.85 39.805 1 50.38 ? C4 ADE 2 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #