data_3LQY # _model_server_result.job_id X3iNHo58n5KxUR6FB_E9HA _model_server_result.datetime_utc '2025-08-31 12:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3LQY # _exptl.entry_id 3LQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LQY _cell.length_a 41.59 _cell.length_b 41.59 _cell.length_c 171.198 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 72.035993 57.066 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N THR 3 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ALA 121 A ALA 120 1_555 A N MSE 122 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 A C MSE 122 A MSE 121 1_555 A N THR 123 A THR 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C HIS 124 A HIS 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C MSE 125 A MSE 124 1_555 A N CSD 126 A CSD 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C CSD 126 A CSD 125 1_555 A N ILE 127 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 A C PHE 169 A PHE 168 1_555 A N MSE 170 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C MSE 170 A MSE 169 1_555 A N SER 171 A SER 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 3LQY _atom_sites.fract_transf_matrix[1][1] 0.024044 _atom_sites.fract_transf_matrix[1][2] 0.013882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 190 1 GOL GOL . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1003 1003 HOH HOH . C 3 HOH A 3 1004 1004 HOH HOH . C 3 HOH A 4 1005 1005 HOH HOH . C 3 HOH A 5 1006 1006 HOH HOH . C 3 HOH A 6 1007 1007 HOH HOH . C 3 HOH A 7 1008 1008 HOH HOH . C 3 HOH A 8 1009 1009 HOH HOH . C 3 HOH A 9 1010 1010 HOH HOH . C 3 HOH A 10 1011 1011 HOH HOH . C 3 HOH A 11 1012 1012 HOH HOH . C 3 HOH A 12 1013 1013 HOH HOH . C 3 HOH A 13 1014 1014 HOH HOH . C 3 HOH A 14 1017 1017 HOH HOH . C 3 HOH A 15 1018 1018 HOH HOH . C 3 HOH A 16 1019 1019 HOH HOH . C 3 HOH A 17 1020 1020 HOH HOH . C 3 HOH A 18 1021 1021 HOH HOH . C 3 HOH A 19 1022 1022 HOH HOH . C 3 HOH A 20 1023 1023 HOH HOH . C 3 HOH A 21 1024 1024 HOH HOH . C 3 HOH A 22 1026 1026 HOH HOH . C 3 HOH A 23 1027 1027 HOH HOH . C 3 HOH A 24 1028 1028 HOH HOH . C 3 HOH A 25 1030 1030 HOH HOH . C 3 HOH A 26 1031 1031 HOH HOH . C 3 HOH A 27 1033 1033 HOH HOH . C 3 HOH A 28 1034 1034 HOH HOH . C 3 HOH A 29 1035 1035 HOH HOH . C 3 HOH A 30 1037 1037 HOH HOH . C 3 HOH A 31 1038 1038 HOH HOH . C 3 HOH A 32 1039 1039 HOH HOH . C 3 HOH A 33 1042 1042 HOH HOH . C 3 HOH A 34 1044 1044 HOH HOH . C 3 HOH A 35 1045 1045 HOH HOH . C 3 HOH A 36 1046 1046 HOH HOH . C 3 HOH A 37 1047 1047 HOH HOH . C 3 HOH A 38 1048 1048 HOH HOH . C 3 HOH A 39 1049 1049 HOH HOH . C 3 HOH A 40 1051 1051 HOH HOH . C 3 HOH A 41 1052 1052 HOH HOH . C 3 HOH A 42 1053 1053 HOH HOH . C 3 HOH A 43 1055 1055 HOH HOH . C 3 HOH A 44 1056 1056 HOH HOH . C 3 HOH A 45 1057 1057 HOH HOH . C 3 HOH A 46 1058 1058 HOH HOH . C 3 HOH A 47 1059 1059 HOH HOH . C 3 HOH A 48 1060 1060 HOH HOH . C 3 HOH A 49 1062 1062 HOH HOH . C 3 HOH A 50 1063 1063 HOH HOH . C 3 HOH A 51 1064 1064 HOH HOH . C 3 HOH A 52 1066 1066 HOH HOH . C 3 HOH A 53 1068 1068 HOH HOH . C 3 HOH A 54 1071 1071 HOH HOH . C 3 HOH A 55 1072 1072 HOH HOH . C 3 HOH A 56 1075 1075 HOH HOH . C 3 HOH A 57 1079 1079 HOH HOH . C 3 HOH A 58 1084 1084 HOH HOH . C 3 HOH A 59 1086 1086 HOH HOH . C 3 HOH A 60 1087 1087 HOH HOH . C 3 HOH A 61 1090 1090 HOH HOH . C 3 HOH A 62 1092 1092 HOH HOH . C 3 HOH A 63 1095 1095 HOH HOH . C 3 HOH A 64 1098 1098 HOH HOH . C 3 HOH A 65 1099 1099 HOH HOH . C 3 HOH A 66 1100 1100 HOH HOH . C 3 HOH A 67 1101 1101 HOH HOH . C 3 HOH A 68 1107 1107 HOH HOH . C 3 HOH A 69 1111 1111 HOH HOH . C 3 HOH A 70 1112 1112 HOH HOH . C 3 HOH A 71 1116 1116 HOH HOH . C 3 HOH A 72 1117 1117 HOH HOH . C 3 HOH A 73 1118 1118 HOH HOH . C 3 HOH A 74 1119 1119 HOH HOH . C 3 HOH A 75 1120 1120 HOH HOH . C 3 HOH A 76 1121 1121 HOH HOH . C 3 HOH A 77 1122 1122 HOH HOH . C 3 HOH A 78 1125 1125 HOH HOH . C 3 HOH A 79 1126 1126 HOH HOH . C 3 HOH A 80 1128 1128 HOH HOH . C 3 HOH A 81 1129 1129 HOH HOH . C 3 HOH A 82 1132 1132 HOH HOH . C 3 HOH A 83 1134 1134 HOH HOH . C 3 HOH A 84 1136 1136 HOH HOH . C 3 HOH A 85 1137 1137 HOH HOH . C 3 HOH A 86 1140 1140 HOH HOH . C 3 HOH A 87 1142 1142 HOH HOH . C 3 HOH A 88 1143 1143 HOH HOH . C 3 HOH A 89 1145 1145 HOH HOH . C 3 HOH A 90 1147 1147 HOH HOH . C 3 HOH A 91 1148 1148 HOH HOH . C 3 HOH A 92 1152 1152 HOH HOH . C 3 HOH A 93 1155 1155 HOH HOH . C 3 HOH A 94 1156 1156 HOH HOH . C 3 HOH A 95 1158 1158 HOH HOH . C 3 HOH A 96 1159 1159 HOH HOH . C 3 HOH A 97 1161 1161 HOH HOH . C 3 HOH A 98 1162 1162 HOH HOH . C 3 HOH A 99 1165 1165 HOH HOH . C 3 HOH A 100 1172 1172 HOH HOH . C 3 HOH A 101 1173 1173 HOH HOH . C 3 HOH A 102 1174 1174 HOH HOH . C 3 HOH A 103 1175 1175 HOH HOH . C 3 HOH A 104 1177 1177 HOH HOH . C 3 HOH A 105 1178 1178 HOH HOH . C 3 HOH A 106 1179 1179 HOH HOH . C 3 HOH A 107 1182 1182 HOH HOH . C 3 HOH A 108 1184 1184 HOH HOH . C 3 HOH A 109 1185 1185 HOH HOH . C 3 HOH A 110 1186 1186 HOH HOH . C 3 HOH A 111 1188 1188 HOH HOH . C 3 HOH A 112 1190 1190 HOH HOH . C 3 HOH A 113 1191 1191 HOH HOH . C 3 HOH A 114 1192 1192 HOH HOH . C 3 HOH A 115 1194 1194 HOH HOH . C 3 HOH A 116 1195 1195 HOH HOH . C 3 HOH A 117 1196 1196 HOH HOH . C 3 HOH A 118 1197 1197 HOH HOH . C 3 HOH A 119 1198 1198 HOH HOH . C 3 HOH A 120 1200 1200 HOH HOH . C 3 HOH A 121 1204 1204 HOH HOH . C 3 HOH A 122 1205 1205 HOH HOH . C 3 HOH A 123 1206 1206 HOH HOH . C 3 HOH A 124 1207 1207 HOH HOH . C 3 HOH A 125 1208 1208 HOH HOH . C 3 HOH A 126 1209 1209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 22.906 31.806 17.427 0.6 47 ? C1 GOL 190 A 1 HETATM 2 O O1 GOL . . . B 2 22.393 33.128 17.314 0.6 41.26 ? O1 GOL 190 A 1 HETATM 3 C C2 GOL . . . B 2 23.803 31.6 18.677 0.6 50.18 ? C2 GOL 190 A 1 HETATM 4 O O2 GOL . . . B 2 25.064 32.228 18.648 0.6 52.84 ? O2 GOL 190 A 1 HETATM 5 C C3 GOL . . . B 2 24.063 30.11 18.88 0.6 51.46 ? C3 GOL 190 A 1 HETATM 6 O O3 GOL . . . B 2 25.286 29.841 19.536 0.6 52.65 ? O3 GOL 190 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #