data_3LR1 # _model_server_result.job_id HxEPauaj2Ol7ghlPG7w_yQ _model_server_result.datetime_utc '2024-10-20 01:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":236}' # _entry.id 3LR1 # _exptl.entry_id 3LR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LR1 _cell.length_a 69.736 _cell.length_b 70.386 _cell.length_c 91.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 8 A LYS 5 1_555 A N MSE 9 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 A C MSE 9 A MSE 6 1_555 A N SER 10 A SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C VAL 81 A VAL 78 1_555 A N MSE 82 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 82 A MSE 79 1_555 A N TYR 83 A TYR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C GLY 153 A GLY 150 1_555 A N MSE 154 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 154 A MSE 151 1_555 A N GLY 155 A GLY 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C THR 159 A THR 156 1_555 A N MSE 160 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 A C MSE 160 A MSE 157 1_555 A N ALA 161 A ALA 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C ILE 201 A ILE 198 1_555 A N MSE 202 A MSE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 A C MSE 202 A MSE 199 1_555 A N ALA 203 A ALA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 A C ALA 217 A ALA 214 1_555 A N MSE 218 A MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 218 A MSE 215 1_555 A N LYS 219 A LYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3LR1 _atom_sites.fract_transf_matrix[1][1] 0.01434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W A 1 234 234 W W . C 2 W A 1 235 235 W W . D 3 GOL A 1 236 236 GOL GOL . E 4 HOH A 1 237 237 HOH HOH . E 4 HOH A 2 238 238 HOH HOH . E 4 HOH A 3 239 239 HOH HOH . E 4 HOH A 4 240 240 HOH HOH . E 4 HOH A 5 241 241 HOH HOH . E 4 HOH A 6 242 242 HOH HOH . E 4 HOH A 7 243 243 HOH HOH . E 4 HOH A 8 244 244 HOH HOH . E 4 HOH A 9 245 245 HOH HOH . E 4 HOH A 10 246 246 HOH HOH . E 4 HOH A 11 247 247 HOH HOH . E 4 HOH A 12 248 248 HOH HOH . E 4 HOH A 13 249 249 HOH HOH . E 4 HOH A 14 250 250 HOH HOH . E 4 HOH A 15 251 251 HOH HOH . E 4 HOH A 16 252 252 HOH HOH . E 4 HOH A 17 253 253 HOH HOH . E 4 HOH A 18 254 254 HOH HOH . E 4 HOH A 19 255 255 HOH HOH . E 4 HOH A 20 256 256 HOH HOH . E 4 HOH A 21 257 257 HOH HOH . E 4 HOH A 22 258 258 HOH HOH . E 4 HOH A 23 259 259 HOH HOH . E 4 HOH A 24 260 260 HOH HOH . E 4 HOH A 25 261 261 HOH HOH . E 4 HOH A 26 262 262 HOH HOH . E 4 HOH A 27 263 263 HOH HOH . E 4 HOH A 28 264 264 HOH HOH . E 4 HOH A 29 265 265 HOH HOH . E 4 HOH A 30 266 266 HOH HOH . E 4 HOH A 31 267 267 HOH HOH . E 4 HOH A 32 268 268 HOH HOH . E 4 HOH A 33 269 269 HOH HOH . E 4 HOH A 34 270 270 HOH HOH . E 4 HOH A 35 271 271 HOH HOH . E 4 HOH A 36 272 272 HOH HOH . E 4 HOH A 37 273 273 HOH HOH . E 4 HOH A 38 274 274 HOH HOH . E 4 HOH A 39 275 275 HOH HOH . E 4 HOH A 40 276 276 HOH HOH . E 4 HOH A 41 277 277 HOH HOH . E 4 HOH A 42 278 278 HOH HOH . E 4 HOH A 43 279 279 HOH HOH . E 4 HOH A 44 280 280 HOH HOH . E 4 HOH A 45 281 281 HOH HOH . E 4 HOH A 46 282 282 HOH HOH . E 4 HOH A 47 283 283 HOH HOH . E 4 HOH A 48 284 284 HOH HOH . E 4 HOH A 49 285 285 HOH HOH . E 4 HOH A 50 286 286 HOH HOH . E 4 HOH A 51 287 287 HOH HOH . E 4 HOH A 52 288 288 HOH HOH . E 4 HOH A 53 289 289 HOH HOH . E 4 HOH A 54 290 290 HOH HOH . E 4 HOH A 55 291 291 HOH HOH . E 4 HOH A 56 292 292 HOH HOH . E 4 HOH A 57 293 293 HOH HOH . E 4 HOH A 58 294 294 HOH HOH . E 4 HOH A 59 295 295 HOH HOH . E 4 HOH A 60 296 296 HOH HOH . E 4 HOH A 61 297 297 HOH HOH . E 4 HOH A 62 298 298 HOH HOH . E 4 HOH A 63 299 299 HOH HOH . E 4 HOH A 64 300 300 HOH HOH . E 4 HOH A 65 301 301 HOH HOH . E 4 HOH A 66 302 302 HOH HOH . E 4 HOH A 67 303 303 HOH HOH . E 4 HOH A 68 304 304 HOH HOH . E 4 HOH A 69 305 305 HOH HOH . E 4 HOH A 70 306 306 HOH HOH . E 4 HOH A 71 307 307 HOH HOH . E 4 HOH A 72 308 308 HOH HOH . E 4 HOH A 73 309 309 HOH HOH . E 4 HOH A 74 310 310 HOH HOH . E 4 HOH A 75 311 311 HOH HOH . E 4 HOH A 76 312 312 HOH HOH . E 4 HOH A 77 313 313 HOH HOH . E 4 HOH A 78 314 314 HOH HOH . E 4 HOH A 79 315 315 HOH HOH . E 4 HOH A 80 316 316 HOH HOH . E 4 HOH A 81 317 317 HOH HOH . E 4 HOH A 82 318 318 HOH HOH . E 4 HOH A 83 319 319 HOH HOH . E 4 HOH A 84 320 320 HOH HOH . E 4 HOH A 85 321 321 HOH HOH . E 4 HOH A 86 322 322 HOH HOH . E 4 HOH A 87 323 323 HOH HOH . E 4 HOH A 88 324 324 HOH HOH . E 4 HOH A 89 325 325 HOH HOH . E 4 HOH A 90 326 326 HOH HOH . E 4 HOH A 91 327 327 HOH HOH . E 4 HOH A 92 328 328 HOH HOH . E 4 HOH A 93 329 329 HOH HOH . E 4 HOH A 94 330 330 HOH HOH . E 4 HOH A 95 331 331 HOH HOH . E 4 HOH A 96 332 332 HOH HOH . E 4 HOH A 97 333 333 HOH HOH . E 4 HOH A 98 334 334 HOH HOH . E 4 HOH A 99 335 335 HOH HOH . E 4 HOH A 100 336 336 HOH HOH . E 4 HOH A 101 337 337 HOH HOH . E 4 HOH A 102 338 338 HOH HOH . E 4 HOH A 103 339 339 HOH HOH . E 4 HOH A 104 340 340 HOH HOH . E 4 HOH A 105 341 341 HOH HOH . E 4 HOH A 106 342 342 HOH HOH . E 4 HOH A 107 343 343 HOH HOH . E 4 HOH A 108 344 344 HOH HOH . E 4 HOH A 109 345 345 HOH HOH . E 4 HOH A 110 346 346 HOH HOH . E 4 HOH A 111 347 347 HOH HOH . E 4 HOH A 112 348 348 HOH HOH . E 4 HOH A 113 349 349 HOH HOH . E 4 HOH A 114 350 350 HOH HOH . E 4 HOH A 115 351 351 HOH HOH . E 4 HOH A 116 352 352 HOH HOH . E 4 HOH A 117 353 353 HOH HOH . E 4 HOH A 118 354 354 HOH HOH . E 4 HOH A 119 355 355 HOH HOH . E 4 HOH A 120 356 356 HOH HOH . E 4 HOH A 121 357 357 HOH HOH . E 4 HOH A 122 358 358 HOH HOH . E 4 HOH A 123 359 359 HOH HOH . E 4 HOH A 124 360 360 HOH HOH . E 4 HOH A 125 361 361 HOH HOH . E 4 HOH A 126 362 362 HOH HOH . E 4 HOH A 127 363 363 HOH HOH . E 4 HOH A 128 364 364 HOH HOH . E 4 HOH A 129 365 365 HOH HOH . E 4 HOH A 130 366 366 HOH HOH . E 4 HOH A 131 367 367 HOH HOH . E 4 HOH A 132 368 368 HOH HOH . E 4 HOH A 133 369 369 HOH HOH . E 4 HOH A 134 370 370 HOH HOH . E 4 HOH A 135 371 371 HOH HOH . E 4 HOH A 136 372 372 HOH HOH . E 4 HOH A 137 373 373 HOH HOH . E 4 HOH A 138 374 374 HOH HOH . E 4 HOH A 139 375 375 HOH HOH . E 4 HOH A 140 376 376 HOH HOH . E 4 HOH A 141 377 377 HOH HOH . E 4 HOH A 142 378 378 HOH HOH . E 4 HOH A 143 379 379 HOH HOH . E 4 HOH A 144 380 380 HOH HOH . E 4 HOH A 145 381 381 HOH HOH . E 4 HOH A 146 382 382 HOH HOH . E 4 HOH A 147 383 383 HOH HOH . E 4 HOH A 148 384 384 HOH HOH . E 4 HOH A 149 385 385 HOH HOH . E 4 HOH A 150 386 386 HOH HOH . E 4 HOH A 151 387 387 HOH HOH . E 4 HOH A 152 388 388 HOH HOH . E 4 HOH A 153 389 389 HOH HOH . E 4 HOH A 154 390 390 HOH HOH . E 4 HOH A 155 391 391 HOH HOH . E 4 HOH A 156 392 392 HOH HOH . E 4 HOH A 157 393 393 HOH HOH . E 4 HOH A 158 394 394 HOH HOH . E 4 HOH A 159 395 395 HOH HOH . E 4 HOH A 160 396 396 HOH HOH . E 4 HOH A 161 397 397 HOH HOH . E 4 HOH A 162 398 398 HOH HOH . E 4 HOH A 163 399 399 HOH HOH . E 4 HOH A 164 400 400 HOH HOH . E 4 HOH A 165 401 401 HOH HOH . E 4 HOH A 166 402 402 HOH HOH . E 4 HOH A 167 403 403 HOH HOH . E 4 HOH A 168 404 404 HOH HOH . E 4 HOH A 169 405 405 HOH HOH . E 4 HOH A 170 406 406 HOH HOH . E 4 HOH A 171 407 407 HOH HOH . E 4 HOH A 172 408 408 HOH HOH . E 4 HOH A 173 409 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 1.106 24.606 11.893 1 26.9 ? C1 GOL 236 A 1 HETATM 2 O O1 GOL . . . D 3 0.626 24.336 10.61 1 36.97 ? O1 GOL 236 A 1 HETATM 3 C C2 GOL . . . D 3 -0.171 24.832 12.56 1 32.21 ? C2 GOL 236 A 1 HETATM 4 O O2 GOL . . . D 3 -1.145 23.92 11.976 1 42.75 ? O2 GOL 236 A 1 HETATM 5 C C3 GOL . . . D 3 -0.053 24.725 14.033 1 30.12 ? C3 GOL 236 A 1 HETATM 6 O O3 GOL . . . D 3 0.072 23.529 14.537 1 28.87 ? O3 GOL 236 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #