data_3LR9 # _model_server_result.job_id 0UWy6vScr3ivor3jtEOmGA _model_server_result.datetime_utc '2024-12-27 00:53:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":157}' # _entry.id 3LR9 # _exptl.entry_id 3LR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.64 _cell.angle_gamma 90 _cell.entry_id 3LR9 _cell.length_a 35.327 _cell.length_b 28.691 _cell.length_c 62.911 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 C O1 NO2 . A NO2 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 B FE HEM . A HEM 154 1_555 C N NO2 . A NO2 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 306 n n N O2 NO2 sing 307 n n # _atom_sites.entry_id 3LR9 _atom_sites.fract_transf_matrix[1][1] 0.028307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007925 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 NO2 A 1 155 1 NO2 NO2 . D 3 NO2 A 1 156 2 NO2 NO2 . E 3 NO2 A 1 157 3 NO2 NO2 . F 3 NO2 A 1 158 4 NO2 NO2 . G 4 SO4 A 1 159 5 SO4 SO4 . H 4 SO4 A 1 160 6 SO4 SO4 . I 5 HOH A 1 161 1 HOH HOH . I 5 HOH A 2 162 2 HOH HOH . I 5 HOH A 3 163 3 HOH HOH . I 5 HOH A 4 164 4 HOH HOH . I 5 HOH A 5 165 5 HOH HOH . I 5 HOH A 6 166 6 HOH HOH . I 5 HOH A 7 167 7 HOH HOH . I 5 HOH A 8 168 8 HOH HOH . I 5 HOH A 9 169 9 HOH HOH . I 5 HOH A 10 170 10 HOH HOH . I 5 HOH A 11 171 11 HOH HOH . I 5 HOH A 12 172 12 HOH HOH . I 5 HOH A 13 173 13 HOH HOH . I 5 HOH A 14 174 14 HOH HOH . I 5 HOH A 15 175 15 HOH HOH . I 5 HOH A 16 176 16 HOH HOH . I 5 HOH A 17 177 17 HOH HOH . I 5 HOH A 18 178 18 HOH HOH . I 5 HOH A 19 179 19 HOH HOH . I 5 HOH A 20 180 20 HOH HOH . I 5 HOH A 21 181 21 HOH HOH . I 5 HOH A 22 182 22 HOH HOH . I 5 HOH A 23 183 23 HOH HOH . I 5 HOH A 24 184 24 HOH HOH . I 5 HOH A 25 185 25 HOH HOH . I 5 HOH A 26 186 26 HOH HOH . I 5 HOH A 27 187 27 HOH HOH . I 5 HOH A 28 188 28 HOH HOH . I 5 HOH A 29 189 29 HOH HOH . I 5 HOH A 30 190 30 HOH HOH . I 5 HOH A 31 191 31 HOH HOH . I 5 HOH A 32 192 32 HOH HOH . I 5 HOH A 33 193 33 HOH HOH . I 5 HOH A 34 194 34 HOH HOH . I 5 HOH A 35 195 35 HOH HOH . I 5 HOH A 36 196 36 HOH HOH . I 5 HOH A 37 197 37 HOH HOH . I 5 HOH A 38 198 38 HOH HOH . I 5 HOH A 39 199 39 HOH HOH . I 5 HOH A 40 200 40 HOH HOH . I 5 HOH A 41 201 41 HOH HOH . I 5 HOH A 42 202 42 HOH HOH . I 5 HOH A 43 203 43 HOH HOH . I 5 HOH A 44 204 44 HOH HOH . I 5 HOH A 45 205 45 HOH HOH . I 5 HOH A 46 206 46 HOH HOH . I 5 HOH A 47 207 47 HOH HOH . I 5 HOH A 48 208 48 HOH HOH . I 5 HOH A 49 209 49 HOH HOH . I 5 HOH A 50 210 50 HOH HOH . I 5 HOH A 51 211 51 HOH HOH . I 5 HOH A 52 212 52 HOH HOH . I 5 HOH A 53 213 53 HOH HOH . I 5 HOH A 54 214 54 HOH HOH . I 5 HOH A 55 215 55 HOH HOH . I 5 HOH A 56 216 56 HOH HOH . I 5 HOH A 57 217 57 HOH HOH . I 5 HOH A 58 218 58 HOH HOH . I 5 HOH A 59 219 59 HOH HOH . I 5 HOH A 60 220 60 HOH HOH . I 5 HOH A 61 221 61 HOH HOH . I 5 HOH A 62 222 62 HOH HOH . I 5 HOH A 63 223 63 HOH HOH . I 5 HOH A 64 224 64 HOH HOH . I 5 HOH A 65 225 65 HOH HOH . I 5 HOH A 66 226 66 HOH HOH . I 5 HOH A 67 227 67 HOH HOH . I 5 HOH A 68 228 68 HOH HOH . I 5 HOH A 69 229 69 HOH HOH . I 5 HOH A 70 230 70 HOH HOH . I 5 HOH A 71 231 71 HOH HOH . I 5 HOH A 72 232 72 HOH HOH . I 5 HOH A 73 233 73 HOH HOH . I 5 HOH A 74 234 74 HOH HOH . I 5 HOH A 75 235 75 HOH HOH . I 5 HOH A 76 236 76 HOH HOH . I 5 HOH A 77 237 77 HOH HOH . I 5 HOH A 78 238 78 HOH HOH . I 5 HOH A 79 239 79 HOH HOH . I 5 HOH A 80 240 80 HOH HOH . I 5 HOH A 81 241 81 HOH HOH . I 5 HOH A 82 242 82 HOH HOH . I 5 HOH A 83 243 83 HOH HOH . I 5 HOH A 84 244 84 HOH HOH . I 5 HOH A 85 245 85 HOH HOH . I 5 HOH A 86 246 86 HOH HOH . I 5 HOH A 87 247 87 HOH HOH . I 5 HOH A 88 248 88 HOH HOH . I 5 HOH A 89 249 89 HOH HOH . I 5 HOH A 90 250 90 HOH HOH . I 5 HOH A 91 251 91 HOH HOH . I 5 HOH A 92 252 92 HOH HOH . I 5 HOH A 93 253 93 HOH HOH . I 5 HOH A 94 254 94 HOH HOH . I 5 HOH A 95 255 95 HOH HOH . I 5 HOH A 96 256 96 HOH HOH . I 5 HOH A 97 257 97 HOH HOH . I 5 HOH A 98 258 98 HOH HOH . I 5 HOH A 99 259 99 HOH HOH . I 5 HOH A 100 260 100 HOH HOH . I 5 HOH A 101 261 101 HOH HOH . I 5 HOH A 102 262 102 HOH HOH . I 5 HOH A 103 263 103 HOH HOH . I 5 HOH A 104 264 104 HOH HOH . I 5 HOH A 105 265 105 HOH HOH . I 5 HOH A 106 266 106 HOH HOH . I 5 HOH A 107 267 107 HOH HOH . I 5 HOH A 108 268 108 HOH HOH . I 5 HOH A 109 269 109 HOH HOH . I 5 HOH A 110 270 110 HOH HOH . I 5 HOH A 111 271 111 HOH HOH . I 5 HOH A 112 272 112 HOH HOH . I 5 HOH A 113 273 113 HOH HOH . I 5 HOH A 114 274 114 HOH HOH . I 5 HOH A 115 275 115 HOH HOH . I 5 HOH A 116 276 116 HOH HOH . I 5 HOH A 117 277 117 HOH HOH . I 5 HOH A 118 278 118 HOH HOH . I 5 HOH A 119 279 119 HOH HOH . I 5 HOH A 120 280 120 HOH HOH . I 5 HOH A 121 281 121 HOH HOH . I 5 HOH A 122 282 122 HOH HOH . I 5 HOH A 123 283 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . E 3 -16.732 -9.423 3.435 1 23.09 ? N NO2 157 A 1 HETATM 2 O O1 NO2 . . . E 3 -17.936 -9.592 3.694 1 24.89 ? O1 NO2 157 A 1 HETATM 3 O O2 NO2 . . . E 3 -16.438 -8.31 2.966 1 33.86 ? O2 NO2 157 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 3 #