data_3LRD # _model_server_result.job_id GBVXPjK5GWDMfoirFUImMQ _model_server_result.datetime_utc '2024-11-05 00:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":138}' # _entry.id 3LRD # _exptl.entry_id 3LRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LRD _cell.length_a 68.383 _cell.length_b 68.383 _cell.length_c 97.781 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 233 n n C1 C2 PGE sing 234 n n C1 H1 PGE sing 235 n n C1 H12 PGE sing 236 n n O1 HO1 PGE sing 237 n n C2 O2 PGE sing 238 n n C2 H2 PGE sing 239 n n C2 H22 PGE sing 240 n n O2 C3 PGE sing 241 n n C3 C4 PGE sing 242 n n C3 H3 PGE sing 243 n n C3 H32 PGE sing 244 n n C4 O3 PGE sing 245 n n C4 H4 PGE sing 246 n n C4 H42 PGE sing 247 n n O4 C6 PGE sing 248 n n O4 HO4 PGE sing 249 n n C6 C5 PGE sing 250 n n C6 H6 PGE sing 251 n n C6 H62 PGE sing 252 n n C5 O3 PGE sing 253 n n C5 H5 PGE sing 254 n n C5 H52 PGE sing 255 n n # _atom_sites.entry_id 3LRD _atom_sites.fract_transf_matrix[1][1] 0.014623 _atom_sites.fract_transf_matrix[1][2] 0.008443 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 1397 1397 EDO EDO . D 2 EDO B 1 1397 1397 EDO EDO . E 3 PGE B 1 138 1 PGE PGE . F 4 HOH A 1 138 14 HOH HOH . F 4 HOH A 2 139 36 HOH HOH . F 4 HOH A 3 140 43 HOH HOH . F 4 HOH A 4 141 44 HOH HOH . F 4 HOH A 5 142 46 HOH HOH . F 4 HOH A 6 143 47 HOH HOH . F 4 HOH A 7 144 56 HOH HOH . F 4 HOH A 8 145 61 HOH HOH . F 4 HOH A 9 146 65 HOH HOH . F 4 HOH A 10 147 69 HOH HOH . F 4 HOH A 11 148 76 HOH HOH . F 4 HOH A 12 149 79 HOH HOH . F 4 HOH A 13 150 91 HOH HOH . F 4 HOH A 14 151 92 HOH HOH . F 4 HOH A 15 152 101 HOH HOH . F 4 HOH A 16 153 4 HOH HOH . F 4 HOH A 17 154 6 HOH HOH . G 4 HOH B 1 139 12 HOH HOH . G 4 HOH B 2 140 15 HOH HOH . G 4 HOH B 3 141 18 HOH HOH . G 4 HOH B 4 142 20 HOH HOH . G 4 HOH B 5 143 21 HOH HOH . G 4 HOH B 6 144 22 HOH HOH . G 4 HOH B 7 145 25 HOH HOH . G 4 HOH B 8 146 26 HOH HOH . G 4 HOH B 9 147 27 HOH HOH . G 4 HOH B 10 148 28 HOH HOH . G 4 HOH B 11 149 34 HOH HOH . G 4 HOH B 12 150 35 HOH HOH . G 4 HOH B 13 151 38 HOH HOH . G 4 HOH B 14 152 40 HOH HOH . G 4 HOH B 15 153 45 HOH HOH . G 4 HOH B 16 154 48 HOH HOH . G 4 HOH B 17 155 50 HOH HOH . G 4 HOH B 18 156 51 HOH HOH . G 4 HOH B 19 157 55 HOH HOH . G 4 HOH B 20 158 59 HOH HOH . G 4 HOH B 21 159 60 HOH HOH . G 4 HOH B 22 160 64 HOH HOH . G 4 HOH B 23 161 68 HOH HOH . G 4 HOH B 24 162 70 HOH HOH . G 4 HOH B 25 163 90 HOH HOH . G 4 HOH B 26 164 93 HOH HOH . G 4 HOH B 27 165 94 HOH HOH . G 4 HOH B 28 166 95 HOH HOH . G 4 HOH B 29 167 96 HOH HOH . G 4 HOH B 30 168 97 HOH HOH . G 4 HOH B 31 169 98 HOH HOH . G 4 HOH B 32 170 99 HOH HOH . G 4 HOH B 33 171 100 HOH HOH . G 4 HOH B 34 172 102 HOH HOH . G 4 HOH B 35 173 103 HOH HOH . G 4 HOH B 36 174 104 HOH HOH . G 4 HOH B 37 175 5 HOH HOH . G 4 HOH B 38 176 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . E 3 -11.176 25.185 -15.01 0.5 26.39 ? C1 PGE 138 B 1 HETATM 2 O O1 PGE . . . E 3 -9.941 24.56 -14.631 0.5 22.68 ? O1 PGE 138 B 1 HETATM 3 C C2 PGE . . . E 3 -12.329 24.522 -14.236 0.5 25.86 ? C2 PGE 138 B 1 HETATM 4 O O2 PGE . . . E 3 -13.465 25.366 -14.088 0.5 27.01 ? O2 PGE 138 B 1 HETATM 5 C C3 PGE . . . E 3 -14.589 24.987 -14.912 0.5 30.34 ? C3 PGE 138 B 1 HETATM 6 C C4 PGE . . . E 3 -14.883 26.054 -15.975 0.5 29.51 ? C4 PGE 138 B 1 HETATM 7 O O4 PGE . . . E 3 -16.551 22.389 -18.361 0.5 37.06 ? O4 PGE 138 B 1 HETATM 8 C C6 PGE . . . E 3 -15.589 23.452 -18.609 0.5 33.38 ? C6 PGE 138 B 1 HETATM 9 C C5 PGE . . . E 3 -15.132 24.095 -17.292 0.5 33.18 ? C5 PGE 138 B 1 HETATM 10 O O3 PGE . . . E 3 -15.481 25.493 -17.154 0.5 31.37 ? O3 PGE 138 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #