data_3LRE # _model_server_result.job_id tGfXebedKcpVxvcoWGXbGA _model_server_result.datetime_utc '2024-11-05 00:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3LRE # _exptl.entry_id 3LRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LRE _cell.length_a 69.42 _cell.length_b 79.744 _cell.length_c 140.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -69.42 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 120 A THR 120 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 G O HOH . A HOH 446 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 G O HOH . A HOH 450 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc4 G O HOH . A HOH 457 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 D O2B ADP . A ADP 500 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 B OG1 THR 120 B THR 120 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc7 H O HOH . B HOH 382 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 H O HOH . B HOH 399 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 H O HOH . B HOH 484 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 H O HOH . B HOH 494 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc11 F O2B ADP . B ADP 500 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LRE _atom_sites.fract_transf_matrix[1][1] 0.014405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 3 ADP A 1 500 500 ADP ADP . E 2 MG B 1 501 501 MG MG . F 3 ADP B 1 500 500 ADP ADP . G 4 HOH A 1 356 3 HOH HOH . G 4 HOH A 2 357 5 HOH HOH . G 4 HOH A 3 358 7 HOH HOH . G 4 HOH A 4 359 8 HOH HOH . G 4 HOH A 5 360 9 HOH HOH . G 4 HOH A 6 361 12 HOH HOH . G 4 HOH A 7 362 14 HOH HOH . G 4 HOH A 8 363 15 HOH HOH . G 4 HOH A 9 364 19 HOH HOH . G 4 HOH A 10 365 21 HOH HOH . G 4 HOH A 11 366 22 HOH HOH . G 4 HOH A 12 367 25 HOH HOH . G 4 HOH A 13 368 29 HOH HOH . G 4 HOH A 14 369 36 HOH HOH . G 4 HOH A 15 370 39 HOH HOH . G 4 HOH A 16 371 46 HOH HOH . G 4 HOH A 17 372 52 HOH HOH . G 4 HOH A 18 373 56 HOH HOH . G 4 HOH A 19 374 58 HOH HOH . G 4 HOH A 20 375 62 HOH HOH . G 4 HOH A 21 376 63 HOH HOH . G 4 HOH A 22 377 64 HOH HOH . G 4 HOH A 23 378 66 HOH HOH . G 4 HOH A 24 379 67 HOH HOH . G 4 HOH A 25 380 68 HOH HOH . G 4 HOH A 26 381 70 HOH HOH . G 4 HOH A 27 382 71 HOH HOH . G 4 HOH A 28 383 73 HOH HOH . G 4 HOH A 29 384 76 HOH HOH . G 4 HOH A 30 385 77 HOH HOH . G 4 HOH A 31 386 84 HOH HOH . G 4 HOH A 32 387 85 HOH HOH . G 4 HOH A 33 388 86 HOH HOH . G 4 HOH A 34 389 87 HOH HOH . G 4 HOH A 35 390 89 HOH HOH . G 4 HOH A 36 391 90 HOH HOH . G 4 HOH A 37 392 94 HOH HOH . G 4 HOH A 38 393 99 HOH HOH . G 4 HOH A 39 394 100 HOH HOH . G 4 HOH A 40 395 101 HOH HOH . G 4 HOH A 41 396 103 HOH HOH . G 4 HOH A 42 397 106 HOH HOH . G 4 HOH A 43 398 108 HOH HOH . G 4 HOH A 44 399 112 HOH HOH . G 4 HOH A 45 400 113 HOH HOH . G 4 HOH A 46 401 116 HOH HOH . G 4 HOH A 47 402 117 HOH HOH . G 4 HOH A 48 403 119 HOH HOH . G 4 HOH A 49 404 122 HOH HOH . G 4 HOH A 50 405 124 HOH HOH . G 4 HOH A 51 406 126 HOH HOH . G 4 HOH A 52 407 127 HOH HOH . G 4 HOH A 53 408 132 HOH HOH . G 4 HOH A 54 409 133 HOH HOH . G 4 HOH A 55 410 136 HOH HOH . G 4 HOH A 56 411 140 HOH HOH . G 4 HOH A 57 412 141 HOH HOH . G 4 HOH A 58 413 143 HOH HOH . G 4 HOH A 59 414 147 HOH HOH . G 4 HOH A 60 415 148 HOH HOH . G 4 HOH A 61 416 149 HOH HOH . G 4 HOH A 62 417 150 HOH HOH . G 4 HOH A 63 418 151 HOH HOH . G 4 HOH A 64 419 152 HOH HOH . G 4 HOH A 65 420 157 HOH HOH . G 4 HOH A 66 421 160 HOH HOH . G 4 HOH A 67 422 162 HOH HOH . G 4 HOH A 68 423 168 HOH HOH . G 4 HOH A 69 424 170 HOH HOH . G 4 HOH A 70 425 171 HOH HOH . G 4 HOH A 71 426 186 HOH HOH . G 4 HOH A 72 427 189 HOH HOH . G 4 HOH A 73 428 194 HOH HOH . G 4 HOH A 74 429 197 HOH HOH . G 4 HOH A 75 430 203 HOH HOH . G 4 HOH A 76 431 211 HOH HOH . G 4 HOH A 77 432 216 HOH HOH . G 4 HOH A 78 433 222 HOH HOH . G 4 HOH A 79 434 224 HOH HOH . G 4 HOH A 80 435 226 HOH HOH . G 4 HOH A 81 436 227 HOH HOH . G 4 HOH A 82 437 228 HOH HOH . G 4 HOH A 83 438 231 HOH HOH . G 4 HOH A 84 439 232 HOH HOH . G 4 HOH A 85 440 234 HOH HOH . G 4 HOH A 86 441 237 HOH HOH . G 4 HOH A 87 442 242 HOH HOH . G 4 HOH A 88 443 244 HOH HOH . G 4 HOH A 89 444 256 HOH HOH . G 4 HOH A 90 445 257 HOH HOH . G 4 HOH A 91 446 264 HOH HOH . G 4 HOH A 92 447 265 HOH HOH . G 4 HOH A 93 448 266 HOH HOH . G 4 HOH A 94 449 268 HOH HOH . G 4 HOH A 95 450 274 HOH HOH . G 4 HOH A 96 451 275 HOH HOH . G 4 HOH A 97 452 282 HOH HOH . G 4 HOH A 98 453 298 HOH HOH . G 4 HOH A 99 454 300 HOH HOH . G 4 HOH A 100 455 301 HOH HOH . G 4 HOH A 101 456 310 HOH HOH . G 4 HOH A 102 457 311 HOH HOH . G 4 HOH A 103 458 313 HOH HOH . G 4 HOH A 104 459 325 HOH HOH . G 4 HOH A 105 489 306 HOH HOH . H 4 HOH B 1 356 1 HOH HOH . H 4 HOH B 2 357 2 HOH HOH . H 4 HOH B 3 358 4 HOH HOH . H 4 HOH B 4 359 6 HOH HOH . H 4 HOH B 5 360 10 HOH HOH . H 4 HOH B 6 361 11 HOH HOH . H 4 HOH B 7 362 16 HOH HOH . H 4 HOH B 8 363 17 HOH HOH . H 4 HOH B 9 364 18 HOH HOH . H 4 HOH B 10 365 20 HOH HOH . H 4 HOH B 11 366 23 HOH HOH . H 4 HOH B 12 367 26 HOH HOH . H 4 HOH B 13 368 27 HOH HOH . H 4 HOH B 14 369 28 HOH HOH . H 4 HOH B 15 370 30 HOH HOH . H 4 HOH B 16 371 31 HOH HOH . H 4 HOH B 17 372 32 HOH HOH . H 4 HOH B 18 373 33 HOH HOH . H 4 HOH B 19 374 34 HOH HOH . H 4 HOH B 20 375 35 HOH HOH . H 4 HOH B 21 376 37 HOH HOH . H 4 HOH B 22 377 40 HOH HOH . H 4 HOH B 23 378 41 HOH HOH . H 4 HOH B 24 379 42 HOH HOH . H 4 HOH B 25 380 43 HOH HOH . H 4 HOH B 26 381 44 HOH HOH . H 4 HOH B 27 382 45 HOH HOH . H 4 HOH B 28 383 47 HOH HOH . H 4 HOH B 29 384 49 HOH HOH . H 4 HOH B 30 385 50 HOH HOH . H 4 HOH B 31 386 53 HOH HOH . H 4 HOH B 32 387 54 HOH HOH . H 4 HOH B 33 388 55 HOH HOH . H 4 HOH B 34 389 57 HOH HOH . H 4 HOH B 35 390 59 HOH HOH . H 4 HOH B 36 391 60 HOH HOH . H 4 HOH B 37 392 61 HOH HOH . H 4 HOH B 38 393 65 HOH HOH . H 4 HOH B 39 394 69 HOH HOH . H 4 HOH B 40 395 72 HOH HOH . H 4 HOH B 41 396 74 HOH HOH . H 4 HOH B 42 397 78 HOH HOH . H 4 HOH B 43 398 79 HOH HOH . H 4 HOH B 44 399 81 HOH HOH . H 4 HOH B 45 400 83 HOH HOH . H 4 HOH B 46 401 88 HOH HOH . H 4 HOH B 47 402 92 HOH HOH . H 4 HOH B 48 403 93 HOH HOH . H 4 HOH B 49 404 95 HOH HOH . H 4 HOH B 50 405 96 HOH HOH . H 4 HOH B 51 406 97 HOH HOH . H 4 HOH B 52 407 98 HOH HOH . H 4 HOH B 53 408 102 HOH HOH . H 4 HOH B 54 409 109 HOH HOH . H 4 HOH B 55 410 111 HOH HOH . H 4 HOH B 56 411 115 HOH HOH . H 4 HOH B 57 412 120 HOH HOH . H 4 HOH B 58 413 121 HOH HOH . H 4 HOH B 59 414 128 HOH HOH . H 4 HOH B 60 415 135 HOH HOH . H 4 HOH B 61 416 137 HOH HOH . H 4 HOH B 62 417 139 HOH HOH . H 4 HOH B 63 418 142 HOH HOH . H 4 HOH B 64 419 144 HOH HOH . H 4 HOH B 65 420 153 HOH HOH . H 4 HOH B 66 421 154 HOH HOH . H 4 HOH B 67 422 155 HOH HOH . H 4 HOH B 68 423 156 HOH HOH . H 4 HOH B 69 424 161 HOH HOH . H 4 HOH B 70 425 163 HOH HOH . H 4 HOH B 71 426 164 HOH HOH . H 4 HOH B 72 427 166 HOH HOH . H 4 HOH B 73 428 167 HOH HOH . H 4 HOH B 74 429 169 HOH HOH . H 4 HOH B 75 430 174 HOH HOH . H 4 HOH B 76 431 175 HOH HOH . H 4 HOH B 77 432 177 HOH HOH . H 4 HOH B 78 433 180 HOH HOH . H 4 HOH B 79 434 182 HOH HOH . H 4 HOH B 80 435 183 HOH HOH . H 4 HOH B 81 436 184 HOH HOH . H 4 HOH B 82 437 185 HOH HOH . H 4 HOH B 83 438 187 HOH HOH . H 4 HOH B 84 439 190 HOH HOH . H 4 HOH B 85 440 192 HOH HOH . H 4 HOH B 86 441 193 HOH HOH . H 4 HOH B 87 442 196 HOH HOH . H 4 HOH B 88 443 198 HOH HOH . H 4 HOH B 89 444 199 HOH HOH . H 4 HOH B 90 445 200 HOH HOH . H 4 HOH B 91 446 204 HOH HOH . H 4 HOH B 92 447 205 HOH HOH . H 4 HOH B 93 448 207 HOH HOH . H 4 HOH B 94 449 208 HOH HOH . H 4 HOH B 95 450 212 HOH HOH . H 4 HOH B 96 451 213 HOH HOH . H 4 HOH B 97 452 214 HOH HOH . H 4 HOH B 98 453 215 HOH HOH . H 4 HOH B 99 454 217 HOH HOH . H 4 HOH B 100 455 218 HOH HOH . H 4 HOH B 101 456 219 HOH HOH . H 4 HOH B 102 457 220 HOH HOH . H 4 HOH B 103 458 221 HOH HOH . H 4 HOH B 104 459 223 HOH HOH . H 4 HOH B 105 460 225 HOH HOH . H 4 HOH B 106 461 229 HOH HOH . H 4 HOH B 107 462 233 HOH HOH . H 4 HOH B 108 463 235 HOH HOH . H 4 HOH B 109 464 236 HOH HOH . H 4 HOH B 110 465 238 HOH HOH . H 4 HOH B 111 466 239 HOH HOH . H 4 HOH B 112 467 241 HOH HOH . H 4 HOH B 113 468 249 HOH HOH . H 4 HOH B 114 469 250 HOH HOH . H 4 HOH B 115 470 252 HOH HOH . H 4 HOH B 116 471 255 HOH HOH . H 4 HOH B 117 472 258 HOH HOH . H 4 HOH B 118 473 260 HOH HOH . H 4 HOH B 119 474 269 HOH HOH . H 4 HOH B 120 475 272 HOH HOH . H 4 HOH B 121 476 276 HOH HOH . H 4 HOH B 122 477 277 HOH HOH . H 4 HOH B 123 478 278 HOH HOH . H 4 HOH B 124 479 279 HOH HOH . H 4 HOH B 125 480 280 HOH HOH . H 4 HOH B 126 481 283 HOH HOH . H 4 HOH B 127 482 284 HOH HOH . H 4 HOH B 128 483 290 HOH HOH . H 4 HOH B 129 484 291 HOH HOH . H 4 HOH B 130 485 296 HOH HOH . H 4 HOH B 131 486 297 HOH HOH . H 4 HOH B 132 487 299 HOH HOH . H 4 HOH B 133 488 302 HOH HOH . H 4 HOH B 134 490 308 HOH HOH . H 4 HOH B 135 491 309 HOH HOH . H 4 HOH B 136 492 318 HOH HOH . H 4 HOH B 137 493 320 HOH HOH . H 4 HOH B 138 494 321 HOH HOH . H 4 HOH B 139 495 328 HOH HOH . H 4 HOH B 140 496 329 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 66.884 _atom_site.Cartn_y 75.922 _atom_site.Cartn_z 5.087 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #