data_3LRN # _model_server_result.job_id ujN17IOy32gwAswT3CDCOQ _model_server_result.datetime_utc '2024-11-22 00:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lrn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3LRN # _exptl.entry_id 3LRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LRN _cell.length_a 41.49 _cell.length_b 96.33 _cell.length_c 103.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' GTP 1 C GTP 0 1_555 C P G 2 C G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale2 D O3' GTP 1 D GTP 0 1_555 D P G 2 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 8 A CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 11 A CYS 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 62 A CYS 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 67 A CYS 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 F ZN ZN . B ZN 2 1_555 B SG CYS 8 B CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc6 F ZN ZN . B ZN 2 1_555 B SG CYS 11 B CYS 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 F ZN ZN . B ZN 2 1_555 B SG CYS 62 B CYS 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 F ZN ZN . B ZN 2 1_555 B SG CYS 67 B CYS 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? hydrog 'GTP-C PAIR' hydrog1 C N1 GTP 1 C GTP 0 1_555 D N3 C 14 D C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N1 G 2 C G 1 1_555 D N3 C 13 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N2 G 2 C G 1 1_555 D O2 C 13 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O6 G 2 C G 1 1_555 D N4 C 13 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N3 C 3 C C 2 1_555 D N1 G 12 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N4 C 3 C C 2 1_555 D O6 G 12 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O2 C 3 C C 2 1_555 D N2 G 12 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 G 4 C G 3 1_555 D N3 C 11 D C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 G 4 C G 3 1_555 D O2 C 11 D C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 G 4 C G 3 1_555 D N4 C 11 D C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 C 5 C C 4 1_555 D N1 G 10 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N4 C 5 C C 4 1_555 D O6 G 10 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O2 C 5 C C 4 1_555 D N2 G 10 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 G 6 C G 5 1_555 D N3 C 9 D C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N2 G 6 C G 5 1_555 D O2 C 9 D C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O6 G 6 C G 5 1_555 D N4 C 9 D C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 C 7 C C 6 1_555 D N1 G 8 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N4 C 7 C C 6 1_555 D O6 G 8 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O2 C 7 C C 6 1_555 D N2 G 8 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 G 8 C G 7 1_555 D N3 C 7 D C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N2 G 8 C G 7 1_555 D O2 C 7 D C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O6 G 8 C G 7 1_555 D N4 C 7 D C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog23 C O2 C 9 C C 8 1_555 D N2 G 6 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N1 G 10 C G 9 1_555 D N3 C 5 D C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N2 G 10 C G 9 1_555 D O2 C 5 D C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O6 G 10 C G 9 1_555 D N4 C 5 D C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 C 11 C C 10 1_555 D N1 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 C 11 C C 10 1_555 D O6 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 C 11 C C 10 1_555 D N2 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N1 G 12 C G 11 1_555 D N3 C 3 D C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N2 G 12 C G 11 1_555 D O2 C 3 D C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O6 G 12 C G 11 1_555 D N4 C 3 D C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N3 C 13 C C 12 1_555 D N1 G 2 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N4 C 13 C C 12 1_555 D O6 G 2 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O2 C 13 C C 12 1_555 D N2 G 2 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N3 C 14 C C 13 1_555 D N1 GTP 1 D GTP 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N4 C 14 C C 13 1_555 D O6 GTP 1 D GTP 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O2 C 14 C C 13 1_555 D N2 GTP 1 D GTP 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LRN _atom_sites.fract_transf_matrix[1][1] 0.024102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1 1 ZN ZN . F 3 ZN B 1 2 2 ZN ZN . G 4 HOH A 1 2 2 HOH TIP . G 4 HOH A 2 4 4 HOH TIP . G 4 HOH A 3 8 8 HOH TIP . G 4 HOH A 4 12 12 HOH TIP . G 4 HOH A 5 14 14 HOH TIP . G 4 HOH A 6 15 15 HOH TIP . G 4 HOH A 7 18 18 HOH TIP . G 4 HOH A 8 21 21 HOH TIP . G 4 HOH A 9 25 25 HOH TIP . G 4 HOH A 10 26 26 HOH TIP . G 4 HOH A 11 32 32 HOH TIP . G 4 HOH A 12 39 39 HOH TIP . G 4 HOH A 13 40 40 HOH TIP . G 4 HOH A 14 45 45 HOH TIP . G 4 HOH A 15 46 46 HOH TIP . G 4 HOH A 16 50 50 HOH TIP . G 4 HOH A 17 54 54 HOH TIP . G 4 HOH A 18 924 1 HOH TIP . H 4 HOH B 1 3 3 HOH TIP . H 4 HOH B 2 5 5 HOH TIP . H 4 HOH B 3 6 6 HOH TIP . H 4 HOH B 4 7 7 HOH TIP . H 4 HOH B 5 9 9 HOH TIP . H 4 HOH B 6 10 10 HOH TIP . H 4 HOH B 7 11 11 HOH TIP . H 4 HOH B 8 13 13 HOH TIP . H 4 HOH B 9 16 16 HOH TIP . H 4 HOH B 10 17 17 HOH TIP . H 4 HOH B 11 19 19 HOH TIP . H 4 HOH B 12 23 23 HOH TIP . H 4 HOH B 13 24 24 HOH TIP . H 4 HOH B 14 30 30 HOH TIP . H 4 HOH B 15 31 31 HOH TIP . H 4 HOH B 16 33 33 HOH TIP . H 4 HOH B 17 34 34 HOH TIP . H 4 HOH B 18 35 35 HOH TIP . H 4 HOH B 19 36 36 HOH TIP . H 4 HOH B 20 37 37 HOH TIP . H 4 HOH B 21 44 44 HOH TIP . H 4 HOH B 22 47 47 HOH TIP . H 4 HOH B 23 48 48 HOH TIP . H 4 HOH B 24 51 51 HOH TIP . H 4 HOH B 25 52 52 HOH TIP . H 4 HOH B 26 53 53 HOH TIP . I 4 HOH C 1 20 20 HOH TIP . I 4 HOH C 2 22 22 HOH TIP . I 4 HOH C 3 27 27 HOH TIP . I 4 HOH C 4 38 38 HOH TIP . I 4 HOH C 5 42 42 HOH TIP . J 4 HOH D 1 28 28 HOH TIP . J 4 HOH D 2 29 29 HOH TIP . J 4 HOH D 3 41 41 HOH TIP . J 4 HOH D 4 43 43 HOH TIP . J 4 HOH D 5 49 49 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -49.012 _atom_site.Cartn_y 0.89 _atom_site.Cartn_z -9.066 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #