data_3LSQ # _model_server_result.job_id '_RbgfoOnn0Fw-7y-N1C0DQ' _model_server_result.datetime_utc '2024-11-26 21:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 3LSQ # _exptl.entry_id 3LSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LSQ _cell.length_a 176.016 _cell.length_b 176.016 _cell.length_c 248.259 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 167 A ASN 162 1_555 D NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A OG1 THR 169 A THR 164 1_555 D NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 D NA NA . A NA 600 1_555 E O HOH . A HOH 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 D NA NA . A NA 600 1_555 E O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 D NA NA . A NA 600 1_555 E O HOH . A HOH 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 D NA NA . A NA 600 1_555 E O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LSQ _atom_sites.fract_transf_matrix[1][1] 0.005681 _atom_sites.fract_transf_matrix[1][2] 0.00328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLI A 1 602 602 MLI MLI . D 3 NA A 1 600 600 NA NA . E 4 HOH A 1 801 801 HOH HOH . E 4 HOH A 2 802 802 HOH HOH . E 4 HOH A 3 803 803 HOH HOH . E 4 HOH A 4 804 804 HOH HOH . E 4 HOH A 5 805 805 HOH HOH . E 4 HOH A 6 806 806 HOH HOH . E 4 HOH A 7 807 807 HOH HOH . E 4 HOH A 8 808 808 HOH HOH . E 4 HOH A 9 809 809 HOH HOH . E 4 HOH A 10 810 810 HOH HOH . E 4 HOH A 11 811 811 HOH HOH . E 4 HOH A 12 812 812 HOH HOH . E 4 HOH A 13 813 813 HOH HOH . E 4 HOH A 14 814 814 HOH HOH . E 4 HOH A 15 815 815 HOH HOH . E 4 HOH A 16 816 816 HOH HOH . E 4 HOH A 17 817 817 HOH HOH . E 4 HOH A 18 818 818 HOH HOH . E 4 HOH A 19 819 819 HOH HOH . E 4 HOH A 20 820 820 HOH HOH . E 4 HOH A 21 821 821 HOH HOH . E 4 HOH A 22 822 822 HOH HOH . E 4 HOH A 23 823 823 HOH HOH . E 4 HOH A 24 824 824 HOH HOH . E 4 HOH A 25 825 825 HOH HOH . E 4 HOH A 26 826 826 HOH HOH . E 4 HOH A 27 827 827 HOH HOH . E 4 HOH A 28 828 828 HOH HOH . E 4 HOH A 29 829 829 HOH HOH . E 4 HOH A 30 830 830 HOH HOH . E 4 HOH A 31 831 831 HOH HOH . E 4 HOH A 32 832 832 HOH HOH . E 4 HOH A 33 833 833 HOH HOH . E 4 HOH A 34 834 834 HOH HOH . E 4 HOH A 35 835 835 HOH HOH . E 4 HOH A 36 836 836 HOH HOH . E 4 HOH A 37 837 837 HOH HOH . E 4 HOH A 38 838 838 HOH HOH . E 4 HOH A 39 839 839 HOH HOH . E 4 HOH A 40 840 840 HOH HOH . E 4 HOH A 41 841 841 HOH HOH . E 4 HOH A 42 842 842 HOH HOH . E 4 HOH A 43 843 843 HOH HOH . E 4 HOH A 44 844 844 HOH HOH . E 4 HOH A 45 845 845 HOH HOH . E 4 HOH A 46 846 846 HOH HOH . E 4 HOH A 47 847 847 HOH HOH . E 4 HOH A 48 848 848 HOH HOH . E 4 HOH A 49 849 849 HOH HOH . E 4 HOH A 50 850 850 HOH HOH . E 4 HOH A 51 851 851 HOH HOH . E 4 HOH A 52 852 852 HOH HOH . E 4 HOH A 53 853 853 HOH HOH . E 4 HOH A 54 854 854 HOH HOH . E 4 HOH A 55 855 855 HOH HOH . E 4 HOH A 56 856 856 HOH HOH . E 4 HOH A 57 857 857 HOH HOH . E 4 HOH A 58 858 858 HOH HOH . E 4 HOH A 59 859 859 HOH HOH . E 4 HOH A 60 860 860 HOH HOH . E 4 HOH A 61 861 861 HOH HOH . E 4 HOH A 62 862 862 HOH HOH . E 4 HOH A 63 863 863 HOH HOH . E 4 HOH A 64 864 864 HOH HOH . E 4 HOH A 65 865 865 HOH HOH . E 4 HOH A 66 866 866 HOH HOH . E 4 HOH A 67 867 867 HOH HOH . E 4 HOH A 68 868 868 HOH HOH . E 4 HOH A 69 869 869 HOH HOH . E 4 HOH A 70 870 870 HOH HOH . E 4 HOH A 71 871 871 HOH HOH . E 4 HOH A 72 872 872 HOH HOH . E 4 HOH A 73 873 873 HOH HOH . E 4 HOH A 74 874 874 HOH HOH . E 4 HOH A 75 875 875 HOH HOH . E 4 HOH A 76 876 876 HOH HOH . E 4 HOH A 77 877 877 HOH HOH . E 4 HOH A 78 878 878 HOH HOH . E 4 HOH A 79 879 879 HOH HOH . E 4 HOH A 80 880 880 HOH HOH . E 4 HOH A 81 881 881 HOH HOH . E 4 HOH A 82 882 882 HOH HOH . E 4 HOH A 83 883 883 HOH HOH . E 4 HOH A 84 884 884 HOH HOH . E 4 HOH A 85 885 885 HOH HOH . E 4 HOH A 86 886 886 HOH HOH . E 4 HOH A 87 887 887 HOH HOH . E 4 HOH A 88 888 888 HOH HOH . E 4 HOH A 89 889 889 HOH HOH . E 4 HOH A 90 890 890 HOH HOH . E 4 HOH A 91 891 891 HOH HOH . E 4 HOH A 92 892 892 HOH HOH . E 4 HOH A 93 893 893 HOH HOH . E 4 HOH A 94 894 894 HOH HOH . E 4 HOH A 95 895 895 HOH HOH . E 4 HOH A 96 896 896 HOH HOH . E 4 HOH A 97 897 897 HOH HOH . E 4 HOH A 98 898 898 HOH HOH . E 4 HOH A 99 899 899 HOH HOH . E 4 HOH A 100 900 900 HOH HOH . E 4 HOH A 101 901 901 HOH HOH . E 4 HOH A 102 902 902 HOH HOH . E 4 HOH A 103 903 903 HOH HOH . E 4 HOH A 104 904 904 HOH HOH . E 4 HOH A 105 905 905 HOH HOH . E 4 HOH A 106 906 906 HOH HOH . E 4 HOH A 107 907 907 HOH HOH . E 4 HOH A 108 908 908 HOH HOH . E 4 HOH A 109 909 909 HOH HOH . E 4 HOH A 110 910 910 HOH HOH . E 4 HOH A 111 911 911 HOH HOH . E 4 HOH A 112 912 912 HOH HOH . E 4 HOH A 113 913 913 HOH HOH . E 4 HOH A 114 914 914 HOH HOH . E 4 HOH A 115 915 915 HOH HOH . E 4 HOH A 116 916 916 HOH HOH . E 4 HOH A 117 917 917 HOH HOH . E 4 HOH A 118 918 918 HOH HOH . E 4 HOH A 119 919 919 HOH HOH . E 4 HOH A 120 920 920 HOH HOH . E 4 HOH A 121 921 921 HOH HOH . E 4 HOH A 122 922 922 HOH HOH . E 4 HOH A 123 923 923 HOH HOH . E 4 HOH A 124 924 924 HOH HOH . E 4 HOH A 125 925 925 HOH HOH . E 4 HOH A 126 926 926 HOH HOH . E 4 HOH A 127 927 927 HOH HOH . E 4 HOH A 128 928 928 HOH HOH . E 4 HOH A 129 929 929 HOH HOH . E 4 HOH A 130 930 930 HOH HOH . E 4 HOH A 131 931 931 HOH HOH . E 4 HOH A 132 932 932 HOH HOH . E 4 HOH A 133 933 933 HOH HOH . E 4 HOH A 134 934 934 HOH HOH . E 4 HOH A 135 935 935 HOH HOH . E 4 HOH A 136 936 936 HOH HOH . E 4 HOH A 137 937 937 HOH HOH . E 4 HOH A 138 938 938 HOH HOH . E 4 HOH A 139 939 939 HOH HOH . E 4 HOH A 140 940 940 HOH HOH . E 4 HOH A 141 941 941 HOH HOH . E 4 HOH A 142 942 942 HOH HOH . F 4 HOH B 1 801 801 HOH HOH . F 4 HOH B 2 802 802 HOH HOH . F 4 HOH B 3 803 803 HOH HOH . F 4 HOH B 4 804 804 HOH HOH . F 4 HOH B 5 805 805 HOH HOH . F 4 HOH B 6 806 806 HOH HOH . F 4 HOH B 7 807 807 HOH HOH . F 4 HOH B 8 808 808 HOH HOH . F 4 HOH B 9 809 809 HOH HOH . F 4 HOH B 10 810 810 HOH HOH . F 4 HOH B 11 811 811 HOH HOH . F 4 HOH B 12 812 812 HOH HOH . F 4 HOH B 13 813 813 HOH HOH . F 4 HOH B 14 814 814 HOH HOH . F 4 HOH B 15 815 815 HOH HOH . F 4 HOH B 16 816 816 HOH HOH . F 4 HOH B 17 817 817 HOH HOH . F 4 HOH B 18 818 818 HOH HOH . F 4 HOH B 19 819 819 HOH HOH . F 4 HOH B 20 820 820 HOH HOH . F 4 HOH B 21 821 821 HOH HOH . F 4 HOH B 22 822 822 HOH HOH . F 4 HOH B 23 823 823 HOH HOH . F 4 HOH B 24 824 824 HOH HOH . F 4 HOH B 25 825 825 HOH HOH . F 4 HOH B 26 826 826 HOH HOH . F 4 HOH B 27 827 827 HOH HOH . F 4 HOH B 28 828 828 HOH HOH . F 4 HOH B 29 829 829 HOH HOH . F 4 HOH B 30 830 830 HOH HOH . F 4 HOH B 31 831 831 HOH HOH . F 4 HOH B 32 832 832 HOH HOH . F 4 HOH B 33 833 833 HOH HOH . F 4 HOH B 34 834 834 HOH HOH . F 4 HOH B 35 835 835 HOH HOH . F 4 HOH B 36 836 836 HOH HOH . F 4 HOH B 37 837 837 HOH HOH . F 4 HOH B 38 838 838 HOH HOH . F 4 HOH B 39 839 839 HOH HOH . F 4 HOH B 40 840 840 HOH HOH . F 4 HOH B 41 841 841 HOH HOH . F 4 HOH B 42 842 842 HOH HOH . F 4 HOH B 43 843 843 HOH HOH . F 4 HOH B 44 844 844 HOH HOH . F 4 HOH B 45 845 845 HOH HOH . F 4 HOH B 46 846 846 HOH HOH . F 4 HOH B 47 847 847 HOH HOH . F 4 HOH B 48 848 848 HOH HOH . F 4 HOH B 49 849 849 HOH HOH . F 4 HOH B 50 850 850 HOH HOH . F 4 HOH B 51 851 851 HOH HOH . F 4 HOH B 52 852 852 HOH HOH . F 4 HOH B 53 853 853 HOH HOH . F 4 HOH B 54 854 854 HOH HOH . F 4 HOH B 55 855 855 HOH HOH . F 4 HOH B 56 856 856 HOH HOH . F 4 HOH B 57 857 857 HOH HOH . F 4 HOH B 58 858 858 HOH HOH . F 4 HOH B 59 859 859 HOH HOH . F 4 HOH B 60 860 860 HOH HOH . F 4 HOH B 61 861 861 HOH HOH . F 4 HOH B 62 862 862 HOH HOH . F 4 HOH B 63 863 863 HOH HOH . F 4 HOH B 64 864 864 HOH HOH . F 4 HOH B 65 865 865 HOH HOH . F 4 HOH B 66 866 866 HOH HOH . F 4 HOH B 67 867 867 HOH HOH . F 4 HOH B 68 868 868 HOH HOH . F 4 HOH B 69 869 869 HOH HOH . F 4 HOH B 70 870 870 HOH HOH . F 4 HOH B 71 871 871 HOH HOH . F 4 HOH B 72 872 872 HOH HOH . F 4 HOH B 73 873 873 HOH HOH . F 4 HOH B 74 874 874 HOH HOH . F 4 HOH B 75 875 875 HOH HOH . F 4 HOH B 76 876 876 HOH HOH . F 4 HOH B 77 877 877 HOH HOH . F 4 HOH B 78 878 878 HOH HOH . F 4 HOH B 79 879 879 HOH HOH . F 4 HOH B 80 880 880 HOH HOH . F 4 HOH B 81 881 881 HOH HOH . F 4 HOH B 82 882 882 HOH HOH . F 4 HOH B 83 883 883 HOH HOH . F 4 HOH B 84 884 884 HOH HOH . F 4 HOH B 85 885 885 HOH HOH . F 4 HOH B 86 886 886 HOH HOH . F 4 HOH B 87 887 887 HOH HOH . F 4 HOH B 88 888 888 HOH HOH . F 4 HOH B 89 889 889 HOH HOH . F 4 HOH B 90 890 890 HOH HOH . F 4 HOH B 91 891 891 HOH HOH . F 4 HOH B 92 892 892 HOH HOH . F 4 HOH B 93 893 893 HOH HOH . F 4 HOH B 94 894 894 HOH HOH . F 4 HOH B 95 895 895 HOH HOH . F 4 HOH B 96 896 896 HOH HOH . F 4 HOH B 97 897 897 HOH HOH . F 4 HOH B 98 898 898 HOH HOH . F 4 HOH B 99 899 899 HOH HOH . F 4 HOH B 100 900 900 HOH HOH . F 4 HOH B 101 901 901 HOH HOH . F 4 HOH B 102 902 902 HOH HOH . F 4 HOH B 103 903 903 HOH HOH . F 4 HOH B 104 904 904 HOH HOH . F 4 HOH B 105 905 905 HOH HOH . F 4 HOH B 106 906 906 HOH HOH . F 4 HOH B 107 907 907 HOH HOH . F 4 HOH B 108 908 908 HOH HOH . F 4 HOH B 109 909 909 HOH HOH . F 4 HOH B 110 910 910 HOH HOH . F 4 HOH B 111 911 911 HOH HOH . F 4 HOH B 112 912 912 HOH HOH . F 4 HOH B 113 913 913 HOH HOH . F 4 HOH B 114 914 914 HOH HOH . F 4 HOH B 115 915 915 HOH HOH . F 4 HOH B 116 916 916 HOH HOH . F 4 HOH B 117 917 917 HOH HOH . F 4 HOH B 118 918 918 HOH HOH . F 4 HOH B 119 919 919 HOH HOH . F 4 HOH B 120 920 920 HOH HOH . F 4 HOH B 121 921 921 HOH HOH . F 4 HOH B 122 922 922 HOH HOH . F 4 HOH B 123 923 923 HOH HOH . F 4 HOH B 124 924 924 HOH HOH . F 4 HOH B 125 925 925 HOH HOH . F 4 HOH B 126 926 926 HOH HOH . F 4 HOH B 127 927 927 HOH HOH . F 4 HOH B 128 928 928 HOH HOH . F 4 HOH B 129 929 929 HOH HOH . F 4 HOH B 130 930 930 HOH HOH . F 4 HOH B 131 931 931 HOH HOH . F 4 HOH B 132 932 932 HOH HOH . F 4 HOH B 133 933 933 HOH HOH . F 4 HOH B 134 934 934 HOH HOH . F 4 HOH B 135 935 935 HOH HOH . F 4 HOH B 136 936 936 HOH HOH . F 4 HOH B 137 937 937 HOH HOH . F 4 HOH B 138 938 938 HOH HOH . F 4 HOH B 139 939 939 HOH HOH . F 4 HOH B 140 940 940 HOH HOH . F 4 HOH B 141 941 941 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.714 _atom_site.Cartn_y 26.323 _atom_site.Cartn_z 69.374 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 25.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #