data_3LSY # _model_server_result.job_id O02KDVsBLRwJf_Eupjn63g _model_server_result.datetime_utc '2024-10-28 15:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3LSY # _exptl.entry_id 3LSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LSY _cell.length_a 132.035 _cell.length_b 132.035 _cell.length_c 83.026 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 132.035 132.035 41.513 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 264 n n PA O2A NAD sing 265 n n PA O5B NAD sing 266 n n PA O3 NAD sing 267 n n O2A HOA2 NAD sing 268 n n O5B C5B NAD sing 269 n n C5B C4B NAD sing 270 n n C5B H51A NAD sing 271 n n C5B H52A NAD sing 272 n n C4B O4B NAD sing 273 n n C4B C3B NAD sing 274 n n C4B H4B NAD sing 275 n n O4B C1B NAD sing 276 n n C3B O3B NAD sing 277 n n C3B C2B NAD sing 278 n n C3B H3B NAD sing 279 n n O3B HO3A NAD sing 280 n n C2B O2B NAD sing 281 n n C2B C1B NAD sing 282 n n C2B H2B NAD sing 283 n n O2B HO2A NAD sing 284 n n C1B N9A NAD sing 285 n n C1B H1B NAD sing 286 n n N9A C8A NAD sing 287 n y N9A C4A NAD sing 288 n y C8A N7A NAD doub 289 n y C8A H8A NAD sing 290 n n N7A C5A NAD sing 291 n y C5A C6A NAD sing 292 n y C5A C4A NAD doub 293 n y C6A N6A NAD sing 294 n n C6A N1A NAD doub 295 n y N6A H61A NAD sing 296 n n N6A H62A NAD sing 297 n n N1A C2A NAD sing 298 n y C2A N3A NAD doub 299 n y C2A H2A NAD sing 300 n n N3A C4A NAD sing 301 n y O3 PN NAD sing 302 n n PN O1N NAD doub 303 n n PN O2N NAD sing 304 n n PN O5D NAD sing 305 n n O5D C5D NAD sing 306 n n C5D C4D NAD sing 307 n n C5D H51N NAD sing 308 n n C5D H52N NAD sing 309 n n C4D O4D NAD sing 310 n n C4D C3D NAD sing 311 n n C4D H4D NAD sing 312 n n O4D C1D NAD sing 313 n n C3D O3D NAD sing 314 n n C3D C2D NAD sing 315 n n C3D H3D NAD sing 316 n n O3D HO3N NAD sing 317 n n C2D O2D NAD sing 318 n n C2D C1D NAD sing 319 n n C2D H2D NAD sing 320 n n O2D HO2N NAD sing 321 n n C1D N1N NAD sing 322 n n C1D H1D NAD sing 323 n n N1N C2N NAD sing 324 n y N1N C6N NAD doub 325 n y C2N C3N NAD doub 326 n y C2N H2N NAD sing 327 n n C3N C7N NAD sing 328 n n C3N C4N NAD sing 329 n y C7N O7N NAD doub 330 n n C7N N7N NAD sing 331 n n N7N H71N NAD sing 332 n n N7N H72N NAD sing 333 n n C4N C5N NAD doub 334 n y C4N H4N NAD sing 335 n n C5N C6N NAD sing 336 n y C5N H5N NAD sing 337 n n C6N H6N NAD sing 338 n n # _atom_sites.entry_id 3LSY _atom_sites.fract_transf_matrix[1][1] 0.007574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 501 501 NAD NAD . D 3 FT0 A 1 502 502 FT0 FT0 . E 2 NAD B 1 601 601 NAD NAD . F 3 FT0 B 1 602 602 FT0 FT0 . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 2 2 HOH HOH . G 4 HOH A 3 3 3 HOH HOH . G 4 HOH A 4 4 4 HOH HOH . G 4 HOH A 5 5 5 HOH HOH . G 4 HOH A 6 6 6 HOH HOH . G 4 HOH A 7 10 10 HOH HOH . G 4 HOH A 8 11 11 HOH HOH . G 4 HOH A 9 15 15 HOH HOH . G 4 HOH A 10 20 20 HOH HOH . G 4 HOH A 11 31 31 HOH HOH . G 4 HOH A 12 33 33 HOH HOH . G 4 HOH A 13 34 34 HOH HOH . G 4 HOH A 14 35 35 HOH HOH . G 4 HOH A 15 37 37 HOH HOH . G 4 HOH A 16 40 40 HOH HOH . G 4 HOH A 17 41 41 HOH HOH . G 4 HOH A 18 42 42 HOH HOH . G 4 HOH A 19 43 43 HOH HOH . G 4 HOH A 20 46 46 HOH HOH . G 4 HOH A 21 47 47 HOH HOH . G 4 HOH A 22 48 48 HOH HOH . H 4 HOH B 1 7 7 HOH HOH . H 4 HOH B 2 8 8 HOH HOH . H 4 HOH B 3 9 9 HOH HOH . H 4 HOH B 4 12 12 HOH HOH . H 4 HOH B 5 13 13 HOH HOH . H 4 HOH B 6 14 14 HOH HOH . H 4 HOH B 7 16 16 HOH HOH . H 4 HOH B 8 17 17 HOH HOH . H 4 HOH B 9 18 18 HOH HOH . H 4 HOH B 10 19 19 HOH HOH . H 4 HOH B 11 21 21 HOH HOH . H 4 HOH B 12 22 22 HOH HOH . H 4 HOH B 13 23 23 HOH HOH . H 4 HOH B 14 24 24 HOH HOH . H 4 HOH B 15 25 25 HOH HOH . H 4 HOH B 16 26 26 HOH HOH . H 4 HOH B 17 27 27 HOH HOH . H 4 HOH B 18 28 28 HOH HOH . H 4 HOH B 19 29 29 HOH HOH . H 4 HOH B 20 30 30 HOH HOH . H 4 HOH B 21 32 32 HOH HOH . H 4 HOH B 22 36 36 HOH HOH . H 4 HOH B 23 38 38 HOH HOH . H 4 HOH B 24 39 39 HOH HOH . H 4 HOH B 25 44 44 HOH HOH . H 4 HOH B 26 45 45 HOH HOH . H 4 HOH B 27 49 49 HOH HOH . H 4 HOH B 28 50 50 HOH HOH . H 4 HOH B 29 51 51 HOH HOH . H 4 HOH B 30 52 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 51.352 88.874 40.487 1 52.6 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . C 2 52.839 88.634 40.263 1 51.85 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . C 2 50.898 89.366 41.841 1 50.13 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . C 2 50.526 87.517 40.172 1 52.31 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . C 2 50.868 86.733 39.026 1 52.83 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . C 2 51.382 85.397 39.533 1 51.72 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . C 2 51.265 84.406 38.507 1 51.7 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . C 2 52.862 85.485 39.894 1 51.58 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . C 2 52.982 85.594 41.315 1 51.48 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . C 2 53.471 84.188 39.402 1 51.66 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . C 2 53.932 83.421 40.517 1 53.69 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . C 2 52.313 83.444 38.739 1 52.21 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . C 2 52.781 82.735 37.511 1 49.97 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . C 2 53.573 83.261 36.556 1 50.38 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . C 2 53.802 82.329 35.589 1 47.45 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . C 2 53.154 81.212 35.967 1 46.48 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . C 2 53.008 79.863 35.367 1 45.15 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . C 2 53.606 79.583 34.199 1 45.82 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . C 2 52.256 78.936 36 1 44.83 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . C 2 51.656 79.249 37.175 1 46.43 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . C 2 51.769 80.476 37.75 1 46.82 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . C 2 52.502 81.461 37.174 1 47.95 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . C 2 50.812 89.879 39.315 1 51.94 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . C 2 49.451 90.774 39.448 1 48.48 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . C 2 49.885 92.23 39.316 1 48.32 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . C 2 48.612 90.293 40.62 1 47.87 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . C 2 48.647 90.337 38.135 1 47.44 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . C 2 47.666 89.307 38.193 1 44.56 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . C 2 46.932 89.34 36.855 1 44.39 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . C 2 46.218 90.582 36.712 1 45.18 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . C 2 47.925 89.298 35.712 1 45.05 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . C 2 47.535 88.228 34.836 1 43.8 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . C 2 47.829 90.596 34.945 1 45.59 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . C 2 47.79 90.268 33.54 1 47.21 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . C 2 46.511 91.214 35.445 1 45.9 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . C 2 46.551 92.692 35.54 1 43.75 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . C 2 47.431 93.256 36.391 1 45.01 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . C 2 47.547 94.633 36.548 1 45.22 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . C 2 48.552 95.192 37.527 1 46.34 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . C 2 48.812 96.38 37.562 1 46.36 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . C 2 49.174 94.372 38.366 1 46.85 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . C 2 46.65 95.544 35.722 1 45.46 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . C 2 45.721 94.825 34.824 1 42.98 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . C 2 45.717 93.431 34.768 1 42.26 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #