data_3LT5 # _model_server_result.job_id O4jzpywLTqBfBk1waQ5-jQ _model_server_result.datetime_utc '2024-11-06 22:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":213}' # _entry.id 3LT5 # _exptl.entry_id 3LT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LT5 _cell.length_a 83.097 _cell.length_b 83.097 _cell.length_c 109.05 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 125 n n N1 C10 FMN doub 126 n n C2 O2 FMN doub 127 n n C2 N3 FMN sing 128 n n N3 C4 FMN sing 129 n n N3 HN3 FMN sing 130 n n C4 O4 FMN doub 131 n n C4 C4A FMN sing 132 n n C4A N5 FMN doub 133 n n C4A C10 FMN sing 134 n n N5 C5A FMN sing 135 n n C5A C6 FMN doub 136 n y C5A C9A FMN sing 137 n y C6 C7 FMN sing 138 n y C6 H6 FMN sing 139 n n C7 C7M FMN sing 140 n n C7 C8 FMN doub 141 n y C7M HM71 FMN sing 142 n n C7M HM72 FMN sing 143 n n C7M HM73 FMN sing 144 n n C8 C8M FMN sing 145 n n C8 C9 FMN sing 146 n y C8M HM81 FMN sing 147 n n C8M HM82 FMN sing 148 n n C8M HM83 FMN sing 149 n n C9 C9A FMN doub 150 n y C9 H9 FMN sing 151 n n C9A N10 FMN sing 152 n n N10 C10 FMN sing 153 n n N10 C1' FMN sing 154 n n C1' C2' FMN sing 155 n n C1' "H1'1" FMN sing 156 n n C1' "H1'2" FMN sing 157 n n C2' O2' FMN sing 158 n n C2' C3' FMN sing 159 n n C2' H2' FMN sing 160 n n O2' HO2' FMN sing 161 n n C3' O3' FMN sing 162 n n C3' C4' FMN sing 163 n n C3' H3' FMN sing 164 n n O3' HO3' FMN sing 165 n n C4' O4' FMN sing 166 n n C4' C5' FMN sing 167 n n C4' H4' FMN sing 168 n n O4' HO4' FMN sing 169 n n C5' O5' FMN sing 170 n n C5' "H5'1" FMN sing 171 n n C5' "H5'2" FMN sing 172 n n O5' P FMN sing 173 n n P O1P FMN doub 174 n n P O2P FMN sing 175 n n P O3P FMN sing 176 n n O2P HOP2 FMN sing 177 n n O3P HOP3 FMN sing 178 n n # _atom_sites.entry_id 3LT5 _atom_sites.fract_transf_matrix[1][1] 0.012034 _atom_sites.fract_transf_matrix[1][2] 0.006948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 213 1 FMN FMN . D 3 GOL A 1 214 1 GOL GOL . E 4 BLQ A 1 215 1 BLQ BLQ . F 4 BLQ A 1 216 1 BLQ BLQ . G 2 FMN B 1 213 1 FMN FMN . H 3 GOL B 1 214 1 GOL GOL . I 3 GOL B 1 215 1 GOL GOL . J 5 HOH A 1 217 4 HOH HOH . J 5 HOH A 2 218 5 HOH HOH . J 5 HOH A 3 219 9 HOH HOH . J 5 HOH A 4 220 12 HOH HOH . J 5 HOH A 5 221 15 HOH HOH . J 5 HOH A 6 222 16 HOH HOH . J 5 HOH A 7 223 17 HOH HOH . J 5 HOH A 8 224 19 HOH HOH . J 5 HOH A 9 225 20 HOH HOH . J 5 HOH A 10 226 22 HOH HOH . J 5 HOH A 11 227 24 HOH HOH . J 5 HOH A 12 228 26 HOH HOH . J 5 HOH A 13 229 27 HOH HOH . J 5 HOH A 14 230 29 HOH HOH . J 5 HOH A 15 231 31 HOH HOH . J 5 HOH A 16 232 32 HOH HOH . J 5 HOH A 17 233 33 HOH HOH . J 5 HOH A 18 234 34 HOH HOH . J 5 HOH A 19 235 35 HOH HOH . J 5 HOH A 20 236 36 HOH HOH . J 5 HOH A 21 237 37 HOH HOH . J 5 HOH A 22 238 38 HOH HOH . J 5 HOH A 23 239 39 HOH HOH . J 5 HOH A 24 240 40 HOH HOH . J 5 HOH A 25 241 41 HOH HOH . J 5 HOH A 26 242 42 HOH HOH . J 5 HOH A 27 243 43 HOH HOH . J 5 HOH A 28 244 44 HOH HOH . J 5 HOH A 29 245 45 HOH HOH . J 5 HOH A 30 246 47 HOH HOH . J 5 HOH A 31 247 48 HOH HOH . J 5 HOH A 32 248 49 HOH HOH . J 5 HOH A 33 249 51 HOH HOH . J 5 HOH A 34 250 52 HOH HOH . J 5 HOH A 35 251 53 HOH HOH . J 5 HOH A 36 252 54 HOH HOH . J 5 HOH A 37 253 55 HOH HOH . J 5 HOH A 38 254 61 HOH HOH . J 5 HOH A 39 255 78 HOH HOH . J 5 HOH A 40 256 79 HOH HOH . J 5 HOH A 41 257 80 HOH HOH . J 5 HOH A 42 258 82 HOH HOH . J 5 HOH A 43 259 83 HOH HOH . J 5 HOH A 44 260 84 HOH HOH . J 5 HOH A 45 261 85 HOH HOH . J 5 HOH A 46 262 87 HOH HOH . J 5 HOH A 47 263 88 HOH HOH . J 5 HOH A 48 264 89 HOH HOH . J 5 HOH A 49 265 90 HOH HOH . J 5 HOH A 50 266 92 HOH HOH . J 5 HOH A 51 267 94 HOH HOH . J 5 HOH A 52 268 95 HOH HOH . J 5 HOH A 53 269 96 HOH HOH . J 5 HOH A 54 270 97 HOH HOH . J 5 HOH A 55 271 99 HOH HOH . J 5 HOH A 56 272 100 HOH HOH . J 5 HOH A 57 273 102 HOH HOH . J 5 HOH A 58 274 103 HOH HOH . J 5 HOH A 59 275 107 HOH HOH . J 5 HOH A 60 276 109 HOH HOH . J 5 HOH A 61 277 113 HOH HOH . J 5 HOH A 62 278 118 HOH HOH . J 5 HOH A 63 279 125 HOH HOH . J 5 HOH A 64 280 129 HOH HOH . J 5 HOH A 65 281 132 HOH HOH . J 5 HOH A 66 282 135 HOH HOH . J 5 HOH A 67 283 136 HOH HOH . J 5 HOH A 68 284 137 HOH HOH . J 5 HOH A 69 285 138 HOH HOH . J 5 HOH A 70 286 139 HOH HOH . J 5 HOH A 71 287 140 HOH HOH . J 5 HOH A 72 288 141 HOH HOH . J 5 HOH A 73 289 142 HOH HOH . J 5 HOH A 74 290 143 HOH HOH . J 5 HOH A 75 291 145 HOH HOH . J 5 HOH A 76 292 153 HOH HOH . K 5 HOH B 1 216 1 HOH HOH . K 5 HOH B 2 217 2 HOH HOH . K 5 HOH B 3 218 3 HOH HOH . K 5 HOH B 4 219 6 HOH HOH . K 5 HOH B 5 220 7 HOH HOH . K 5 HOH B 6 221 8 HOH HOH . K 5 HOH B 7 222 10 HOH HOH . K 5 HOH B 8 223 11 HOH HOH . K 5 HOH B 9 224 13 HOH HOH . K 5 HOH B 10 225 14 HOH HOH . K 5 HOH B 11 226 18 HOH HOH . K 5 HOH B 12 227 21 HOH HOH . K 5 HOH B 13 228 23 HOH HOH . K 5 HOH B 14 229 25 HOH HOH . K 5 HOH B 15 230 28 HOH HOH . K 5 HOH B 16 231 30 HOH HOH . K 5 HOH B 17 232 46 HOH HOH . K 5 HOH B 18 233 50 HOH HOH . K 5 HOH B 19 234 56 HOH HOH . K 5 HOH B 20 235 57 HOH HOH . K 5 HOH B 21 236 58 HOH HOH . K 5 HOH B 22 237 59 HOH HOH . K 5 HOH B 23 238 60 HOH HOH . K 5 HOH B 24 239 62 HOH HOH . K 5 HOH B 25 240 63 HOH HOH . K 5 HOH B 26 241 64 HOH HOH . K 5 HOH B 27 242 65 HOH HOH . K 5 HOH B 28 243 66 HOH HOH . K 5 HOH B 29 244 67 HOH HOH . K 5 HOH B 30 245 68 HOH HOH . K 5 HOH B 31 246 69 HOH HOH . K 5 HOH B 32 247 70 HOH HOH . K 5 HOH B 33 248 71 HOH HOH . K 5 HOH B 34 249 72 HOH HOH . K 5 HOH B 35 250 73 HOH HOH . K 5 HOH B 36 251 74 HOH HOH . K 5 HOH B 37 252 75 HOH HOH . K 5 HOH B 38 253 76 HOH HOH . K 5 HOH B 39 254 77 HOH HOH . K 5 HOH B 40 255 81 HOH HOH . K 5 HOH B 41 256 86 HOH HOH . K 5 HOH B 42 257 91 HOH HOH . K 5 HOH B 43 258 93 HOH HOH . K 5 HOH B 44 259 98 HOH HOH . K 5 HOH B 45 260 101 HOH HOH . K 5 HOH B 46 261 104 HOH HOH . K 5 HOH B 47 262 105 HOH HOH . K 5 HOH B 48 263 106 HOH HOH . K 5 HOH B 49 264 108 HOH HOH . K 5 HOH B 50 265 110 HOH HOH . K 5 HOH B 51 266 111 HOH HOH . K 5 HOH B 52 267 112 HOH HOH . K 5 HOH B 53 268 114 HOH HOH . K 5 HOH B 54 269 115 HOH HOH . K 5 HOH B 55 270 116 HOH HOH . K 5 HOH B 56 271 117 HOH HOH . K 5 HOH B 57 272 119 HOH HOH . K 5 HOH B 58 273 120 HOH HOH . K 5 HOH B 59 274 121 HOH HOH . K 5 HOH B 60 275 122 HOH HOH . K 5 HOH B 61 276 123 HOH HOH . K 5 HOH B 62 277 124 HOH HOH . K 5 HOH B 63 278 126 HOH HOH . K 5 HOH B 64 279 127 HOH HOH . K 5 HOH B 65 280 128 HOH HOH . K 5 HOH B 66 281 130 HOH HOH . K 5 HOH B 67 282 131 HOH HOH . K 5 HOH B 68 283 133 HOH HOH . K 5 HOH B 69 284 134 HOH HOH . K 5 HOH B 70 285 144 HOH HOH . K 5 HOH B 71 286 146 HOH HOH . K 5 HOH B 72 287 147 HOH HOH . K 5 HOH B 73 288 148 HOH HOH . K 5 HOH B 74 289 149 HOH HOH . K 5 HOH B 75 290 150 HOH HOH . K 5 HOH B 76 291 151 HOH HOH . K 5 HOH B 77 292 152 HOH HOH . K 5 HOH B 78 293 154 HOH HOH . K 5 HOH B 79 294 155 HOH HOH . K 5 HOH B 80 295 156 HOH HOH . K 5 HOH B 81 296 157 HOH HOH . K 5 HOH B 82 297 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -21.89 -11.833 20.642 1 21.42 ? N1 FMN 213 A 1 HETATM 2 C C2 FMN . . . C 2 -23.032 -11.05 20.615 1 22.51 ? C2 FMN 213 A 1 HETATM 3 O O2 FMN . . . C 2 -23.813 -11.012 21.575 1 22.11 ? O2 FMN 213 A 1 HETATM 4 N N3 FMN . . . C 2 -23.307 -10.293 19.502 1 17.38 ? N3 FMN 213 A 1 HETATM 5 C C4 FMN . . . C 2 -22.47 -10.3 18.405 1 21.6 ? C4 FMN 213 A 1 HETATM 6 O O4 FMN . . . C 2 -22.75 -9.619 17.411 1 22.24 ? O4 FMN 213 A 1 HETATM 7 C C4A FMN . . . C 2 -21.311 -11.075 18.426 1 28.17 ? C4A FMN 213 A 1 HETATM 8 N N5 FMN . . . C 2 -20.453 -11.076 17.334 1 18.27 ? N5 FMN 213 A 1 HETATM 9 C C5A FMN . . . C 2 -19.314 -11.868 17.368 1 22.79 ? C5A FMN 213 A 1 HETATM 10 C C6 FMN . . . C 2 -18.453 -11.893 16.264 1 16.97 ? C6 FMN 213 A 1 HETATM 11 C C7 FMN . . . C 2 -17.31 -12.681 16.285 1 22.71 ? C7 FMN 213 A 1 HETATM 12 C C7M FMN . . . C 2 -16.404 -12.694 15.079 1 17.94 ? C7M FMN 213 A 1 HETATM 13 C C8 FMN . . . C 2 -17.018 -13.455 17.415 1 25.72 ? C8 FMN 213 A 1 HETATM 14 C C8M FMN . . . C 2 -15.784 -14.317 17.44 1 19.76 ? C8M FMN 213 A 1 HETATM 15 C C9 FMN . . . C 2 -17.878 -13.441 18.519 1 18.05 ? C9 FMN 213 A 1 HETATM 16 C C9A FMN . . . C 2 -19.034 -12.651 18.49 1 19.45 ? C9A FMN 213 A 1 HETATM 17 N N10 FMN . . . C 2 -19.881 -12.622 19.584 1 20.48 ? N10 FMN 213 A 1 HETATM 18 C C10 FMN . . . C 2 -21.028 -11.85 19.556 1 21.91 ? C10 FMN 213 A 1 HETATM 19 C C1' FMN . . . C 2 -19.578 -13.473 20.787 1 18.99 ? C1' FMN 213 A 1 HETATM 20 C C2' FMN . . . C 2 -20.088 -14.882 20.451 1 19.66 ? C2' FMN 213 A 1 HETATM 21 O O2' FMN . . . C 2 -21.427 -14.847 20.001 1 20.2 ? O2' FMN 213 A 1 HETATM 22 C C3' FMN . . . C 2 -19.997 -15.843 21.622 1 22.76 ? C3' FMN 213 A 1 HETATM 23 O O3' FMN . . . C 2 -18.642 -15.916 22.034 1 23.65 ? O3' FMN 213 A 1 HETATM 24 C C4' FMN . . . C 2 -20.522 -17.221 21.197 1 27.24 ? C4' FMN 213 A 1 HETATM 25 O O4' FMN . . . C 2 -20.687 -18.04 22.33 1 26.48 ? O4' FMN 213 A 1 HETATM 26 C C5' FMN . . . C 2 -19.586 -17.953 20.233 1 25.53 ? C5' FMN 213 A 1 HETATM 27 O O5' FMN . . . C 2 -20.211 -19.154 19.818 1 24.17 ? O5' FMN 213 A 1 HETATM 28 P P FMN . . . C 2 -19.544 -20.584 20.147 1 23.01 ? P FMN 213 A 1 HETATM 29 O O1P FMN . . . C 2 -19.269 -20.655 21.641 1 23.04 ? O1P FMN 213 A 1 HETATM 30 O O2P FMN . . . C 2 -18.222 -20.709 19.402 1 22.98 ? O2P FMN 213 A 1 HETATM 31 O O3P FMN . . . C 2 -20.483 -21.695 19.734 1 26.46 ? O3P FMN 213 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #