data_3LTA # _model_server_result.job_id TYoe7_N5575UGB5TkkxJlA _model_server_result.datetime_utc '2024-11-12 20:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":81}' # _entry.id 3LTA # _exptl.entry_id 3LTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LTA _cell.length_a 71.107 _cell.length_b 71.107 _cell.length_c 55.935 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 18.645 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 23 1_555 B ZN ZN . A ZN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A SG CYS 28 A CYS 26 1_555 B ZN ZN . A ZN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc3 A SG CYS 48 A CYS 46 1_555 B ZN ZN . A ZN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc4 A SG CYS 51 A CYS 49 1_555 B ZN ZN . A ZN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3LTA _atom_sites.fract_transf_matrix[1][1] 0.014063 _atom_sites.fract_transf_matrix[1][2] 0.008119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 80 80 ZN ZN . C 3 ATP A 1 81 81 ATP ATP . D 4 PEG A 1 82 82 PEG PEG . E 4 PEG A 1 83 83 PEG PEG . F 4 PEG A 1 84 84 PEG PEG . G 5 CL A 1 85 85 CL CL . H 6 HOH A 1 86 86 HOH HOH . H 6 HOH A 2 87 87 HOH HOH . H 6 HOH A 3 88 88 HOH HOH . H 6 HOH A 4 89 89 HOH HOH . H 6 HOH A 5 90 90 HOH HOH . H 6 HOH A 6 91 91 HOH HOH . H 6 HOH A 7 92 92 HOH HOH . H 6 HOH A 8 93 93 HOH HOH . H 6 HOH A 9 94 94 HOH HOH . H 6 HOH A 10 95 95 HOH HOH . H 6 HOH A 11 96 96 HOH HOH . H 6 HOH A 12 97 97 HOH HOH . H 6 HOH A 13 98 98 HOH HOH . H 6 HOH A 14 99 99 HOH HOH . H 6 HOH A 15 100 100 HOH HOH . H 6 HOH A 16 101 101 HOH HOH . H 6 HOH A 17 102 102 HOH HOH . H 6 HOH A 18 103 103 HOH HOH . H 6 HOH A 19 104 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 20.617 -14.691 17.094 0.5 53.57 ? PG ATP 81 A 1 HETATM 2 O O1G ATP . . . C 3 22.081 -14.286 17.202 0.5 53.83 ? O1G ATP 81 A 1 HETATM 3 O O2G ATP . . . C 3 19.764 -13.678 16.365 0.5 51.28 ? O2G ATP 81 A 1 HETATM 4 O O3G ATP . . . C 3 20.396 -16.133 16.684 0.5 52.37 ? O3G ATP 81 A 1 HETATM 5 P PB ATP . . . C 3 20.843 -15.465 19.815 0.5 52.86 ? PB ATP 81 A 1 HETATM 6 O O1B ATP . . . C 3 21.229 -16.845 19.309 0.5 51.8 ? O1B ATP 81 A 1 HETATM 7 O O2B ATP . . . C 3 20.125 -15.29 21.137 0.5 51.8 ? O2B ATP 81 A 1 HETATM 8 O O3B ATP . . . C 3 20.084 -14.66 18.627 0.5 53 ? O3B ATP 81 A 1 HETATM 9 P PA ATP . . . C 3 23.48 -15.177 19.188 0.5 49.62 ? PA ATP 81 A 1 HETATM 10 O O1A ATP . . . C 3 23.87 -14.205 18.089 0.5 47.68 ? O1A ATP 81 A 1 HETATM 11 O O2A ATP . . . C 3 23.228 -16.643 18.915 0.5 48.84 ? O2A ATP 81 A 1 HETATM 12 O O3A ATP . . . C 3 22.175 -14.581 19.896 0.5 51.39 ? O3A ATP 81 A 1 HETATM 13 O O5' ATP . . . C 3 24.48 -15.114 20.448 1 49.26 ? O5' ATP 81 A 1 HETATM 14 C C5' ATP . . . C 3 24.024 -14.923 21.796 1 47 ? C5' ATP 81 A 1 HETATM 15 C C4' ATP . . . C 3 25.034 -14.032 22.548 1 44.9 ? C4' ATP 81 A 1 HETATM 16 O O4' ATP . . . C 3 26.38 -14.563 22.563 1 42.97 ? O4' ATP 81 A 1 HETATM 17 C C3' ATP . . . C 3 25.203 -12.675 21.892 1 43.36 ? C3' ATP 81 A 1 HETATM 18 O O3' ATP . . . C 3 25.747 -11.809 22.895 1 43.17 ? O3' ATP 81 A 1 HETATM 19 C C2' ATP . . . C 3 26.339 -12.9 20.939 1 41.45 ? C2' ATP 81 A 1 HETATM 20 O O2' ATP . . . C 3 26.938 -11.654 20.587 1 43.34 ? O2' ATP 81 A 1 HETATM 21 C C1' ATP . . . C 3 27.275 -13.726 21.805 1 38.87 ? C1' ATP 81 A 1 HETATM 22 N N9 ATP . . . C 3 28.191 -14.522 20.942 1 34.91 ? N9 ATP 81 A 1 HETATM 23 C C8 ATP . . . C 3 27.776 -15.484 20.099 1 33.25 ? C8 ATP 81 A 1 HETATM 24 N N7 ATP . . . C 3 28.806 -16.037 19.416 1 30.72 ? N7 ATP 81 A 1 HETATM 25 C C5 ATP . . . C 3 29.928 -15.424 19.814 1 30.02 ? C5 ATP 81 A 1 HETATM 26 C C6 ATP . . . C 3 31.363 -15.539 19.485 1 29.11 ? C6 ATP 81 A 1 HETATM 27 N N6 ATP . . . C 3 31.799 -16.442 18.576 1 26.89 ? N6 ATP 81 A 1 HETATM 28 N N1 ATP . . . C 3 32.218 -14.711 20.127 1 30.07 ? N1 ATP 81 A 1 HETATM 29 C C2 ATP . . . C 3 31.803 -13.811 21.032 1 28.71 ? C2 ATP 81 A 1 HETATM 30 N N3 ATP . . . C 3 30.517 -13.664 21.365 1 30.08 ? N3 ATP 81 A 1 HETATM 31 C C4 ATP . . . C 3 29.533 -14.423 20.815 1 31.89 ? C4 ATP 81 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #