data_3LTD # _model_server_result.job_id -TVySxsQgXDZGM184YUA6w _model_server_result.datetime_utc '2024-11-23 21:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ltd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":80}' # _entry.id 3LTD # _exptl.entry_id 3LTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LTD _cell.length_a 73.145 _cell.length_b 73.145 _cell.length_c 54.804 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 18.268 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 23 1_555 C ZN ZN . A ZN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 28 A CYS 26 1_555 C ZN ZN . A ZN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A SG CYS 48 A CYS 46 1_555 C ZN ZN . A ZN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 A SG CYS 51 A CYS 49 1_555 C ZN ZN . A ZN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 262 n n C1 C2 PEG sing 263 n n C1 H11 PEG sing 264 n n C1 H12 PEG sing 265 n n O1 HO1 PEG sing 266 n n C2 O2 PEG sing 267 n n C2 H21 PEG sing 268 n n C2 H22 PEG sing 269 n n O2 C3 PEG sing 270 n n C3 C4 PEG sing 271 n n C3 H31 PEG sing 272 n n C3 H32 PEG sing 273 n n C4 O4 PEG sing 274 n n C4 H41 PEG sing 275 n n C4 H42 PEG sing 276 n n O4 HO4 PEG sing 277 n n # _atom_sites.entry_id 3LTD _atom_sites.fract_transf_matrix[1][1] 0.013671 _atom_sites.fract_transf_matrix[1][2] 0.007893 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 80 80 PEG PEG . C 3 ZN A 1 81 81 ZN ZN . D 4 ADP A 1 82 82 ADP ADP . E 2 PEG A 1 83 83 PEG PEG . F 5 CL A 1 84 84 CL CL . G 6 HOH A 1 85 85 HOH HOH . G 6 HOH A 2 86 86 HOH HOH . G 6 HOH A 3 87 87 HOH HOH . G 6 HOH A 4 88 88 HOH HOH . G 6 HOH A 5 89 89 HOH HOH . G 6 HOH A 6 90 90 HOH HOH . G 6 HOH A 7 91 91 HOH HOH . G 6 HOH A 8 92 92 HOH HOH . G 6 HOH A 9 93 93 HOH HOH . G 6 HOH A 10 94 94 HOH HOH . G 6 HOH A 11 95 95 HOH HOH . G 6 HOH A 12 96 96 HOH HOH . G 6 HOH A 13 97 97 HOH HOH . G 6 HOH A 14 98 98 HOH HOH . G 6 HOH A 15 99 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . B 2 -37.068 13.835 4.852 1 31.39 ? C1 PEG 80 A 1 HETATM 2 O O1 PEG . . . B 2 -37.102 14.544 3.6 1 30.27 ? O1 PEG 80 A 1 HETATM 3 C C2 PEG . . . B 2 -35.729 13.13 5.074 1 30.36 ? C2 PEG 80 A 1 HETATM 4 O O2 PEG . . . B 2 -35.943 11.917 5.813 1 31.26 ? O2 PEG 80 A 1 HETATM 5 C C3 PEG . . . B 2 -35.156 10.831 5.283 1 31.7 ? C3 PEG 80 A 1 HETATM 6 C C4 PEG . . . B 2 -35.98 9.666 4.696 1 31.23 ? C4 PEG 80 A 1 HETATM 7 O O4 PEG . . . B 2 -35.381 9.104 3.501 1 28.59 ? O4 PEG 80 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #